Wall clock time and date at job start Wed Apr 1 2020 01:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40429 * 107.86663 * 179.88433 * 3 2 1 5 5 N 1.40078 * 125.97471 * 180.15349 * 4 3 2 6 6 C 1.34778 * 120.00145 * 0.24675 * 5 4 3 7 7 O 1.21654 * 119.99626 * 359.97438 * 6 5 4 8 8 C 1.47166 * 120.00011 * 180.02562 * 6 5 4 9 9 C 1.38863 * 120.90311 * 0.02562 * 8 6 5 10 10 C 1.39928 * 119.42861 * 180.02562 * 9 8 6 11 11 C 1.35023 * 121.27435 * 359.97438 * 10 9 8 12 12 N 1.36257 * 121.57866 * 0.02562 * 11 10 9 13 13 C 1.36369 * 133.87611 * 180.02562 * 12 11 10 14 14 O 1.35715 * 126.33366 * 359.95582 * 13 12 11 15 15 N 1.31116 * 107.32851 * 179.19444 * 13 12 11 16 16 N 1.28692 * 110.30722 * 0.69192 * 15 13 12 17 17 C 1.31480 * 109.67208 * 359.38726 * 16 15 13 18 18 N 1.31234 * 108.04785 * 0.38170 * 4 3 2 19 19 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 20 20 C 1.46499 * 125.97289 * 359.95817 * 19 2 1 21 21 C 1.50699 * 109.47148 * 90.00237 * 20 19 2 22 22 H 1.07995 * 120.00097 * 359.97438 * 21 20 19 23 23 C 1.37877 * 119.99909 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99838 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00311 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46821 * 59.99647 * 25 23 21 27 27 H 1.48495 * 109.47602 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47001 * 300.00346 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 32 32 H 1.08003 * 126.06492 * 359.97438 * 3 2 1 33 33 H 0.97001 * 119.99567 * 180.24511 * 5 4 3 34 34 H 1.07997 * 120.28671 * 0.02562 * 9 8 6 35 35 H 1.08009 * 119.36763 * 179.97438 * 10 9 8 36 36 H 1.07998 * 119.20742 * 180.02562 * 11 10 9 37 37 H 0.96695 * 114.00294 * 90.00239 * 14 13 12 38 38 H 1.09005 * 109.47089 * 210.00172 * 20 19 2 39 39 H 1.09001 * 109.46954 * 329.99540 * 20 19 2 40 40 H 0.97007 * 120.00001 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0027 5 7 4.7730 1.4744 0.0066 6 6 4.6362 2.8152 0.0131 7 8 3.5264 3.3133 0.0151 8 6 5.8295 3.6765 0.0167 9 6 7.1051 3.1278 0.0129 10 6 8.2183 3.9757 0.0169 11 6 8.0766 5.3185 0.0240 12 7 6.8473 5.9063 0.0280 13 6 6.4186 7.2008 0.0345 14 8 7.2037 8.3078 0.0399 15 7 5.1078 7.1782 0.0181 16 7 4.6820 5.9638 0.0162 17 6 5.7039 5.1365 0.0183 18 7 3.6337 -0.6578 -0.0041 19 7 2.3016 -1.0910 -0.0059 20 6 1.8499 -2.4846 -0.0126 21 6 1.6942 -2.9554 -1.4357 22 1 1.9098 -2.2836 -2.2533 23 6 1.2766 -4.2438 -1.6938 24 7 1.0136 -5.0617 -0.6980 25 14 1.0829 -4.8272 -3.4577 26 1 2.3881 -4.7259 -4.1587 27 1 0.6251 -6.2398 -3.4645 28 1 0.0809 -3.9793 -4.1523 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9718 2.1210 -0.0004 33 1 5.6579 1.0770 0.0047 34 1 7.2370 2.0560 0.0068 35 1 9.2100 3.5479 0.0144 36 1 8.9587 5.9415 0.0266 37 1 7.4311 8.6331 -0.8418 38 1 2.5848 -3.1072 0.4977 39 1 0.8916 -2.5583 0.5015 40 1 0.7194 -5.9681 -0.8796 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357261805.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:20 Heat of formation + Delta-G solvation = 135.873145 kcal Electronic energy + Delta-G solvation = -28081.868848 eV Core-core repulsion = 23901.882150 eV Total energy + Delta-G solvation = -4179.986697 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.123 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.93275 -40.81231 -39.56585 -38.38111 -38.14797 -34.98227 -34.21626 -33.33590 -31.72921 -31.36756 -30.82033 -29.40223 -26.83359 -26.35730 -25.54260 -23.97696 -23.59403 -22.84491 -21.73837 -20.10069 -19.93235 -19.11489 -18.45324 -17.72461 -17.37578 -16.81589 -16.69003 -16.07736 -15.85283 -15.40151 -15.35791 -15.00172 -14.71289 -14.25491 -13.99218 -13.49373 -13.24915 -13.06492 -12.97906 -12.74670 -12.47158 -12.32456 -12.20452 -12.12850 -11.69273 -11.49964 -11.40001 -11.09834 -10.83761 -10.80188 -10.50231 -10.25936 -10.07708 -10.02113 -9.68413 -9.56834 -8.65112 -8.64205 -7.96505 -7.48324 -6.26543 -4.34381 -0.35278 0.48780 1.32515 2.05059 2.21318 2.56915 2.74222 3.11092 3.13536 3.22742 3.26652 3.30757 3.49123 3.62229 3.73947 3.84826 4.03502 4.18234 4.29196 4.38810 4.82422 4.91237 5.07015 5.12771 5.21542 5.32394 5.43617 5.53752 5.70233 5.93116 5.98345 6.12112 6.19836 6.47974 6.53328 6.68584 6.72065 6.92879 7.03836 7.36241 7.59154 7.66055 7.87566 8.02997 8.08755 8.12101 8.60826 8.73320 9.32022 10.80625 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.022934 B = 0.002173 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.603156 B =12883.146319 C =13412.366020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 C -0.287 4.287 4 C 0.263 3.737 5 N -0.623 5.623 6 C 0.564 3.436 7 O -0.474 6.474 8 C -0.076 4.076 9 C -0.041 4.041 10 C -0.143 4.143 11 C 0.092 3.908 12 N -0.408 5.408 13 C 0.315 3.685 14 O -0.427 6.427 15 N -0.237 5.237 16 N -0.234 5.234 17 C 0.234 3.766 18 N -0.319 5.319 19 N -0.315 5.315 20 C 0.259 3.741 21 C -0.537 4.537 22 H 0.064 0.936 23 C 0.066 3.934 24 N -0.891 5.891 25 Si 0.906 3.094 26 H -0.275 1.275 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.162 0.838 33 H 0.408 0.592 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.174 0.826 37 H 0.405 0.595 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.475 19.609 1.265 26.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.038 4.038 3 C -0.318 4.318 4 C 0.011 3.989 5 N -0.272 5.272 6 C 0.348 3.652 7 O -0.346 6.346 8 C -0.084 4.084 9 C -0.065 4.065 10 C -0.165 4.165 11 C -0.030 4.030 12 N -0.101 5.101 13 C 0.016 3.984 14 O -0.226 6.226 15 N -0.087 5.087 16 N -0.080 5.080 17 C -0.018 4.018 18 N -0.149 5.149 19 N -0.098 5.098 20 C 0.141 3.859 21 C -0.576 4.576 22 H 0.082 0.918 23 C -0.138 4.138 24 N -0.529 5.529 25 Si 0.733 3.267 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.179 0.821 33 H 0.244 0.756 34 H 0.176 0.824 35 H 0.184 0.816 36 H 0.191 0.809 37 H 0.262 0.738 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.807 19.413 1.911 25.107 hybrid contribution 1.689 -0.244 -1.430 2.226 sum 17.496 19.169 0.482 25.957 Atomic orbital electron populations 1.20392 0.87813 1.03954 1.02616 1.21075 0.94994 0.87036 1.00701 1.21297 0.89633 1.00020 1.20856 1.18838 0.86853 0.89528 1.03655 1.42128 1.07778 1.04434 1.72844 1.17269 0.88283 0.81007 0.78613 1.90872 1.25029 1.73371 1.45287 1.19951 0.94344 0.87106 1.06957 1.21931 0.90275 1.01615 0.92696 1.20822 1.00994 0.91114 1.03564 1.21790 0.86700 0.95380 0.99132 1.44091 1.08239 1.08414 1.49371 1.21834 0.88225 0.78462 1.09917 1.85024 1.67080 1.36064 1.34437 1.74773 1.04026 1.14331 1.15572 1.75072 1.21090 0.93329 1.18493 1.22484 0.81962 0.92678 1.04683 1.77239 1.00129 1.08244 1.29316 1.49008 1.00866 1.07843 1.52056 1.19699 0.96022 0.71252 0.98925 1.21284 1.46981 0.97960 0.91344 0.91769 1.24927 0.94662 0.96044 0.98130 1.69913 1.44782 1.07029 1.31198 0.86411 0.78812 0.77669 0.83773 1.20008 1.20969 1.19903 0.91009 0.89892 0.90488 0.82098 0.75623 0.82386 0.81625 0.80866 0.73761 0.92974 0.92725 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.89 36.01 0.36 -1.18 16 2 C 0.09 1.96 6.92 -82.28 -0.57 1.39 16 3 C -0.29 -5.89 9.52 -39.83 -0.38 -6.27 16 4 C 0.26 5.21 8.11 -154.45 -1.25 3.95 16 5 N -0.62 -9.14 5.40 -12.18 -0.07 -9.21 16 6 C 0.56 8.39 7.74 -12.64 -0.10 8.29 16 7 O -0.47 -8.93 13.40 5.23 0.07 -8.86 16 8 C -0.08 -0.85 6.06 -102.70 -0.62 -1.47 16 9 C -0.04 -0.25 9.63 -38.72 -0.37 -0.62 16 10 C -0.14 -0.51 9.91 -40.09 -0.40 -0.91 16 11 C 0.09 0.44 10.94 -16.73 -0.18 0.25 16 12 N -0.41 -3.79 2.97 -62.51 -0.19 -3.97 16 13 C 0.32 3.26 9.41 -88.64 -0.83 2.42 16 14 O -0.43 -2.77 13.65 -18.85 -0.26 -3.03 16 15 N -0.24 -3.40 12.20 29.71 0.36 -3.04 16 16 N -0.23 -3.77 11.75 32.37 0.38 -3.39 16 17 C 0.23 3.02 7.75 -153.91 -1.19 1.82 16 18 N -0.32 -7.11 12.59 31.43 0.40 -6.72 16 19 N -0.32 -7.35 3.59 -58.33 -0.21 -7.56 16 20 C 0.26 6.53 5.81 -5.19 -0.03 6.50 16 21 C -0.54 -14.58 9.39 -34.44 -0.32 -14.91 16 22 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 23 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 25 Si 0.91 20.88 29.54 -169.99 -5.02 15.86 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.52 7.71 -51.93 -0.40 1.12 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.16 3.28 5.91 -52.48 -0.31 2.97 16 33 H 0.41 4.35 6.92 -40.82 -0.28 4.06 16 34 H 0.16 0.53 6.48 -52.49 -0.34 0.19 16 35 H 0.17 -0.04 8.06 -52.48 -0.42 -0.46 16 36 H 0.17 0.16 8.06 -52.49 -0.42 -0.26 16 37 H 0.41 0.37 9.06 45.56 0.41 0.78 16 38 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.05 1.37 7.65 -51.93 -0.40 0.97 16 40 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 356.62 15.07 5.37 5.37 Total: -1.00 -38.16 356.62 -7.39 -45.55 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -2.98 Total: 2.07 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -6.00 Total: 0.95 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 1.41 Total: -57.91 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.19 Total: -11.90 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -38.16 -7.39 -45.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357261805.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.428 kcal (2) G-P(sol) polarization free energy of solvation -38.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds