Wall clock time and date at job start Wed Apr 1 2020 01:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45195 * 109.47067 * 2 1 4 4 C 1.34220 * 117.00136 * 180.02562 * 3 2 1 5 5 O 1.20831 * 120.00385 * 359.97438 * 4 3 2 6 6 C 1.50707 * 120.00439 * 180.02562 * 4 3 2 7 7 C 1.50697 * 109.47341 * 179.97438 * 6 4 3 8 8 N 1.29500 * 126.14328 * 90.03991 * 7 6 4 9 9 N 1.26253 * 116.58257 * 179.69624 * 8 7 6 10 10 C 1.29888 * 117.65648 * 0.50684 * 9 8 7 11 11 N 1.39081 * 125.64952 * 179.79791 * 10 9 8 12 12 C 1.34767 * 120.00441 * 359.68639 * 11 10 9 13 13 O 1.21588 * 120.00075 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00297 * 179.97438 * 12 11 10 15 15 C 1.46507 * 120.00337 * 180.02562 * 14 12 11 16 16 H 1.09001 * 109.46896 * 325.00217 * 15 14 12 17 17 C 1.50697 * 109.47006 * 205.00517 * 15 14 12 18 18 H 1.07991 * 120.00449 * 359.72165 * 17 15 14 19 19 C 1.37885 * 119.99686 * 179.97438 * 17 15 14 20 20 N 1.31516 * 119.99913 * 359.72095 * 19 17 15 21 21 Si 1.86798 * 119.99766 * 179.72528 * 19 17 15 22 22 H 1.48493 * 109.47326 * 90.00142 * 21 19 17 23 23 H 1.48506 * 109.46545 * 209.99892 * 21 19 17 24 24 H 1.48498 * 109.47210 * 329.99603 * 21 19 17 25 25 C 1.52999 * 109.47144 * 85.00358 * 15 14 12 26 26 C 1.53007 * 109.46852 * 295.00275 * 25 15 14 27 27 S 1.71306 * 108.69298 * 359.52955 * 10 9 8 28 28 H 1.08998 * 109.47582 * 299.99791 * 1 2 3 29 29 H 1.09002 * 109.46974 * 60.00236 * 1 2 3 30 30 H 1.09002 * 109.46923 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46975 * 239.99771 * 2 1 3 32 32 H 1.09002 * 109.46974 * 119.99763 * 2 1 3 33 33 H 1.09003 * 109.46975 * 59.99688 * 6 4 3 34 34 H 1.09000 * 109.46675 * 300.00254 * 6 4 3 35 35 H 0.97003 * 119.99717 * 179.68792 * 11 10 9 36 36 H 0.96999 * 120.00410 * 0.02562 * 14 12 11 37 37 H 0.97000 * 119.99651 * 180.02562 * 20 19 17 38 38 H 1.08999 * 109.47377 * 54.99704 * 25 15 14 39 39 H 1.08991 * 109.46773 * 175.00474 * 25 15 14 40 40 H 1.08996 * 109.46556 * 180.02562 * 26 25 15 41 41 H 1.09004 * 109.47079 * 299.99653 * 26 25 15 42 42 H 1.09002 * 109.47338 * 59.99974 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4256 2.8586 -0.0001 8 7 6.1883 2.8198 -1.0460 9 7 7.4319 2.7603 -0.8364 10 6 7.8346 2.7333 0.3982 11 7 9.1590 2.6647 0.8175 12 6 10.1521 2.6137 -0.0921 13 8 9.8904 2.6282 -1.2794 14 7 11.4354 2.5478 0.3143 15 6 12.5151 2.4930 -0.6745 16 1 12.1852 1.9201 -1.5412 17 6 13.7224 1.8295 -0.0637 18 1 13.6905 1.4873 0.9601 19 6 14.8697 1.6639 -0.8104 20 7 14.9084 2.0802 -2.0573 21 14 16.3688 0.8484 -0.0509 22 1 16.3050 -0.6172 -0.2811 23 1 17.5997 1.3947 -0.6767 24 1 16.3935 1.1196 1.4090 25 6 12.8798 3.9134 -1.1107 26 6 11.6924 4.5429 -1.8422 27 16 6.4647 2.8036 1.4243 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5851 3.4691 0.8905 34 1 3.5843 3.4701 -0.8895 35 1 9.3678 2.6535 1.7647 36 1 11.6443 2.5366 1.2615 37 1 15.7154 1.9634 -2.5827 38 1 13.1243 4.5116 -0.2329 39 1 13.7407 3.8786 -1.7781 40 1 11.9524 5.5546 -2.1533 41 1 11.4479 3.9447 -2.7200 42 1 10.8313 4.5776 -1.1747 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274664731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:43 Heat of formation + Delta-G solvation = -68.418739 kcal Electronic energy + Delta-G solvation = -26706.836329 eV Core-core repulsion = 22621.142071 eV Total energy + Delta-G solvation = -4085.694258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.49111 -41.56610 -41.08300 -37.86816 -37.49401 -36.12791 -34.45645 -33.92961 -32.78985 -32.41209 -29.98956 -28.85738 -26.80710 -25.12412 -24.40198 -23.52855 -22.35818 -21.63745 -21.02847 -20.83204 -19.15653 -18.93562 -18.75457 -17.85232 -17.72076 -17.46996 -17.18711 -16.81644 -16.15815 -15.98196 -15.54473 -15.26472 -15.10817 -14.58340 -14.47456 -14.30667 -14.13934 -13.59274 -13.57576 -13.54255 -13.19491 -12.89505 -12.86555 -12.71611 -12.55882 -12.48045 -12.20935 -12.07575 -11.76955 -11.70174 -11.57870 -11.54115 -11.41191 -11.07607 -10.84992 -10.64395 -10.54250 -10.01320 -9.60101 -8.16228 -6.33640 -0.67329 -0.53953 0.05910 1.07755 1.29468 1.42936 1.46197 1.49758 1.57585 1.78396 2.22868 2.41134 2.86958 3.13608 3.22389 3.64904 3.77107 3.98186 4.02507 4.09508 4.36885 4.41579 4.48107 4.50766 4.55355 4.72656 4.86119 4.91454 4.95862 5.03854 5.16191 5.21010 5.41162 5.43044 5.45202 5.58602 5.60238 5.81115 6.02201 6.14749 6.62228 6.73378 7.03430 7.33290 7.54024 7.66964 8.89507 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.025168 B = 0.002042 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.272099 B =13705.829052 C =14035.395564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 O -0.349 6.349 4 C 0.468 3.532 5 O -0.539 6.539 6 C -0.022 4.022 7 C -0.009 4.009 8 N -0.248 5.248 9 N -0.325 5.325 10 C 0.236 3.764 11 N -0.624 5.624 12 C 0.686 3.314 13 O -0.573 6.573 14 N -0.705 5.705 15 C 0.296 3.704 16 H -0.002 1.002 17 C -0.546 4.546 18 H 0.076 0.924 19 C 0.015 3.985 20 N -0.915 5.915 21 Si 0.973 3.027 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.258 1.258 25 C -0.119 4.119 26 C -0.121 4.121 27 S 0.213 5.787 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.181 0.819 34 H 0.165 0.835 35 H 0.439 0.561 36 H 0.406 0.594 37 H 0.265 0.735 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.044 0.956 41 H 0.021 0.979 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.587 2.648 14.120 31.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.266 6.266 4 C 0.311 3.689 5 O -0.429 6.429 6 C -0.063 4.063 7 C -0.292 4.292 8 N -0.085 5.085 9 N -0.170 5.170 10 C -0.135 4.135 11 N -0.281 5.281 12 C 0.384 3.616 13 O -0.447 6.447 14 N -0.359 5.359 15 C 0.192 3.808 16 H 0.016 0.984 17 C -0.584 4.584 18 H 0.095 0.905 19 C -0.186 4.186 20 N -0.553 5.553 21 Si 0.797 3.203 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.181 1.181 25 C -0.159 4.159 26 C -0.178 4.178 27 S 0.453 5.547 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.199 0.801 34 H 0.183 0.817 35 H 0.280 0.720 36 H 0.242 0.758 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -27.219 2.353 12.564 30.071 hybrid contribution 1.504 -0.884 0.400 1.790 sum -25.715 1.469 12.964 28.835 Atomic orbital electron populations 1.21824 0.90096 1.04308 1.04041 1.23305 0.97199 0.79090 1.02459 1.86472 1.22886 1.33653 1.83574 1.23694 0.81082 0.92440 0.71720 1.90754 1.61348 1.44445 1.46320 1.19958 0.82355 0.91968 1.11977 1.29612 1.02427 1.07388 0.89798 1.71348 0.96333 1.12900 1.27883 1.71564 1.06602 1.21800 1.17018 1.25936 0.92702 1.01150 0.93729 1.41982 0.99864 1.75083 1.11145 1.16253 0.81540 0.78895 0.84959 1.91049 1.82410 1.55319 1.15954 1.45409 1.02838 1.76192 1.11451 1.18357 0.82766 0.93147 0.86510 0.98449 1.21535 0.97276 1.39745 0.99868 0.90544 1.25787 1.01776 0.95844 0.95155 1.70062 1.29395 1.46619 1.09201 0.85337 0.77853 0.78020 0.79046 1.20716 1.21072 1.18149 1.21803 0.98188 0.96500 0.99374 1.21642 0.98174 0.98575 0.99410 1.84025 0.94079 1.69194 1.07359 0.90612 0.91182 0.88610 0.92074 0.91083 0.80130 0.81720 0.71961 0.75845 0.92579 0.93471 0.90804 0.93658 0.95956 0.94266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 71.98 0.74 -0.22 16 2 C 0.05 0.68 6.19 71.98 0.45 1.13 16 3 O -0.35 -5.13 10.22 -51.32 -0.52 -5.65 16 4 C 0.47 8.55 7.95 71.24 0.57 9.12 16 5 O -0.54 -14.89 15.78 21.95 0.35 -14.55 16 6 C -0.02 -0.26 6.44 29.10 0.19 -0.07 16 7 C -0.01 -0.21 6.29 88.45 0.56 0.35 16 8 N -0.25 -8.51 11.65 -47.68 -0.56 -9.06 16 9 N -0.33 -13.05 9.73 -59.09 -0.58 -13.63 16 10 C 0.24 7.48 8.14 179.10 1.46 8.94 16 11 N -0.62 -18.88 5.41 -326.98 -1.77 -20.65 16 12 C 0.69 28.38 7.10 179.06 1.27 29.65 16 13 O -0.57 -29.84 12.16 -3.99 -0.05 -29.89 16 14 N -0.70 -28.55 5.03 -461.41 -2.32 -30.87 16 15 C 0.30 15.14 2.24 44.24 0.10 15.24 16 16 H 0.00 -0.15 7.58 -2.39 -0.02 -0.17 16 17 C -0.55 -28.35 8.73 25.60 0.22 -28.12 16 18 H 0.08 3.65 7.74 -2.92 -0.02 3.63 16 19 C 0.01 0.78 5.29 84.66 0.45 1.23 16 20 N -0.91 -52.42 11.31 21.45 0.24 -52.18 16 21 Si 0.97 41.73 29.54 68.60 2.03 43.76 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.29 -12.15 7.11 99.48 0.71 -11.45 16 24 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 25 C -0.12 -5.91 5.45 30.60 0.17 -5.75 16 26 C -0.12 -5.69 8.51 71.98 0.61 -5.08 16 27 S 0.21 4.14 23.31 -56.49 -1.32 2.83 16 28 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 32 H 0.07 0.91 8.13 -2.39 -0.02 0.89 16 33 H 0.18 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.17 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.44 8.60 8.84 -92.71 -0.82 7.78 16 36 H 0.41 13.05 8.55 -92.71 -0.79 12.26 16 37 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 38 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.07 4.09 5.96 -2.39 -0.01 4.07 16 40 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.02 1.14 7.84 -2.39 -0.02 1.12 16 42 H 0.04 1.81 5.64 -2.39 -0.01 1.79 16 Total: -1.00 -84.86 371.79 1.76 -83.11 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -0.52 Total: 20.39 kcal Atomic # 6 Polarization: 19.62 SS G_CDS: 6.78 Total: 26.40 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -4.98 Total: -126.40 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -0.23 Total: -50.08 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -1.32 Total: 2.83 kcal Total: -84.86 1.76 -83.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274664731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.687 kcal (2) G-P(sol) polarization free energy of solvation -84.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds