Wall clock time and date at job start Wed Apr 1 2020 01:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48490 * 109.47339 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 120.00108 * 9 7 5 12 12 H 1.48504 * 109.46636 * 239.99667 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21588 * 119.99628 * 359.97438 * 14 13 3 16 16 N 1.34767 * 120.00297 * 180.02562 * 14 13 3 17 17 C 1.39081 * 120.00441 * 179.97438 * 16 14 13 18 18 N 1.29897 * 125.64982 * 0.02562 * 17 16 14 19 19 N 1.26246 * 117.65182 * 179.97438 * 18 17 16 20 20 C 1.29498 * 116.58895 * 359.97438 * 19 18 17 21 21 C 1.50701 * 126.14216 * 180.02562 * 20 19 18 22 22 C 1.53000 * 109.47399 * 90.02446 * 21 20 19 23 23 C 1.50696 * 109.47559 * 179.97438 * 22 21 20 24 24 O 1.20830 * 119.99752 * 0.02562 * 23 22 21 25 25 O 1.34223 * 120.00186 * 179.97438 * 23 22 21 26 26 C 1.45203 * 117.00226 * 179.97438 * 25 23 22 27 27 S 1.71311 * 125.65763 * 179.71303 * 17 16 14 28 28 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 30 30 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 31 31 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 32 32 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 33 33 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 34 34 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 35 35 H 0.97003 * 119.99842 * 359.97438 * 16 14 13 36 36 H 1.09001 * 109.46813 * 210.02611 * 21 20 19 37 37 H 1.09000 * 109.47221 * 330.02493 * 21 20 19 38 38 H 1.08999 * 109.47456 * 300.00383 * 22 21 20 39 39 H 1.09000 * 109.46896 * 59.99848 * 22 21 20 40 40 H 1.09003 * 109.46844 * 60.00159 * 26 25 23 41 41 H 1.08999 * 109.47154 * 180.02562 * 26 25 23 42 42 H 1.08999 * 109.47301 * 300.00608 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.5992 1.5338 0.1874 11 1 6.4051 1.6106 2.6036 12 1 6.4917 -0.5266 1.4610 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3416 2.6319 -0.4320 16 7 0.0783 3.2665 -2.5187 17 6 -1.1781 3.8511 -2.6377 18 7 -2.0897 3.8814 -1.7128 19 7 -3.1810 4.4552 -1.9844 20 6 -3.2887 4.9644 -3.1701 21 6 -4.4881 5.6935 -3.7187 22 6 -4.3583 7.1880 -3.4179 23 6 -5.5573 7.9171 -3.9670 24 8 -6.4269 7.3042 -4.5398 25 8 -5.6599 9.2472 -3.8188 26 6 -6.8416 9.8831 -4.3734 27 16 -1.7771 4.6571 -4.0256 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 3.8292 -0.0558 2.9526 34 1 2.2719 2.1232 -1.9978 35 1 0.6978 3.2922 -3.2647 36 1 -4.5427 5.5433 -4.7970 37 1 -5.3937 5.3062 -3.2517 38 1 -4.3036 7.3382 -2.3397 39 1 -3.4527 7.5752 -3.8849 40 1 -7.7326 9.4666 -3.9036 41 1 -6.7990 10.9559 -4.1853 42 1 -6.8801 9.7042 -5.4479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354758680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:36 Heat of formation + Delta-G solvation = -70.235598 kcal Electronic energy + Delta-G solvation = -26442.139977 eV Core-core repulsion = 22356.366934 eV Total energy + Delta-G solvation = -4085.773043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.40855 -41.49831 -41.08863 -37.74430 -37.48541 -36.16462 -35.16791 -34.30617 -32.78828 -31.06793 -29.23295 -28.70991 -27.34913 -25.55009 -24.87644 -23.38169 -21.85527 -21.58292 -20.96094 -20.79068 -19.19477 -18.80315 -18.48270 -17.76651 -17.65106 -17.52506 -17.20937 -16.90088 -16.20768 -15.95951 -15.53606 -15.21572 -15.01417 -14.57447 -14.52408 -14.30423 -13.97842 -13.89348 -13.65617 -13.50490 -13.18960 -12.87425 -12.84685 -12.71360 -12.40464 -12.34753 -12.18215 -12.05773 -11.78158 -11.70267 -11.61433 -11.55164 -11.32758 -11.04454 -10.78570 -10.57990 -10.53620 -9.96157 -9.55908 -8.15197 -6.32392 -0.55412 -0.50493 0.13481 1.15195 1.44620 1.46286 1.47556 1.52600 1.59872 1.79890 2.26321 2.42384 2.98282 3.15216 3.34439 3.63362 3.80897 3.95489 4.10351 4.24502 4.34116 4.37187 4.48746 4.55800 4.56651 4.73566 4.75708 4.80943 4.92834 4.98143 5.05947 5.22237 5.39233 5.42350 5.46662 5.60496 5.62609 5.82384 6.04372 6.16041 6.69074 6.75255 7.06767 7.34989 7.58050 7.73338 8.90698 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.028514 B = 0.001884 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.739322 B =14861.902568 C =15101.553272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 C 0.296 3.704 4 H -0.001 1.001 5 C -0.544 4.544 6 H 0.077 0.923 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.972 3.028 10 H -0.258 1.258 11 H -0.287 1.287 12 H -0.280 1.280 13 N -0.706 5.706 14 C 0.686 3.314 15 O -0.574 6.574 16 N -0.624 5.624 17 C 0.232 3.768 18 N -0.326 5.326 19 N -0.258 5.258 20 C -0.005 4.005 21 C -0.018 4.018 22 C -0.107 4.107 23 C 0.470 3.530 24 O -0.535 6.535 25 O -0.365 6.365 26 C 0.028 3.972 27 S 0.206 5.794 28 H 0.043 0.957 29 H 0.022 0.978 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.265 0.735 34 H 0.406 0.594 35 H 0.439 0.561 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.137 0.863 40 H 0.060 0.940 41 H 0.128 0.872 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.316 16.326 -20.592 29.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.017 0.983 5 C -0.583 4.583 6 H 0.095 0.905 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.797 3.203 10 H -0.182 1.182 11 H -0.213 1.213 12 H -0.206 1.206 13 N -0.360 5.360 14 C 0.384 3.616 15 O -0.448 6.448 16 N -0.281 5.281 17 C -0.139 4.139 18 N -0.171 5.171 19 N -0.094 5.094 20 C -0.288 4.288 21 C -0.059 4.059 22 C -0.146 4.146 23 C 0.315 3.685 24 O -0.425 6.425 25 O -0.282 6.282 26 C -0.065 4.065 27 S 0.446 5.554 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.241 0.759 35 H 0.280 0.720 36 H 0.138 0.862 37 H 0.121 0.879 38 H 0.136 0.864 39 H 0.154 0.846 40 H 0.079 0.921 41 H 0.146 0.854 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.206 15.868 -19.355 28.299 hybrid contribution 1.148 -0.343 0.131 1.205 sum -12.058 15.525 -19.224 27.495 Atomic orbital electron populations 1.21641 0.97324 0.98830 0.99992 1.21813 0.93296 0.99282 1.01562 1.18341 0.93730 0.88768 0.79907 0.98287 1.21569 0.90962 1.39028 1.06701 0.90494 1.25778 1.03309 0.94419 0.95044 1.70068 1.37041 1.38447 1.09777 0.85294 0.79059 0.77728 0.78206 1.18161 1.21321 1.20606 1.45404 1.13385 1.58366 1.18817 1.16251 0.83560 0.79263 0.82560 1.91049 1.52165 1.62925 1.38646 1.41970 1.12456 1.56604 1.17097 1.25949 0.92543 0.99538 0.95851 1.71597 0.97385 1.20489 1.27594 1.71418 1.13351 1.08770 1.15828 1.30158 1.00576 1.05249 0.92816 1.19981 0.91405 0.91388 1.03171 1.21391 0.95691 0.92484 1.05018 1.23807 0.87673 0.81180 0.75885 1.90691 1.42307 1.68387 1.41070 1.86505 1.46096 1.22490 1.73072 1.23548 0.84795 0.99066 0.99130 1.84172 1.09493 1.50539 1.11235 0.93831 0.95858 0.94280 0.93581 0.90841 0.92614 0.75873 0.71992 0.86155 0.87894 0.86404 0.84553 0.92088 0.85394 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.51 71.98 0.61 -5.02 16 2 C -0.12 -5.89 5.45 30.60 0.17 -5.72 16 3 C 0.30 14.84 2.24 44.24 0.10 14.94 16 4 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 5 C -0.54 -27.73 8.73 25.60 0.22 -27.50 16 6 H 0.08 3.60 7.74 -2.92 -0.02 3.58 16 7 C 0.01 0.77 5.29 84.66 0.45 1.22 16 8 N -0.92 -51.80 11.31 21.45 0.24 -51.56 16 9 Si 0.97 41.09 29.54 68.60 2.03 43.12 16 10 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 11 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 13 N -0.71 -27.65 5.03 -461.41 -2.32 -29.97 16 14 C 0.69 27.20 7.10 179.06 1.27 28.47 16 15 O -0.57 -28.87 12.16 -3.99 -0.05 -28.91 16 16 N -0.62 -17.58 5.41 -326.97 -1.77 -19.35 16 17 C 0.23 6.74 8.14 179.10 1.46 8.20 16 18 N -0.33 -12.22 9.73 -59.09 -0.58 -12.79 16 19 N -0.26 -8.13 11.65 -47.69 -0.56 -8.69 16 20 C 0.00 -0.10 7.05 88.45 0.62 0.52 16 21 C -0.02 -0.24 5.13 29.85 0.15 -0.09 16 22 C -0.11 -1.17 5.79 29.85 0.17 -1.00 16 23 C 0.47 6.89 7.96 71.23 0.57 7.46 16 24 O -0.53 -10.68 15.73 21.95 0.35 -10.33 16 25 O -0.37 -4.93 10.56 -51.34 -0.54 -5.48 16 26 C 0.03 0.24 10.56 113.37 1.20 1.44 16 27 S 0.21 3.39 23.31 -56.49 -1.32 2.07 16 28 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.02 1.18 7.84 -2.39 -0.02 1.16 16 30 H 0.04 1.78 5.64 -2.39 -0.01 1.77 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.07 4.03 5.96 -2.39 -0.01 4.02 16 33 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 34 H 0.41 12.55 8.55 -92.71 -0.79 11.76 16 35 H 0.44 7.75 8.84 -92.71 -0.82 6.94 16 36 H 0.12 1.16 8.10 -2.39 -0.02 1.14 16 37 H 0.10 1.63 8.10 -2.39 -0.02 1.61 16 38 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 41 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.07 0.55 8.13 -2.39 -0.02 0.53 16 Total: -1.00 -80.12 371.33 1.96 -78.17 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -0.52 Total: 20.80 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: 6.99 Total: 22.92 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -4.98 Total: -122.36 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -0.25 Total: -44.72 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.32 Total: 2.07 kcal Total: -80.12 1.96 -78.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354758680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.933 kcal (2) G-P(sol) polarization free energy of solvation -80.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds