Wall clock time and date at job start Wed Apr 1 2020 00:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99830 * 2 1 4 4 H 1.48497 * 109.46950 * 269.99666 * 3 2 1 5 5 H 1.48496 * 109.46874 * 29.99687 * 3 2 1 6 6 H 1.48499 * 109.47153 * 149.99849 * 3 2 1 7 7 C 1.37877 * 120.00706 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99368 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00515 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47264 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47397 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.47487 * 179.97438 * 11 10 9 13 13 O 1.42097 * 110.54009 * 68.37772 * 12 11 10 14 14 O 1.42094 * 110.54030 * 291.62654 * 12 11 10 15 15 N 1.65594 * 104.44984 * 179.97438 * 12 11 10 16 16 C 1.46508 * 120.00163 * 64.99935 * 15 12 11 17 17 C 1.53001 * 109.47159 * 164.99709 * 16 15 12 18 18 N 1.46498 * 109.46777 * 180.02562 * 17 16 15 19 19 C 1.34776 * 119.99780 * 180.02562 * 18 17 16 20 20 O 1.21515 * 120.00160 * 359.97438 * 19 18 17 21 21 C 1.48148 * 120.00017 * 180.02562 * 19 18 17 22 22 C 1.39443 * 120.09698 * 180.02562 * 21 19 18 23 23 N 1.32079 * 119.87260 * 179.97438 * 22 21 19 24 24 C 1.32142 * 120.07304 * 359.97438 * 23 22 21 25 25 C 1.38724 * 120.19178 * 0.28422 * 24 23 22 26 26 N 1.31797 * 120.12804 * 359.43155 * 25 24 23 27 27 H 0.96991 * 120.00313 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46930 * 60.00257 * 9 7 2 29 29 H 1.09001 * 109.46764 * 300.00072 * 9 7 2 30 30 H 1.09006 * 109.46704 * 59.99688 * 10 9 7 31 31 H 1.09002 * 109.46921 * 300.00415 * 10 9 7 32 32 H 1.09008 * 109.46988 * 59.99526 * 11 10 9 33 33 H 1.08998 * 109.47027 * 300.00379 * 11 10 9 34 34 H 0.96999 * 120.00138 * 244.99901 * 15 12 11 35 35 H 1.09001 * 109.46861 * 45.00046 * 16 15 12 36 36 H 1.08995 * 109.47058 * 285.00465 * 16 15 12 37 37 H 1.09001 * 109.46959 * 60.00397 * 17 16 15 38 38 H 1.09002 * 109.46922 * 300.00350 * 17 16 15 39 39 H 0.97003 * 120.00291 * 359.97438 * 18 17 16 40 40 H 1.07999 * 120.06715 * 359.94846 * 22 21 19 41 41 H 1.08002 * 119.90049 * 180.02562 * 24 23 22 42 42 H 1.08008 * 119.93444 * 179.69733 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0010 11 6 5.5517 -2.6364 0.0009 12 16 6.1565 -4.3466 0.0016 13 8 5.8604 -4.9806 -1.2352 14 8 5.8604 -4.9797 1.2387 15 7 7.8060 -4.2015 0.0007 16 6 8.4893 -3.6026 1.1500 17 6 9.9844 -3.9191 1.0762 18 7 10.6675 -3.3207 2.2257 19 6 11.9992 -3.4696 2.3707 20 8 12.6331 -4.1006 1.5482 21 6 12.6899 -2.8650 3.5335 22 6 14.0677 -3.0173 3.6852 23 7 14.6790 -2.4760 4.7233 24 6 13.9867 -1.7908 5.6162 25 6 12.6151 -1.6419 5.4709 26 7 11.9980 -2.1741 4.4351 27 1 -0.4850 0.8399 -0.0004 28 1 3.8746 -0.6799 0.8911 29 1 3.8752 -0.6802 -0.8889 30 1 3.6587 -3.1500 -0.8893 31 1 3.6580 -3.1504 0.8907 32 1 5.9150 -2.1225 0.8910 33 1 5.9149 -2.1224 -0.8890 34 1 8.3199 -4.5131 -0.7607 35 1 8.0764 -4.0120 2.0720 36 1 8.3454 -2.5223 1.1357 37 1 10.3974 -3.5097 0.1542 38 1 10.1282 -4.9995 1.0905 39 1 10.1616 -2.8166 2.8821 40 1 14.6337 -3.5773 2.9555 41 1 14.4895 -1.3489 6.4638 42 1 12.0526 -1.0852 6.2059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345128484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:15 Heat of formation + Delta-G solvation = -100.563534 kcal Electronic energy + Delta-G solvation = -25932.694298 eV Core-core repulsion = 21845.606138 eV Total energy + Delta-G solvation = -4087.088161 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.29960 -40.48325 -38.21872 -37.43997 -37.01871 -36.47851 -35.67744 -34.82885 -34.23109 -32.79909 -30.13544 -29.60555 -26.45539 -25.55372 -25.37740 -23.78956 -22.31062 -22.09416 -20.36730 -19.49394 -18.97499 -18.81831 -18.43147 -17.81396 -17.39418 -17.27592 -16.91696 -16.78792 -16.24863 -16.15069 -15.94929 -15.86620 -15.43814 -15.05355 -14.98731 -14.83134 -14.06301 -13.87621 -13.64310 -13.44015 -13.29594 -13.16972 -13.16234 -13.04794 -12.81675 -12.68989 -12.63676 -12.51919 -12.42068 -11.82649 -11.63893 -11.61852 -11.39376 -11.29519 -10.76435 -10.60021 -10.45654 -10.23861 -10.19411 -8.28598 -6.34618 -0.74238 -0.70883 -0.03447 1.38128 1.40633 1.52183 1.55953 1.57462 2.06926 2.37491 2.69447 2.79168 2.88987 3.06633 3.18077 3.26111 3.36973 3.57503 3.74782 3.78029 3.97349 4.05958 4.08553 4.31340 4.36271 4.40986 4.45940 4.52813 4.65922 4.83304 4.88688 4.93471 4.99316 5.21030 5.26575 5.37407 5.48783 5.64331 5.99719 6.06025 6.26594 6.27548 6.60555 6.74099 6.94728 7.30018 8.88333 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.002063 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.556660 B =13567.049489 C =15373.695860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.002 4.002 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.235 1.235 7 C -0.544 4.544 8 H 0.028 0.972 9 C -0.006 4.006 10 C -0.106 4.106 11 C -0.609 4.609 12 S 2.631 3.369 13 O -0.994 6.994 14 O -0.991 6.991 15 N -1.108 6.108 16 C 0.097 3.903 17 C 0.114 3.886 18 N -0.698 5.698 19 C 0.576 3.424 20 O -0.559 6.559 21 C 0.009 3.991 22 C 0.100 3.900 23 N -0.464 5.464 24 C 0.084 3.916 25 C 0.058 3.942 26 N -0.424 5.424 27 H 0.266 0.734 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.428 0.572 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.422 0.578 40 H 0.179 0.821 41 H 0.216 0.784 42 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.495 -0.898 11.048 34.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.198 4.198 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.158 1.158 7 C -0.582 4.582 8 H 0.047 0.953 9 C -0.044 4.044 10 C -0.145 4.145 11 C -0.740 4.740 12 S 2.727 3.273 13 O -0.984 6.984 14 O -0.981 6.981 15 N -0.870 5.870 16 C -0.029 4.029 17 C -0.011 4.011 18 N -0.350 5.350 19 C 0.360 3.640 20 O -0.438 6.438 21 C -0.130 4.130 22 C -0.058 4.058 23 N -0.178 5.178 24 C -0.077 4.077 25 C -0.105 4.105 26 N -0.142 5.142 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.177 0.823 33 H 0.175 0.825 34 H 0.264 0.736 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.261 0.739 40 H 0.196 0.804 41 H 0.233 0.767 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 32.208 -2.088 10.538 33.953 hybrid contribution -0.406 1.142 -0.213 1.230 sum 31.802 -0.946 10.325 33.450 Atomic orbital electron populations 1.70086 1.08581 1.28282 1.52411 1.26152 0.95720 1.04014 0.93957 0.85570 0.79792 0.77452 0.79276 1.19188 1.21304 1.15751 1.21583 0.92537 0.93190 1.50896 0.95330 1.19513 0.93507 0.93591 0.97799 1.21185 0.90767 1.00354 1.02178 1.30499 1.05226 1.24006 1.14269 1.04175 0.72997 0.77458 0.72691 1.93550 1.83615 1.74678 1.46568 1.93542 1.83839 1.73774 1.46930 1.55170 1.25104 1.78429 1.28266 1.21605 0.91873 1.00316 0.89156 1.21530 0.90800 0.99420 0.89387 1.45583 1.07184 1.54617 1.27617 1.17812 0.82495 0.79612 0.84073 1.90811 1.66548 1.42408 1.43987 1.21912 0.93657 1.00745 0.96706 1.23855 0.91985 0.94656 0.95347 1.68694 1.39622 1.07248 1.02218 1.24885 0.93375 0.91848 0.97623 1.24602 0.94276 0.96448 0.95203 1.68333 1.39548 1.04644 1.01692 0.92498 0.94672 0.95134 0.92071 0.91760 0.82285 0.82471 0.73552 0.89261 0.87800 0.89466 0.90783 0.73946 0.80354 0.76734 0.76507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 2 C 0.00 -0.11 5.47 84.66 0.46 0.35 16 3 Si 0.96 42.23 27.47 68.60 1.88 44.11 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.23 -9.10 6.54 99.48 0.65 -8.45 16 7 C -0.54 -30.95 9.66 25.60 0.25 -30.71 16 8 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 9 C -0.01 -0.24 4.04 29.85 0.12 -0.12 16 10 C -0.11 -3.79 5.16 30.59 0.16 -3.63 16 11 C -0.61 -13.80 6.07 71.98 0.44 -13.37 16 12 S 2.63 62.29 5.46 -56.49 -0.31 61.99 16 13 O -0.99 -31.09 18.08 -127.65 -2.31 -33.40 16 14 O -0.99 -30.27 17.50 -127.65 -2.23 -32.51 16 15 N -1.11 -15.93 5.89 -187.48 -1.10 -17.03 16 16 C 0.10 1.05 6.25 86.38 0.54 1.59 16 17 C 0.11 1.36 5.82 86.38 0.50 1.86 16 18 N -0.70 -8.89 5.55 -465.68 -2.58 -11.47 16 19 C 0.58 10.06 7.81 86.88 0.68 10.74 16 20 O -0.56 -13.12 16.35 -3.76 -0.06 -13.18 16 21 C 0.01 0.14 6.75 41.89 0.28 0.42 16 22 C 0.10 1.46 10.77 84.95 0.92 2.37 16 23 N -0.46 -5.86 10.49 -194.12 -2.04 -7.90 16 24 C 0.08 0.46 11.23 84.76 0.95 1.41 16 25 C 0.06 0.30 11.22 84.81 0.95 1.25 16 26 N -0.42 -4.83 9.71 -184.33 -1.79 -6.62 16 27 H 0.27 15.48 8.31 -92.72 -0.77 14.70 16 28 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 29 H 0.03 1.24 7.57 -2.39 -0.02 1.22 16 30 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 31 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.16 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.16 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.43 4.81 8.62 -96.75 -0.83 3.97 16 35 H 0.09 1.04 7.70 -2.39 -0.02 1.02 16 36 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.42 3.92 7.82 -92.71 -0.73 3.19 16 40 H 0.18 2.51 7.65 -2.91 -0.02 2.49 16 41 H 0.22 -0.63 8.06 -2.91 -0.02 -0.66 16 42 H 0.22 -0.66 8.06 -2.91 -0.02 -0.68 16 Total: -1.00 -88.62 377.42 -4.54 -93.16 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -0.55 Total: 10.01 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: 6.25 Total: -27.83 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -7.21 Total: -102.35 kcal Atomic # 8 Polarization: -74.48 SS G_CDS: -4.60 Total: -79.08 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.88 Total: 44.11 kcal Atomic # 16 Polarization: 62.29 SS G_CDS: -0.31 Total: 61.99 kcal Total: -88.62 -4.54 -93.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345128484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.404 kcal (2) G-P(sol) polarization free energy of solvation -88.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds