Wall clock time and date at job start Wed Apr 1 2020 00:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38220 * 119.95585 * 2 1 4 4 C 1.38103 * 120.13177 * 180.30286 * 3 2 1 5 5 C 1.38990 * 120.03612 * 359.71656 * 4 3 2 6 6 N 1.39721 * 120.05370 * 180.02562 * 5 4 3 7 7 C 1.34774 * 119.99701 * 324.57494 * 6 5 4 8 8 O 1.21384 * 120.00095 * 5.10539 * 7 6 5 9 9 C 1.49355 * 120.00280 * 185.11203 * 7 6 5 10 10 O 1.21363 * 119.99578 * 359.86833 * 9 7 6 11 11 N 1.34776 * 120.00136 * 179.86949 * 9 7 6 12 12 C 1.46493 * 119.99946 * 354.34236 * 11 9 7 13 13 C 1.46499 * 119.99501 * 174.34647 * 11 9 7 14 14 C 1.50704 * 109.47231 * 90.00240 * 13 11 9 15 15 H 1.07997 * 120.00043 * 359.97438 * 14 13 11 16 16 C 1.37878 * 119.99943 * 179.97438 * 14 13 11 17 17 N 1.31513 * 119.99820 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00105 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47096 * 59.99703 * 18 16 14 20 20 H 1.48499 * 109.47228 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46912 * 299.99961 * 18 16 14 22 22 C 1.38816 * 119.90116 * 0.02562 * 5 4 3 23 23 C 1.38607 * 119.87199 * 359.97438 * 22 5 4 24 24 O 1.35895 * 120.02237 * 180.02562 * 23 22 5 25 25 C 1.42900 * 116.99940 * 0.02562 * 24 23 22 26 26 F 1.39900 * 109.47208 * 59.99497 * 25 24 23 27 27 F 1.39905 * 109.46931 * 299.99478 * 25 24 23 28 28 H 1.08995 * 109.47157 * 270.25823 * 1 2 3 29 29 H 1.09008 * 109.47142 * 30.25704 * 1 2 3 30 30 H 1.09000 * 109.47542 * 150.25194 * 1 2 3 31 31 H 1.07999 * 119.93569 * 0.02562 * 3 2 1 32 32 H 1.08003 * 119.98959 * 179.70500 * 4 3 2 33 33 H 0.96999 * 119.99992 * 144.57034 * 6 5 4 34 34 H 1.08996 * 109.47156 * 84.06580 * 12 11 9 35 35 H 1.09003 * 109.47268 * 204.06036 * 12 11 9 36 36 H 1.09000 * 109.47303 * 324.05833 * 12 11 9 37 37 H 1.09010 * 109.46902 * 209.99506 * 13 11 9 38 38 H 1.08999 * 109.47148 * 329.99591 * 13 11 9 39 39 H 0.97004 * 120.00244 * 180.02562 * 17 16 14 40 40 H 1.07998 * 120.06357 * 180.02562 * 22 5 4 41 41 H 1.08998 * 109.47445 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1976 0.0000 4 6 3.5782 1.2018 -0.0063 5 6 4.2776 0.0007 -0.0067 6 7 5.6748 0.0046 -0.0126 7 6 6.3431 0.9562 -0.6939 8 8 5.7350 1.8625 -1.2252 9 6 7.8320 0.8955 -0.7955 10 8 8.4401 -0.0094 -0.2625 11 7 8.5001 1.8457 -1.4791 12 6 7.7613 2.8670 -2.2255 13 6 9.9650 1.8569 -1.4756 14 6 10.4765 1.0269 -2.6248 15 1 9.7800 0.5393 -3.2908 16 6 11.8336 0.8899 -2.8258 17 7 12.6817 1.4840 -2.0151 18 14 12.4677 -0.1395 -4.2497 19 1 11.9707 0.4264 -5.5296 20 1 13.9526 -0.1270 -4.2470 21 1 11.9837 -1.5360 -4.1050 22 6 3.5859 -1.2028 -0.0013 23 6 2.1998 -1.2025 0.0050 24 8 1.5196 -2.3789 0.0108 25 6 2.2972 -3.5779 0.0106 26 9 3.1091 -3.6074 1.1495 27 9 3.0994 -3.6132 -1.1351 28 1 -0.3633 0.0046 1.0276 29 1 -0.3634 0.8877 -0.5179 30 1 -0.3634 -0.8922 -0.5099 31 1 1.6554 2.1318 0.0004 32 1 4.1151 2.1389 -0.0111 33 1 6.1637 -0.6775 0.4738 34 1 7.4798 3.6766 -1.5522 35 1 8.3912 3.2606 -3.0234 36 1 6.8636 2.4239 -2.6565 37 1 10.3207 2.8819 -1.5813 38 1 10.3293 1.4409 -0.5363 39 1 13.6366 1.3880 -2.1567 40 1 4.1267 -2.1377 -0.0012 41 1 1.6327 -4.4419 0.0160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338834882.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:49 Heat of formation + Delta-G solvation = -171.622233 kcal Electronic energy + Delta-G solvation = -29669.211318 eV Core-core repulsion = 24992.908683 eV Total energy + Delta-G solvation = -4676.302635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.122 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.67032 -47.65980 -41.02641 -40.03849 -38.41461 -37.39006 -35.68542 -34.57562 -32.60674 -31.79119 -30.59251 -28.15858 -27.23026 -26.50187 -25.88847 -24.28284 -23.01879 -22.54716 -21.34500 -19.79996 -19.07314 -18.43707 -18.23575 -17.43221 -16.87794 -16.65867 -16.11587 -15.96287 -15.73400 -15.24688 -15.05042 -14.85602 -14.76173 -14.38986 -14.33779 -13.99524 -13.84659 -13.67104 -13.30098 -13.23168 -13.13449 -12.91446 -12.55360 -12.42951 -12.22584 -12.11786 -12.03340 -11.71604 -11.38145 -11.29857 -10.99907 -10.79190 -10.59611 -10.22143 -10.21790 -9.71949 -8.95302 -8.79064 -8.49444 -8.16515 -7.83317 -6.10982 -4.16362 0.91199 1.12279 1.85666 2.19962 2.61223 3.14739 3.30305 3.34107 3.37323 3.41988 3.70075 3.90842 3.99292 4.28056 4.39920 4.51902 4.64494 4.73528 4.88325 4.96858 5.18417 5.23754 5.28327 5.41379 5.43597 5.72247 5.87865 5.92130 6.07572 6.10750 6.18589 6.24747 6.34791 6.49431 6.76768 6.86147 7.13244 7.24322 7.33250 7.78292 7.86863 8.11127 8.15727 8.58332 8.87763 9.48638 10.97263 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.015706 B = 0.002656 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.301019 B =10538.985917 C =11642.771858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.118 4.118 3 C -0.070 4.070 4 C -0.138 4.138 5 C 0.182 3.818 6 N -0.652 5.652 7 C 0.510 3.490 8 O -0.499 6.499 9 C 0.494 3.506 10 O -0.520 6.520 11 N -0.561 5.561 12 C 0.078 3.922 13 C 0.243 3.757 14 C -0.530 4.530 15 H 0.059 0.941 16 C 0.063 3.937 17 N -0.894 5.894 18 Si 0.901 3.099 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.212 4.212 23 C 0.120 3.880 24 O -0.317 6.317 25 C 0.410 3.590 26 F -0.198 7.198 27 F -0.196 7.196 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.137 0.863 32 H 0.147 0.853 33 H 0.424 0.576 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.042 0.958 38 H 0.047 0.953 39 H 0.265 0.735 40 H 0.138 0.862 41 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.826 -5.100 5.660 26.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.119 4.119 3 C -0.089 4.089 4 C -0.158 4.158 5 C 0.087 3.913 6 N -0.299 5.299 7 C 0.294 3.706 8 O -0.373 6.373 9 C 0.274 3.726 10 O -0.398 6.398 11 N -0.293 5.293 12 C -0.065 4.065 13 C 0.125 3.875 14 C -0.569 4.569 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.728 3.272 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.233 4.233 23 C 0.076 3.924 24 O -0.235 6.235 25 C 0.320 3.680 26 F -0.180 7.180 27 F -0.178 7.178 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.155 0.845 32 H 0.164 0.836 33 H 0.262 0.738 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.156 0.844 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -25.764 -4.889 5.549 26.804 hybrid contribution 1.132 -1.052 -0.611 1.662 sum -24.632 -5.941 4.938 25.815 Atomic orbital electron populations 1.20607 0.90207 1.02874 1.02307 1.19248 0.96629 0.89847 1.06213 1.20800 0.93396 0.96879 0.97826 1.21346 0.94101 0.98033 1.02354 1.17427 0.82447 0.93278 0.98152 1.43266 1.04372 1.31832 1.50402 1.21020 0.90079 0.81558 0.77914 1.90675 1.69968 1.32759 1.43936 1.19490 0.86220 0.84308 0.82575 1.90756 1.68544 1.32975 1.47490 1.48128 1.09817 1.26245 1.45085 1.22050 0.97050 0.91156 0.96233 1.19526 0.70872 0.98187 0.98958 1.21340 0.91855 1.31358 1.12359 0.92280 1.24926 0.96565 0.95717 0.96745 1.69916 1.02633 1.43327 1.37377 0.86507 0.77568 0.80850 0.82228 1.20139 1.21094 1.20090 1.21224 0.92836 0.98847 1.10357 1.18258 0.89687 0.84593 0.99836 1.86597 1.35583 1.12608 1.88673 1.23365 0.82490 0.90199 0.71988 1.93110 1.76005 1.96591 1.52253 1.93130 1.76456 1.96548 1.51680 0.91310 0.91409 0.91315 0.84549 0.83585 0.73802 0.93078 0.91009 0.90013 0.94055 0.93522 0.92501 0.84392 0.80257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 9.79 36.00 0.35 -0.42 16 2 C -0.12 -1.22 5.90 -104.43 -0.62 -1.84 16 3 C -0.07 -0.74 9.69 -39.64 -0.38 -1.12 16 4 C -0.14 -1.78 8.70 -39.35 -0.34 -2.12 16 5 C 0.18 2.51 6.29 -83.77 -0.53 1.98 16 6 N -0.65 -9.74 5.32 -10.31 -0.05 -9.79 16 7 C 0.51 8.91 7.61 -11.63 -0.09 8.82 16 8 O -0.50 -8.69 10.71 5.47 0.06 -8.63 16 9 C 0.49 10.44 7.72 -11.63 -0.09 10.35 16 10 O -0.52 -12.37 16.12 5.49 0.09 -12.28 16 11 N -0.56 -12.29 2.86 -183.51 -0.52 -12.81 16 12 C 0.08 1.40 9.27 59.84 0.55 1.96 16 13 C 0.24 6.29 5.09 -5.19 -0.03 6.26 16 14 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 15 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 18 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.21 -2.68 8.17 -39.23 -0.32 -3.00 16 23 C 0.12 1.37 6.45 -39.24 -0.25 1.11 16 24 O -0.32 -2.96 9.47 -19.41 -0.18 -3.14 16 25 C 0.41 3.00 5.98 101.05 0.60 3.60 16 26 F -0.20 -1.82 15.58 2.25 0.04 -1.79 16 27 F -0.20 -1.96 15.58 2.25 0.04 -1.92 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.42 8.09 -51.92 -0.42 0.00 16 30 H 0.07 0.51 7.52 -51.93 -0.39 0.11 16 31 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.15 1.98 6.23 -52.48 -0.33 1.65 16 33 H 0.42 5.89 8.30 -40.82 -0.34 5.55 16 34 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 35 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 36 H 0.08 1.43 5.84 -51.93 -0.30 1.12 16 37 H 0.04 1.07 8.07 -51.92 -0.42 0.65 16 38 H 0.05 1.33 7.51 -51.93 -0.39 0.94 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.14 1.71 5.09 -52.49 -0.27 1.45 16 41 H 0.18 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 358.53 15.07 5.40 5.40 Total: -1.00 -33.30 358.53 -5.49 -38.80 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.51 Total: 2.90 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: -1.56 Total: 11.99 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.16 Total: -48.05 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.04 Total: -24.06 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.07 Total: -3.71 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.30 -5.49 -38.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338834882.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.826 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds