Wall clock time and date at job start Wed Apr 1 2020 00:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38220 * 119.95585 * 2 1 4 4 C 1.38103 * 120.13177 * 180.30286 * 3 2 1 5 5 C 1.38990 * 120.03612 * 359.71656 * 4 3 2 6 6 N 1.39721 * 120.05370 * 180.02562 * 5 4 3 7 7 C 1.34774 * 119.99701 * 324.57494 * 6 5 4 8 8 O 1.21384 * 120.00095 * 5.10539 * 7 6 5 9 9 C 1.49355 * 120.00280 * 185.11203 * 7 6 5 10 10 O 1.21363 * 119.99578 * 359.86833 * 9 7 6 11 11 N 1.34776 * 120.00136 * 179.86949 * 9 7 6 12 12 C 1.46493 * 119.99946 * 354.34236 * 11 9 7 13 13 C 1.46499 * 119.99501 * 174.34647 * 11 9 7 14 14 C 1.50704 * 109.47231 * 90.00240 * 13 11 9 15 15 H 1.07997 * 120.00043 * 359.97438 * 14 13 11 16 16 C 1.37878 * 119.99943 * 179.97438 * 14 13 11 17 17 N 1.31513 * 119.99820 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00105 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47096 * 59.99703 * 18 16 14 20 20 H 1.48499 * 109.47228 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46912 * 299.99961 * 18 16 14 22 22 C 1.38816 * 119.90116 * 0.02562 * 5 4 3 23 23 C 1.38607 * 119.87199 * 359.97438 * 22 5 4 24 24 O 1.35895 * 120.02237 * 180.02562 * 23 22 5 25 25 C 1.42900 * 116.99940 * 0.02562 * 24 23 22 26 26 F 1.39900 * 109.47208 * 59.99497 * 25 24 23 27 27 F 1.39905 * 109.46931 * 299.99478 * 25 24 23 28 28 H 1.08995 * 109.47157 * 270.25823 * 1 2 3 29 29 H 1.09008 * 109.47142 * 30.25704 * 1 2 3 30 30 H 1.09000 * 109.47542 * 150.25194 * 1 2 3 31 31 H 1.07999 * 119.93569 * 0.02562 * 3 2 1 32 32 H 1.08003 * 119.98959 * 179.70500 * 4 3 2 33 33 H 0.96999 * 119.99992 * 144.57034 * 6 5 4 34 34 H 1.08996 * 109.47156 * 84.06580 * 12 11 9 35 35 H 1.09003 * 109.47268 * 204.06036 * 12 11 9 36 36 H 1.09000 * 109.47303 * 324.05833 * 12 11 9 37 37 H 1.09010 * 109.46902 * 209.99506 * 13 11 9 38 38 H 1.08999 * 109.47148 * 329.99591 * 13 11 9 39 39 H 0.97004 * 120.00244 * 180.02562 * 17 16 14 40 40 H 1.07998 * 120.06357 * 180.02562 * 22 5 4 41 41 H 1.08998 * 109.47445 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1976 0.0000 4 6 3.5782 1.2018 -0.0063 5 6 4.2776 0.0007 -0.0067 6 7 5.6748 0.0046 -0.0126 7 6 6.3431 0.9562 -0.6939 8 8 5.7350 1.8625 -1.2252 9 6 7.8320 0.8955 -0.7955 10 8 8.4401 -0.0094 -0.2625 11 7 8.5001 1.8457 -1.4791 12 6 7.7613 2.8670 -2.2255 13 6 9.9650 1.8569 -1.4756 14 6 10.4765 1.0269 -2.6248 15 1 9.7800 0.5393 -3.2908 16 6 11.8336 0.8899 -2.8258 17 7 12.6817 1.4840 -2.0151 18 14 12.4677 -0.1395 -4.2497 19 1 11.9707 0.4264 -5.5296 20 1 13.9526 -0.1270 -4.2470 21 1 11.9837 -1.5360 -4.1050 22 6 3.5859 -1.2028 -0.0013 23 6 2.1998 -1.2025 0.0050 24 8 1.5196 -2.3789 0.0108 25 6 2.2972 -3.5779 0.0106 26 9 3.1091 -3.6074 1.1495 27 9 3.0994 -3.6132 -1.1351 28 1 -0.3633 0.0046 1.0276 29 1 -0.3634 0.8877 -0.5179 30 1 -0.3634 -0.8922 -0.5099 31 1 1.6554 2.1318 0.0004 32 1 4.1151 2.1389 -0.0111 33 1 6.1637 -0.6775 0.4738 34 1 7.4798 3.6766 -1.5522 35 1 8.3912 3.2606 -3.0234 36 1 6.8636 2.4239 -2.6565 37 1 10.3207 2.8819 -1.5813 38 1 10.3293 1.4409 -0.5363 39 1 13.6366 1.3880 -2.1567 40 1 4.1267 -2.1377 -0.0012 41 1 1.6327 -4.4419 0.0160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338834882.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:48 Heat of formation + Delta-G solvation = -193.852655 kcal Electronic energy + Delta-G solvation = -29670.175301 eV Core-core repulsion = 24992.908683 eV Total energy + Delta-G solvation = -4677.266618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.122 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.33030 -48.33762 -42.28614 -41.10112 -39.81542 -38.45425 -37.18016 -35.98243 -34.69435 -32.72261 -31.46235 -30.12451 -28.27641 -27.57392 -27.05199 -25.92899 -24.13516 -23.76463 -22.44846 -21.17161 -19.99464 -19.37565 -18.90003 -18.79136 -18.63891 -18.07053 -17.40845 -17.17473 -16.97368 -16.87110 -16.24727 -16.03520 -15.75176 -15.71796 -15.16132 -15.04164 -14.92681 -14.68515 -14.64331 -14.28280 -13.97093 -13.90414 -13.85723 -13.76967 -13.58099 -13.36023 -13.17103 -12.97209 -12.95323 -12.69264 -12.52692 -12.27823 -12.22723 -12.16376 -11.78874 -11.27873 -10.67143 -10.43855 -9.78765 -9.67127 -9.10228 -8.26876 -6.41525 -0.16064 0.21821 0.48983 1.20475 1.37559 1.40686 1.48785 1.57800 2.04842 2.34342 2.48674 2.57661 2.60185 3.03705 3.20414 3.51017 3.66378 3.67032 3.84697 4.03676 4.11051 4.27223 4.40622 4.43342 4.66695 4.68071 4.81935 4.89987 4.91125 4.96581 5.07534 5.10883 5.25884 5.32898 5.39044 5.40256 5.51294 5.66660 5.87789 5.96564 5.96693 6.30732 6.57957 6.65169 6.92144 7.28721 8.80696 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.015706 B = 0.002656 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.301019 B =10538.985917 C =11642.771858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.114 4.114 3 C -0.065 4.065 4 C -0.149 4.149 5 C 0.155 3.845 6 N -0.640 5.640 7 C 0.522 3.478 8 O -0.499 6.499 9 C 0.488 3.512 10 O -0.556 6.556 11 N -0.570 5.570 12 C 0.081 3.919 13 C 0.257 3.743 14 C -0.549 4.549 15 H 0.052 0.948 16 C 0.013 3.987 17 N -0.924 5.924 18 Si 0.968 3.032 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.277 1.277 22 C -0.219 4.219 23 C 0.113 3.887 24 O -0.314 6.314 25 C 0.401 3.599 26 F -0.211 7.211 27 F -0.214 7.214 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.167 0.833 32 H 0.137 0.863 33 H 0.426 0.574 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.037 0.963 38 H 0.012 0.988 39 H 0.270 0.730 40 H 0.134 0.866 41 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.556 -5.526 4.895 29.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.116 4.116 3 C -0.083 4.083 4 C -0.169 4.169 5 C 0.061 3.939 6 N -0.287 5.287 7 C 0.304 3.696 8 O -0.373 6.373 9 C 0.270 3.730 10 O -0.435 6.435 11 N -0.301 5.301 12 C -0.061 4.061 13 C 0.136 3.864 14 C -0.588 4.588 15 H 0.071 0.929 16 C -0.186 4.186 17 N -0.563 5.563 18 Si 0.792 3.208 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.202 1.202 22 C -0.240 4.240 23 C 0.069 3.931 24 O -0.232 6.232 25 C 0.312 3.688 26 F -0.193 7.193 27 F -0.196 7.196 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.185 0.815 32 H 0.155 0.845 33 H 0.264 0.736 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.055 0.945 38 H 0.030 0.970 39 H 0.079 0.921 40 H 0.152 0.848 41 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -28.550 -5.308 4.785 29.431 hybrid contribution 1.849 -0.955 -0.299 2.103 sum -26.701 -6.263 4.486 27.790 Atomic orbital electron populations 1.20689 0.87784 1.03912 1.03436 1.19696 0.98381 0.89307 1.04183 1.21136 0.92444 0.98360 0.96384 1.21394 0.95271 0.97191 1.03086 1.17592 0.81414 0.94320 1.00570 1.43093 1.05220 1.30912 1.49472 1.20093 0.88098 0.82499 0.78865 1.90667 1.69287 1.32935 1.44444 1.20126 0.88063 0.83353 0.81485 1.90722 1.69894 1.34251 1.48667 1.48113 1.08650 1.27472 1.45846 1.22196 0.96728 0.90758 0.96378 1.19064 0.73487 0.97175 0.96644 1.21592 0.92327 1.31910 1.12949 0.92933 1.25803 0.96717 0.96740 0.99389 1.70020 1.03048 1.44344 1.38912 0.85468 0.77328 0.78789 0.79259 1.18707 1.20055 1.20231 1.21251 0.93680 0.98268 1.10775 1.18463 0.89283 0.85985 0.99407 1.86612 1.35682 1.12482 1.88379 1.24377 0.82765 0.90886 0.70764 1.93083 1.76643 1.96595 1.52960 1.93094 1.77210 1.96575 1.52717 0.89991 0.89650 0.91052 0.81533 0.84485 0.73560 0.90991 0.90891 0.89198 0.94487 0.96992 0.92136 0.84784 0.74584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 9.79 71.23 0.70 -0.46 16 2 C -0.11 -2.08 5.90 -19.74 -0.12 -2.20 16 3 C -0.06 -1.21 9.69 22.23 0.22 -0.99 16 4 C -0.15 -3.69 8.70 22.42 0.19 -3.50 16 5 C 0.15 4.25 6.29 38.20 0.24 4.49 16 6 N -0.64 -19.51 5.32 -304.87 -1.62 -21.13 16 7 C 0.52 18.44 7.61 87.24 0.66 19.10 16 8 O -0.50 -17.14 10.71 -3.35 -0.04 -17.17 16 9 C 0.49 21.26 7.72 87.24 0.67 21.93 16 10 O -0.56 -27.62 16.12 -3.29 -0.05 -27.68 16 11 N -0.57 -25.56 2.86 -852.84 -2.44 -27.99 16 12 C 0.08 2.89 9.27 127.77 1.18 4.07 16 13 C 0.26 13.78 5.09 85.63 0.44 14.22 16 14 C -0.55 -31.66 9.39 25.60 0.24 -31.42 16 15 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 16 C 0.01 0.76 5.46 84.66 0.46 1.22 16 17 N -0.92 -54.99 13.29 21.45 0.28 -54.71 16 18 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 C -0.22 -5.46 8.17 22.50 0.18 -5.27 16 23 C 0.11 2.39 6.45 22.49 0.15 2.54 16 24 O -0.31 -5.17 9.47 -92.37 -0.87 -6.05 16 25 C 0.40 5.09 5.98 113.37 0.68 5.76 16 26 F -0.21 -3.68 15.58 44.97 0.70 -2.97 16 27 F -0.21 -4.06 15.58 44.97 0.70 -3.36 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 0.70 8.09 -2.38 -0.02 0.69 16 30 H 0.07 0.81 7.52 -2.39 -0.02 0.79 16 31 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 32 H 0.14 3.62 6.23 -2.91 -0.02 3.60 16 33 H 0.43 12.35 8.30 -92.71 -0.77 11.58 16 34 H 0.07 2.25 8.13 -2.39 -0.02 2.24 16 35 H 0.07 2.56 8.03 -2.39 -0.02 2.54 16 36 H 0.09 3.07 5.84 -2.39 -0.01 3.06 16 37 H 0.04 1.99 8.07 -2.38 -0.02 1.97 16 38 H 0.01 0.72 7.51 -2.39 -0.02 0.70 16 39 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.13 3.36 5.09 -2.91 -0.01 3.35 16 41 H 0.24 0.13 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -73.53 358.53 4.92 -68.61 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.34 Total: 16.26 kcal Atomic # 6 Polarization: 23.58 SS G_CDS: 5.90 Total: 29.48 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -3.77 Total: -103.83 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -0.96 Total: -50.90 kcal Atomic # 9 Polarization: -7.74 SS G_CDS: 1.40 Total: -6.33 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -73.53 4.92 -68.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338834882.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.246 kcal (2) G-P(sol) polarization free energy of solvation -73.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds