Wall clock time and date at job start Wed Apr 1 2020 01:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34227 * 117.00063 * 2 1 4 4 O 1.20832 * 119.99512 * 0.02562 * 3 2 1 5 5 C 1.50691 * 120.00077 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47100 * 180.02562 * 5 3 2 7 7 C 1.36943 * 119.99787 * 269.99544 * 6 5 3 8 8 H 1.08006 * 119.99808 * 16.23424 * 7 6 5 9 9 C 1.38814 * 119.99949 * 196.22822 * 7 6 5 10 10 N 1.31611 * 120.00050 * 22.13803 * 9 7 6 11 11 Si 1.86806 * 119.99737 * 202.13621 * 9 7 6 12 12 H 1.48501 * 109.47117 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.46944 * 120.00298 * 11 9 7 14 14 H 1.48494 * 109.46937 * 240.00171 * 11 9 7 15 15 C 1.46492 * 120.00428 * 89.99910 * 6 5 3 16 16 C 1.50701 * 109.47354 * 84.01052 * 15 6 5 17 17 O 1.21280 * 119.99773 * 359.97438 * 16 15 6 18 18 N 1.34781 * 120.00388 * 180.02562 * 16 15 6 19 19 C 1.39071 * 120.00170 * 180.02562 * 18 16 15 20 20 N 1.29890 * 125.65242 * 359.97438 * 19 18 16 21 21 N 1.26254 * 117.66320 * 179.70945 * 20 19 18 22 22 C 1.29530 * 116.57346 * 0.54735 * 21 20 19 23 23 C 1.50694 * 126.14186 * 179.76714 * 22 21 20 24 24 C 1.53003 * 109.47138 * 59.68884 * 23 22 21 25 25 C 1.53002 * 109.47319 * 299.69155 * 23 22 21 26 26 S 1.71305 * 125.65284 * 179.97438 * 19 18 16 27 27 H 1.08995 * 109.47062 * 299.99622 * 1 2 3 28 28 H 1.08999 * 109.46768 * 60.00159 * 1 2 3 29 29 H 1.09006 * 109.46790 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47222 * 60.00211 * 5 3 2 31 31 H 1.09000 * 109.47187 * 299.99463 * 5 3 2 32 32 H 0.97001 * 119.99929 * 179.97438 * 10 9 7 33 33 H 1.09000 * 109.47009 * 324.01377 * 15 6 5 34 34 H 1.08999 * 109.47696 * 204.00849 * 15 6 5 35 35 H 0.97002 * 119.99304 * 359.97438 * 18 16 15 36 36 H 1.08997 * 109.46902 * 179.68474 * 23 22 21 37 37 H 1.08997 * 109.47108 * 179.97438 * 24 23 22 38 38 H 1.08994 * 109.47244 * 300.00276 * 24 23 22 39 39 H 1.09008 * 109.46671 * 59.99979 * 24 23 22 40 40 H 1.08997 * 109.46694 * 180.02562 * 25 23 22 41 41 H 1.09003 * 109.46569 * 300.00127 * 25 23 22 42 42 H 1.08994 * 109.46959 * 59.99788 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1763 3.3366 -1.1847 8 1 3.7820 2.9240 -2.1016 9 6 4.8803 4.5327 -1.2081 10 7 5.7159 4.8237 -0.2338 11 14 4.6417 5.7294 -2.6225 12 1 3.6548 5.1715 -3.5818 13 1 4.1417 7.0247 -2.0960 14 1 5.9383 5.9434 -3.3139 15 6 4.1889 3.3819 1.2699 16 6 5.5786 3.0990 1.7796 17 8 6.3225 2.3810 1.1456 18 7 5.9944 3.6429 2.9405 19 6 7.2771 3.3822 3.4106 20 7 8.1612 2.6338 2.8229 21 7 9.2853 2.5047 3.3829 22 6 9.4480 3.1282 4.5066 23 6 10.6930 3.1200 5.3555 24 6 11.8660 3.6766 4.5459 25 6 11.0063 1.6861 5.7875 26 16 7.9529 3.9949 4.8606 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.9564 0.7806 -0.8891 31 1 3.9557 0.7810 0.8909 32 1 6.2082 5.6594 -0.2503 33 1 3.4569 3.0366 2.0000 34 1 4.0700 4.4543 1.1155 35 1 5.3993 4.2169 3.4478 36 1 10.5347 3.7392 6.2384 37 1 12.7664 3.6710 5.1601 38 1 12.0242 3.0575 3.6629 39 1 11.6427 4.6982 4.2382 40 1 11.9066 1.6803 6.4019 41 1 10.1706 1.2896 6.3642 42 1 11.1646 1.0670 4.9044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362507735.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:33 Heat of formation + Delta-G solvation = -17.761516 kcal Electronic energy + Delta-G solvation = -27669.832257 eV Core-core repulsion = 23586.334661 eV Total energy + Delta-G solvation = -4083.497596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.84003 -39.72982 -38.76100 -36.27029 -35.80065 -35.05967 -34.00523 -31.57864 -29.74438 -28.61183 -27.39488 -27.27296 -26.18152 -25.62704 -23.19599 -22.27889 -20.82825 -20.09283 -19.36453 -18.15872 -17.31336 -17.00447 -16.64834 -16.02410 -15.81075 -15.69238 -15.56965 -15.17838 -14.95003 -14.10578 -14.00575 -13.68189 -13.48294 -13.20319 -13.05703 -12.98796 -12.79068 -12.60899 -12.26683 -11.83991 -11.69507 -11.50406 -11.43100 -11.24013 -11.13398 -10.98779 -10.76484 -10.39806 -10.32823 -10.19919 -10.15254 -10.09083 -9.90048 -9.72502 -9.34377 -9.05717 -8.52873 -8.13634 -7.22612 -6.03285 -3.35698 0.85949 0.92373 1.50433 2.95472 3.03621 3.17818 3.31499 3.40674 3.44710 3.47318 3.95785 4.31210 4.39154 4.75155 4.96019 5.05730 5.13146 5.19442 5.24426 5.35793 5.41506 5.52161 5.53242 5.55222 5.73484 5.77864 5.81092 5.85795 5.91976 5.98372 6.12276 6.16908 6.22034 6.41486 6.70001 6.77754 6.96771 7.58094 7.76201 8.01362 8.50348 8.87326 9.06169 9.25768 9.53517 9.93445 11.07251 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.012373 B = 0.003199 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.419640 B = 8751.008271 C =10286.888437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.374 6.374 3 C 0.421 3.579 4 O -0.497 6.497 5 C 0.157 3.843 6 N -0.538 5.538 7 C -0.257 4.257 8 H 0.080 0.920 9 C 0.009 3.991 10 N -0.896 5.896 11 Si 0.911 3.089 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.290 1.290 15 C 0.170 3.830 16 C 0.511 3.489 17 O -0.449 6.449 18 N -0.633 5.633 19 C 0.270 3.730 20 N -0.279 5.279 21 N -0.219 5.219 22 C -0.011 4.011 23 C -0.001 4.001 24 C -0.142 4.142 25 C -0.141 4.141 26 S 0.046 5.954 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.257 0.743 33 H 0.048 0.952 34 H 0.115 0.885 35 H 0.413 0.587 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.965 -3.026 14.317 14.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.291 6.291 3 C 0.260 3.740 4 O -0.382 6.382 5 C 0.026 3.974 6 N -0.254 5.254 7 C -0.386 4.386 8 H 0.098 0.902 9 C -0.189 4.189 10 N -0.540 5.540 11 Si 0.741 3.259 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.217 1.217 15 C 0.039 3.961 16 C 0.295 3.705 17 O -0.312 6.312 18 N -0.286 5.286 19 C -0.101 4.101 20 N -0.123 5.123 21 N -0.054 5.054 22 C -0.295 4.295 23 C -0.024 4.024 24 C -0.201 4.201 25 C -0.200 4.200 26 S 0.285 5.715 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.132 0.868 35 H 0.249 0.751 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.264 -3.303 13.364 13.951 hybrid contribution -0.668 1.340 -0.508 1.581 sum 1.596 -1.963 12.856 13.102 Atomic orbital electron populations 1.23068 0.78556 1.02467 1.01871 1.86604 1.21971 1.35624 1.84924 1.26717 0.94596 0.80721 0.71921 1.90594 1.66933 1.36404 1.44268 1.20388 0.84736 0.88390 1.03883 1.43440 1.73324 1.05962 1.02667 1.19234 1.29931 1.03246 0.86163 0.90180 1.24787 0.96017 0.99664 0.98449 1.69898 1.25268 1.24252 1.34559 0.86081 0.77511 0.80902 0.81426 1.20146 1.21376 1.21715 1.20594 0.88034 1.00917 0.86578 1.22993 0.92310 0.78306 0.76940 1.90681 1.54714 1.34079 1.51738 1.44181 1.08603 1.50607 1.25210 1.26352 0.93810 0.96503 0.93407 1.71568 0.95853 1.19389 1.25540 1.71315 1.12262 1.17039 1.04804 1.29645 0.98872 1.02066 0.98900 1.19610 0.88426 0.98842 0.95549 1.21835 0.96211 1.01432 1.00600 1.21829 1.01480 0.94628 1.02043 1.84531 1.12086 1.51554 1.23286 0.92690 0.92558 0.89137 0.88303 0.89751 0.93280 0.93440 0.86768 0.75077 0.89443 0.91672 0.91330 0.92431 0.91676 0.92503 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.52 16 2 O -0.37 -6.22 10.57 -39.25 -0.41 -6.63 16 3 C 0.42 8.19 8.03 36.00 0.29 8.48 16 4 O -0.50 -11.06 16.18 -18.76 -0.30 -11.37 16 5 C 0.16 3.17 6.23 -5.20 -0.03 3.14 16 6 N -0.54 -12.80 1.52 -175.99 -0.27 -13.07 16 7 C -0.26 -6.82 9.66 -15.06 -0.15 -6.97 16 8 H 0.08 2.12 7.92 -52.48 -0.42 1.71 16 9 C 0.01 0.25 4.86 -17.43 -0.08 0.17 16 10 N -0.90 -24.39 9.31 55.49 0.52 -23.88 16 11 Si 0.91 21.57 29.61 -169.99 -5.03 16.53 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 C 0.17 3.69 5.37 -5.20 -0.03 3.66 16 16 C 0.51 11.36 6.01 -10.98 -0.07 11.29 16 17 O -0.45 -12.00 14.82 5.56 0.08 -11.91 16 18 N -0.63 -11.48 5.41 -12.92 -0.07 -11.55 16 19 C 0.27 5.04 8.14 -87.06 -0.71 4.33 16 20 N -0.28 -6.10 9.74 29.97 0.29 -5.81 16 21 N -0.22 -4.17 11.65 33.58 0.39 -3.78 16 22 C -0.01 -0.17 6.31 -13.25 -0.08 -0.25 16 23 C 0.00 -0.01 3.39 -91.77 -0.31 -0.32 16 24 C -0.14 -1.40 9.18 37.16 0.34 -1.06 16 25 C -0.14 -1.31 9.18 37.16 0.34 -0.97 16 26 S 0.05 0.63 23.31 -107.50 -2.51 -1.88 16 27 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.10 1.95 8.04 -51.93 -0.42 1.53 16 31 H 0.08 1.57 8.07 -51.93 -0.42 1.15 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.05 0.88 8.12 -51.93 -0.42 0.46 16 34 H 0.11 2.64 6.35 -51.93 -0.33 2.31 16 35 H 0.41 5.72 8.82 -40.82 -0.36 5.36 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -35.48 377.37 -6.77 -42.26 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.73 Total: 2.37 kcal Atomic # 6 Polarization: 22.44 SS G_CDS: 0.58 Total: 23.02 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: 0.86 Total: -58.08 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.64 Total: -29.91 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.53 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -2.51 Total: -1.88 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.48 -6.77 -42.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362507735.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.495 kcal (2) G-P(sol) polarization free energy of solvation -35.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds