Wall clock time and date at job start Wed Apr 1 2020 00:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99830 * 2 1 4 4 H 1.48497 * 109.46950 * 269.99666 * 3 2 1 5 5 H 1.48496 * 109.46874 * 29.99687 * 3 2 1 6 6 H 1.48499 * 109.47153 * 149.99849 * 3 2 1 7 7 C 1.37877 * 120.00706 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99368 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00515 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47264 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47397 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.47487 * 179.97438 * 11 10 9 13 13 O 1.42097 * 110.54009 * 68.37772 * 12 11 10 14 14 O 1.42094 * 110.54030 * 291.62654 * 12 11 10 15 15 N 1.65594 * 104.44984 * 179.97438 * 12 11 10 16 16 C 1.46508 * 120.00163 * 64.99935 * 15 12 11 17 17 C 1.53001 * 109.47159 * 164.99709 * 16 15 12 18 18 N 1.46498 * 109.46777 * 180.02562 * 17 16 15 19 19 C 1.34776 * 119.99780 * 180.02562 * 18 17 16 20 20 O 1.21515 * 120.00160 * 359.97438 * 19 18 17 21 21 C 1.48148 * 120.00017 * 180.02562 * 19 18 17 22 22 C 1.39443 * 120.09698 * 180.02562 * 21 19 18 23 23 N 1.32079 * 119.87260 * 179.97438 * 22 21 19 24 24 C 1.32142 * 120.07304 * 359.97438 * 23 22 21 25 25 C 1.38724 * 120.19178 * 0.28422 * 24 23 22 26 26 N 1.31797 * 120.12804 * 359.43155 * 25 24 23 27 27 H 0.96991 * 120.00313 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46930 * 60.00257 * 9 7 2 29 29 H 1.09001 * 109.46764 * 300.00072 * 9 7 2 30 30 H 1.09006 * 109.46704 * 59.99688 * 10 9 7 31 31 H 1.09002 * 109.46921 * 300.00415 * 10 9 7 32 32 H 1.09008 * 109.46988 * 59.99526 * 11 10 9 33 33 H 1.08998 * 109.47027 * 300.00379 * 11 10 9 34 34 H 0.96999 * 120.00138 * 244.99901 * 15 12 11 35 35 H 1.09001 * 109.46861 * 45.00046 * 16 15 12 36 36 H 1.08995 * 109.47058 * 285.00465 * 16 15 12 37 37 H 1.09001 * 109.46959 * 60.00397 * 17 16 15 38 38 H 1.09002 * 109.46922 * 300.00350 * 17 16 15 39 39 H 0.97003 * 120.00291 * 359.97438 * 18 17 16 40 40 H 1.07999 * 120.06715 * 359.94846 * 22 21 19 41 41 H 1.08002 * 119.90049 * 180.02562 * 24 23 22 42 42 H 1.08008 * 119.93444 * 179.69733 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0010 11 6 5.5517 -2.6364 0.0009 12 16 6.1565 -4.3466 0.0016 13 8 5.8604 -4.9806 -1.2352 14 8 5.8604 -4.9797 1.2387 15 7 7.8060 -4.2015 0.0007 16 6 8.4893 -3.6026 1.1500 17 6 9.9844 -3.9191 1.0762 18 7 10.6675 -3.3207 2.2257 19 6 11.9992 -3.4696 2.3707 20 8 12.6331 -4.1006 1.5482 21 6 12.6899 -2.8650 3.5335 22 6 14.0677 -3.0173 3.6852 23 7 14.6790 -2.4760 4.7233 24 6 13.9867 -1.7908 5.6162 25 6 12.6151 -1.6419 5.4709 26 7 11.9980 -2.1741 4.4351 27 1 -0.4850 0.8399 -0.0004 28 1 3.8746 -0.6799 0.8911 29 1 3.8752 -0.6802 -0.8889 30 1 3.6587 -3.1500 -0.8893 31 1 3.6580 -3.1504 0.8907 32 1 5.9150 -2.1225 0.8910 33 1 5.9149 -2.1224 -0.8890 34 1 8.3199 -4.5131 -0.7607 35 1 8.0764 -4.0120 2.0720 36 1 8.3454 -2.5223 1.1357 37 1 10.3974 -3.5097 0.1542 38 1 10.1282 -4.9995 1.0905 39 1 10.1616 -2.8166 2.8821 40 1 14.6337 -3.5773 2.9555 41 1 14.4895 -1.3489 6.4638 42 1 12.0526 -1.0852 6.2059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345128484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:16 Heat of formation + Delta-G solvation = -66.028115 kcal Electronic energy + Delta-G solvation = -25931.196730 eV Core-core repulsion = 21845.606138 eV Total energy + Delta-G solvation = -4085.590593 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.86057 -39.88015 -37.14388 -36.71559 -35.88396 -35.19349 -34.86312 -34.20961 -32.37730 -32.25294 -28.99983 -28.43081 -25.99247 -25.13610 -23.68497 -23.22155 -21.60092 -20.56463 -19.39889 -18.94430 -18.26770 -17.62932 -17.39572 -16.95559 -16.62920 -16.38417 -16.08207 -15.95147 -15.54198 -15.44835 -15.07663 -14.50555 -14.42987 -14.26967 -14.21817 -13.48902 -12.98821 -12.74421 -12.53423 -12.37209 -12.36480 -12.19818 -12.00449 -11.96571 -11.93363 -11.86590 -11.62611 -11.04563 -10.98667 -10.97691 -10.15368 -10.14349 -10.06144 -9.88491 -9.81249 -9.65040 -9.48868 -9.29456 -8.61971 -6.11358 -4.10917 -0.27394 0.28395 0.36587 2.12068 2.26227 2.80049 3.13711 3.23749 3.30791 3.31340 3.32786 3.53512 3.76037 3.79986 4.09848 4.17803 4.29056 4.37107 4.47137 4.55756 4.58178 4.85479 4.86908 4.90254 5.00028 5.17393 5.22419 5.36078 5.49756 5.57971 5.69409 5.80016 6.09021 6.21172 6.40326 6.61883 6.67884 6.78690 7.02755 7.08253 7.22227 7.52616 7.67636 8.44302 8.92978 9.49508 11.01867 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.002063 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.556660 B =13567.049489 C =15373.695860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.098 4.098 11 C -0.615 4.615 12 S 2.606 3.394 13 O -0.957 6.957 14 O -0.958 6.958 15 N -1.122 6.122 16 C 0.102 3.898 17 C 0.112 3.888 18 N -0.707 5.707 19 C 0.578 3.422 20 O -0.524 6.524 21 C 0.027 3.973 22 C 0.111 3.889 23 N -0.440 5.440 24 C 0.075 3.925 25 C 0.053 3.947 26 N -0.412 5.412 27 H 0.264 0.736 28 H 0.020 0.980 29 H 0.016 0.984 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.418 0.582 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.415 0.585 40 H 0.184 0.816 41 H 0.178 0.822 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.770 -3.322 9.683 31.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.138 4.138 11 C -0.747 4.747 12 S 2.702 3.298 13 O -0.947 6.947 14 O -0.947 6.947 15 N -0.881 5.881 16 C -0.025 4.025 17 C -0.013 4.013 18 N -0.360 5.360 19 C 0.362 3.638 20 O -0.399 6.399 21 C -0.114 4.114 22 C -0.048 4.048 23 N -0.154 5.154 24 C -0.086 4.086 25 C -0.110 4.110 26 N -0.130 5.130 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.252 0.748 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.251 0.749 40 H 0.201 0.799 41 H 0.195 0.805 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 29.484 -4.476 9.193 31.207 hybrid contribution 0.463 1.923 0.094 1.980 sum 29.948 -2.553 9.287 31.458 Atomic orbital electron populations 1.69904 1.06281 1.27005 1.50602 1.25033 0.94767 0.99185 0.94463 0.86769 0.80278 0.83623 0.78522 1.20240 1.21273 1.19087 1.21130 0.89243 0.94778 1.51422 0.90719 1.19529 0.97358 0.90700 0.96709 1.21322 0.86546 1.02985 1.02901 1.30599 1.09602 1.23239 1.11219 1.05197 0.72372 0.77965 0.74305 1.93601 1.82407 1.73586 1.45118 1.93582 1.82718 1.72796 1.45645 1.55646 1.26798 1.78364 1.27272 1.21387 0.92385 0.98697 0.90018 1.21569 0.90754 0.99823 0.89174 1.45643 1.07648 1.55124 1.27546 1.17580 0.82153 0.80050 0.84045 1.90840 1.65771 1.40690 1.42606 1.22134 0.93610 0.99329 0.96307 1.23882 0.91921 0.94144 0.94863 1.68669 1.38811 1.06228 1.01656 1.24194 0.93061 0.93593 0.97754 1.23918 0.93886 0.97511 0.95672 1.68335 1.39208 1.04319 1.01104 0.92602 0.96190 0.96616 0.90916 0.90888 0.85496 0.85167 0.74822 0.89169 0.90732 0.90033 0.89894 0.74887 0.79914 0.80450 0.80210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.03 27.47 -169.99 -4.67 16.37 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 7 C -0.53 -14.75 9.66 -34.44 -0.33 -15.08 16 8 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 9 C 0.00 -0.10 4.04 -27.88 -0.11 -0.21 16 10 C -0.10 -1.82 5.16 -26.73 -0.14 -1.95 16 11 C -0.61 -7.98 6.07 37.15 0.23 -7.75 16 12 S 2.61 32.97 5.46 -107.50 -0.59 32.38 16 13 O -0.96 -15.29 18.08 -57.54 -1.04 -16.33 16 14 O -0.96 -15.08 17.50 -57.54 -1.01 -16.09 16 15 N -1.12 -9.45 5.89 -10.61 -0.06 -9.51 16 16 C 0.10 0.70 6.25 -4.04 -0.03 0.68 16 17 C 0.11 0.76 5.82 -4.04 -0.02 0.74 16 18 N -0.71 -5.01 5.55 -61.15 -0.34 -5.34 16 19 C 0.58 5.14 7.81 -12.19 -0.10 5.04 16 20 O -0.52 -6.00 16.35 5.35 0.09 -5.92 16 21 C 0.03 0.21 6.75 -82.84 -0.56 -0.35 16 22 C 0.11 0.81 10.77 -17.00 -0.18 0.63 16 23 N -0.44 -3.04 10.49 -12.71 -0.13 -3.18 16 24 C 0.07 0.31 11.23 -17.24 -0.19 0.12 16 25 C 0.05 0.22 11.22 -17.39 -0.20 0.02 16 26 N -0.41 -2.75 9.71 -9.61 -0.09 -2.84 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 29 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.13 1.36 8.14 -51.92 -0.42 0.93 16 33 H 0.13 1.45 8.14 -51.93 -0.42 1.02 16 34 H 0.42 2.81 8.62 -34.47 -0.30 2.51 16 35 H 0.09 0.64 7.70 -51.93 -0.40 0.24 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.41 2.35 7.82 -40.82 -0.32 2.03 16 40 H 0.18 1.17 7.65 -52.49 -0.40 0.77 16 41 H 0.18 0.11 8.06 -52.49 -0.42 -0.32 16 42 H 0.18 0.14 8.06 -52.48 -0.42 -0.28 16 LS Contribution 377.42 15.07 5.69 5.69 Total: -1.00 -39.07 377.42 -8.69 -47.76 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.58 Total: -0.11 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -1.73 Total: -16.29 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 0.15 Total: -47.46 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -1.96 Total: -38.33 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.37 kcal Atomic # 16 Polarization: 32.97 SS G_CDS: -0.59 Total: 32.38 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -39.07 -8.69 -47.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345128484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.269 kcal (2) G-P(sol) polarization free energy of solvation -39.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds