Wall clock time and date at job start Wed Apr 1 2020 01:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46925 * 2 1 4 4 H 1.08997 * 109.47133 * 54.99872 * 3 2 1 5 5 C 1.50698 * 109.47030 * 175.00095 * 3 2 1 6 6 H 1.08000 * 119.99861 * 119.99909 * 5 3 2 7 7 C 1.37873 * 119.99940 * 299.99838 * 5 3 2 8 8 N 1.31520 * 119.99946 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00204 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47287 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47197 * 119.99774 * 9 7 5 12 12 H 1.48499 * 109.47275 * 239.99967 * 9 7 5 13 13 N 1.46501 * 109.46705 * 294.99701 * 3 2 1 14 14 C 1.34781 * 119.99618 * 85.00527 * 13 3 2 15 15 O 1.21364 * 120.00099 * 359.97438 * 14 13 3 16 16 C 1.49327 * 119.99916 * 179.97438 * 14 13 3 17 17 O 1.21395 * 119.99762 * 359.97438 * 16 14 13 18 18 N 1.34769 * 120.00164 * 179.97438 * 16 14 13 19 19 C 1.39950 * 120.00051 * 185.52688 * 18 16 14 20 20 C 1.38812 * 120.06120 * 24.82760 * 19 18 16 21 21 C 1.38300 * 119.97891 * 180.24785 * 20 19 18 22 22 F 1.35103 * 119.95226 * 179.74781 * 21 20 19 23 23 C 1.38698 * 120.10475 * 359.72980 * 21 20 19 24 24 F 1.35109 * 119.93958 * 179.97438 * 23 21 20 25 25 C 1.38411 * 120.12515 * 0.02562 * 23 21 20 26 26 C 1.38538 * 120.01726 * 359.97438 * 25 23 21 27 27 O 1.35997 * 120.05444 * 179.97438 * 26 25 23 28 28 C 1.42899 * 116.99463 * 0.02562 * 27 26 25 29 29 H 1.08996 * 109.46823 * 60.00296 * 1 2 3 30 30 H 1.09002 * 109.46778 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47292 * 300.00064 * 1 2 3 32 32 H 1.09001 * 109.47292 * 239.99935 * 2 1 3 33 33 H 1.08990 * 109.47220 * 119.99902 * 2 1 3 34 34 H 0.97004 * 119.99657 * 179.97438 * 8 7 5 35 35 H 0.97001 * 120.00270 * 264.99191 * 13 3 2 36 36 H 0.97002 * 119.99605 * 5.53357 * 18 16 14 37 37 H 1.08007 * 120.01069 * 359.97438 * 20 19 18 38 38 H 1.07990 * 119.99117 * 179.97438 * 25 23 21 39 39 H 1.09007 * 109.46828 * 180.02562 * 28 27 26 40 40 H 1.08998 * 109.47198 * 60.00333 * 28 27 26 41 41 H 1.08997 * 109.47566 * 299.99766 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8786 1.2279 8 7 3.4062 0.3367 2.1728 9 14 6.0049 0.8814 1.3818 10 1 6.5988 1.5464 0.1942 11 1 6.3989 1.6169 2.6102 12 1 6.4971 -0.5173 1.4630 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3401 2.6319 -0.4338 16 6 0.0402 3.3324 -2.6428 17 8 0.8158 3.3652 -3.5761 18 7 -1.1773 3.8988 -2.7581 19 6 -1.5918 4.4223 -3.9880 20 6 -1.0434 3.9411 -5.1689 21 6 -1.4506 4.4633 -6.3831 22 9 -0.9127 3.9981 -7.5319 23 6 -2.4105 5.4636 -6.4234 24 9 -2.8054 5.9717 -7.6114 25 6 -2.9639 5.9430 -5.2489 26 6 -2.5598 5.4237 -4.0297 27 8 -3.1026 5.8946 -2.8752 28 6 -4.0852 6.9254 -2.9936 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8293 -0.0617 2.9495 35 1 2.2720 2.1232 -1.9978 36 1 -1.7661 3.9437 -1.9886 37 1 -0.2957 3.1622 -5.1393 38 1 -3.7108 6.7222 -5.2827 39 1 -4.4351 7.2096 -2.0011 40 1 -4.9251 6.5606 -3.5847 41 1 -3.6445 7.7928 -3.4851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291224026.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:07 Heat of formation + Delta-G solvation = -181.661895 kcal Electronic energy + Delta-G solvation = -29608.061170 eV Core-core repulsion = 24931.323183 eV Total energy + Delta-G solvation = -4676.737987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.122 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.56541 -49.63785 -42.37618 -41.13121 -39.86832 -38.21069 -37.21353 -35.97520 -34.31215 -32.82144 -31.54379 -30.70234 -29.17635 -28.17978 -26.44564 -24.96895 -24.11571 -23.44909 -21.94612 -21.25583 -20.42231 -19.67879 -19.15178 -18.66522 -17.98788 -17.89925 -17.53841 -17.42020 -17.07999 -16.90585 -16.63402 -16.41792 -16.05796 -15.95799 -15.74757 -15.60137 -15.23187 -15.06038 -14.61559 -14.43672 -14.16523 -13.87705 -13.59426 -13.46019 -13.21117 -13.11194 -12.91332 -12.71335 -12.55929 -12.45139 -12.13543 -12.10191 -12.09013 -11.59576 -11.56198 -11.08614 -10.66999 -10.54095 -9.98331 -9.84192 -9.04094 -8.18300 -6.34873 -0.49529 -0.19225 0.39873 1.17228 1.44530 1.47361 1.58292 1.95788 2.02614 2.27551 2.38418 2.56642 2.75705 3.09182 3.11960 3.33170 3.48399 3.78337 3.85696 4.25933 4.31186 4.44747 4.50295 4.53737 4.56451 4.58332 4.70091 4.72994 4.83812 4.96786 5.03393 5.23511 5.36128 5.40076 5.40466 5.57131 5.65877 5.78676 5.89911 6.07784 6.12496 6.45378 6.67545 6.75037 7.09829 7.37064 8.87016 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.017541 B = 0.002539 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.865808 B =11026.097246 C =11761.402052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.017 0.983 5 C -0.552 4.552 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.278 1.278 13 N -0.669 5.669 14 C 0.497 3.503 15 O -0.542 6.542 16 C 0.517 3.483 17 O -0.514 6.514 18 N -0.622 5.622 19 C 0.127 3.873 20 C -0.112 4.112 21 C 0.041 3.959 22 F -0.135 7.135 23 C 0.092 3.908 24 F -0.127 7.127 25 C -0.180 4.180 26 C 0.137 3.863 27 O -0.318 6.318 28 C 0.011 3.989 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.036 0.964 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.267 0.733 35 H 0.409 0.591 36 H 0.436 0.564 37 H 0.162 0.838 38 H 0.192 0.808 39 H 0.122 0.878 40 H 0.078 0.922 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.111 12.123 -13.525 24.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.035 0.965 5 C -0.590 4.590 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.208 1.208 12 H -0.204 1.204 13 N -0.319 5.319 14 C 0.277 3.723 15 O -0.421 6.421 16 C 0.300 3.700 17 O -0.389 6.389 18 N -0.269 5.269 19 C 0.031 3.969 20 C -0.133 4.133 21 C 0.021 3.979 22 F -0.114 7.114 23 C 0.071 3.929 24 F -0.105 7.105 25 C -0.200 4.200 26 C 0.089 3.911 27 O -0.231 6.231 28 C -0.082 4.082 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.245 0.755 36 H 0.277 0.723 37 H 0.179 0.821 38 H 0.209 0.791 39 H 0.140 0.860 40 H 0.097 0.903 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.017 11.928 -13.144 23.908 hybrid contribution 0.995 -0.083 -0.193 1.017 sum -15.021 11.845 -13.337 23.320 Atomic orbital electron populations 1.21715 0.96509 0.99704 1.00485 1.21825 0.94190 0.98541 1.01718 1.18653 0.94051 0.89599 0.80292 0.96521 1.21551 0.91269 1.39369 1.06837 0.91365 1.25660 1.03050 0.94228 0.94942 1.70017 1.36880 1.38031 1.09813 0.85365 0.79392 0.77867 0.78140 1.18940 1.20777 1.20389 1.46236 1.14224 1.53012 1.18413 1.19853 0.83786 0.80955 0.87714 1.90749 1.51394 1.59777 1.40208 1.20384 0.81957 0.79160 0.88519 1.90715 1.51048 1.57020 1.40157 1.42883 1.16483 1.55509 1.12005 1.16872 0.98398 0.96359 0.85245 1.21006 1.02050 1.01688 0.88558 1.17347 0.98906 0.99197 0.82494 1.91509 1.84948 1.87787 1.47129 1.17364 0.97326 0.95948 0.82257 1.91537 1.89446 1.85704 1.43838 1.21076 1.05511 1.05342 0.88072 1.18283 0.94068 0.92196 0.86592 1.86135 1.55712 1.54579 1.26692 1.23578 0.89759 0.88467 1.06446 0.94019 0.93282 0.94477 0.94128 0.90341 0.92391 0.75543 0.72344 0.82113 0.79064 0.86005 0.90298 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.26 8.51 71.98 0.61 -4.65 16 2 C -0.12 -5.80 5.45 30.60 0.17 -5.64 16 3 C 0.28 13.54 2.24 44.25 0.10 13.64 16 4 H 0.02 0.95 7.58 -2.39 -0.02 0.93 16 5 C -0.55 -28.58 8.73 25.60 0.22 -28.36 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.38 16 7 C 0.02 1.15 5.29 84.65 0.45 1.60 16 8 N -0.91 -49.91 11.29 21.45 0.24 -49.67 16 9 Si 0.97 41.43 29.54 68.60 2.03 43.46 16 10 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 11 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 12 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 13 N -0.67 -27.50 5.01 -447.54 -2.24 -29.75 16 14 C 0.50 18.75 6.45 87.23 0.56 19.31 16 15 O -0.54 -22.31 13.62 -3.29 -0.04 -22.35 16 16 C 0.52 16.36 7.69 87.23 0.67 17.03 16 17 O -0.51 -17.33 13.64 -3.39 -0.05 -17.38 16 18 N -0.62 -16.03 5.27 -304.46 -1.60 -17.64 16 19 C 0.13 2.94 6.44 38.25 0.25 3.19 16 20 C -0.11 -2.79 8.69 22.42 0.19 -2.59 16 21 C 0.04 0.97 7.30 22.39 0.16 1.13 16 22 F -0.14 -3.51 17.17 44.97 0.77 -2.74 16 23 C 0.09 1.77 7.30 22.42 0.16 1.93 16 24 F -0.13 -2.51 17.18 44.97 0.77 -1.74 16 25 C -0.18 -2.56 9.01 22.38 0.20 -2.35 16 26 C 0.14 2.42 6.70 22.61 0.15 2.57 16 27 O -0.32 -4.83 9.90 -93.51 -0.93 -5.76 16 28 C 0.01 0.07 9.81 113.37 1.11 1.18 16 29 H 0.04 1.65 5.64 -2.39 -0.01 1.63 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.04 1.63 7.85 -2.39 -0.02 1.61 16 32 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 4.11 5.95 -2.39 -0.01 4.10 16 34 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 35 H 0.41 15.65 8.01 -92.71 -0.74 14.91 16 36 H 0.44 10.35 7.81 -92.71 -0.72 9.63 16 37 H 0.16 4.50 5.78 -2.91 -0.02 4.49 16 38 H 0.19 1.28 6.29 -2.92 -0.02 1.26 16 39 H 0.12 0.42 8.14 -2.38 -0.02 0.40 16 40 H 0.08 0.22 7.66 -2.39 -0.02 0.20 16 41 H 0.07 0.27 7.66 -2.39 -0.02 0.25 16 Total: -1.00 -62.28 354.30 3.63 -58.65 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: -0.33 Total: 26.90 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 5.02 Total: 18.00 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -3.61 Total: -97.05 kcal Atomic # 8 Polarization: -44.47 SS G_CDS: -1.02 Total: -45.49 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 1.54 Total: -4.48 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -62.28 3.63 -58.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291224026.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.009 kcal (2) G-P(sol) polarization free energy of solvation -62.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds