Wall clock time and date at job start Wed Apr 1 2020 01:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34227 * 117.00063 * 2 1 4 4 O 1.20832 * 119.99512 * 0.02562 * 3 2 1 5 5 C 1.50691 * 120.00077 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47100 * 180.02562 * 5 3 2 7 7 C 1.36943 * 119.99787 * 269.99544 * 6 5 3 8 8 H 1.08006 * 119.99808 * 16.23424 * 7 6 5 9 9 C 1.38814 * 119.99949 * 196.22822 * 7 6 5 10 10 N 1.31611 * 120.00050 * 22.13803 * 9 7 6 11 11 Si 1.86806 * 119.99737 * 202.13621 * 9 7 6 12 12 H 1.48501 * 109.47117 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.46944 * 120.00298 * 11 9 7 14 14 H 1.48494 * 109.46937 * 240.00171 * 11 9 7 15 15 C 1.46492 * 120.00428 * 89.99910 * 6 5 3 16 16 C 1.50701 * 109.47354 * 84.01052 * 15 6 5 17 17 O 1.21280 * 119.99773 * 359.97438 * 16 15 6 18 18 N 1.34781 * 120.00388 * 180.02562 * 16 15 6 19 19 C 1.39071 * 120.00170 * 180.02562 * 18 16 15 20 20 N 1.29890 * 125.65242 * 359.97438 * 19 18 16 21 21 N 1.26254 * 117.66320 * 179.70945 * 20 19 18 22 22 C 1.29530 * 116.57346 * 0.54735 * 21 20 19 23 23 C 1.50694 * 126.14186 * 179.76714 * 22 21 20 24 24 C 1.53003 * 109.47138 * 59.68884 * 23 22 21 25 25 C 1.53002 * 109.47319 * 299.69155 * 23 22 21 26 26 S 1.71305 * 125.65284 * 179.97438 * 19 18 16 27 27 H 1.08995 * 109.47062 * 299.99622 * 1 2 3 28 28 H 1.08999 * 109.46768 * 60.00159 * 1 2 3 29 29 H 1.09006 * 109.46790 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47222 * 60.00211 * 5 3 2 31 31 H 1.09000 * 109.47187 * 299.99463 * 5 3 2 32 32 H 0.97001 * 119.99929 * 179.97438 * 10 9 7 33 33 H 1.09000 * 109.47009 * 324.01377 * 15 6 5 34 34 H 1.08999 * 109.47696 * 204.00849 * 15 6 5 35 35 H 0.97002 * 119.99304 * 359.97438 * 18 16 15 36 36 H 1.08997 * 109.46902 * 179.68474 * 23 22 21 37 37 H 1.08997 * 109.47108 * 179.97438 * 24 23 22 38 38 H 1.08994 * 109.47244 * 300.00276 * 24 23 22 39 39 H 1.09008 * 109.46671 * 59.99979 * 24 23 22 40 40 H 1.08997 * 109.46694 * 180.02562 * 25 23 22 41 41 H 1.09003 * 109.46569 * 300.00127 * 25 23 22 42 42 H 1.08994 * 109.46959 * 59.99788 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1763 3.3366 -1.1847 8 1 3.7820 2.9240 -2.1016 9 6 4.8803 4.5327 -1.2081 10 7 5.7159 4.8237 -0.2338 11 14 4.6417 5.7294 -2.6225 12 1 3.6548 5.1715 -3.5818 13 1 4.1417 7.0247 -2.0960 14 1 5.9383 5.9434 -3.3139 15 6 4.1889 3.3819 1.2699 16 6 5.5786 3.0990 1.7796 17 8 6.3225 2.3810 1.1456 18 7 5.9944 3.6429 2.9405 19 6 7.2771 3.3822 3.4106 20 7 8.1612 2.6338 2.8229 21 7 9.2853 2.5047 3.3829 22 6 9.4480 3.1282 4.5066 23 6 10.6930 3.1200 5.3555 24 6 11.8660 3.6766 4.5459 25 6 11.0063 1.6861 5.7875 26 16 7.9529 3.9949 4.8606 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.9564 0.7806 -0.8891 31 1 3.9557 0.7810 0.8909 32 1 6.2082 5.6594 -0.2503 33 1 3.4569 3.0366 2.0000 34 1 4.0700 4.4543 1.1155 35 1 5.3993 4.2169 3.4478 36 1 10.5347 3.7392 6.2384 37 1 12.7664 3.6710 5.1601 38 1 12.0242 3.0575 3.6629 39 1 11.6427 4.6982 4.2382 40 1 11.9066 1.6803 6.4019 41 1 10.1706 1.2896 6.3642 42 1 11.1646 1.0670 4.9044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362507735.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:31 Heat of formation + Delta-G solvation = -41.578204 kcal Electronic energy + Delta-G solvation = -27670.865026 eV Core-core repulsion = 23586.334661 eV Total energy + Delta-G solvation = -4084.530365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.21440 -41.24486 -40.36626 -37.78248 -36.97229 -36.57036 -35.56389 -33.48975 -31.17669 -30.07928 -28.90275 -28.02590 -27.67705 -26.99205 -24.72389 -23.71960 -22.16413 -21.63282 -20.70708 -19.56906 -19.02268 -18.51455 -18.12373 -17.41993 -17.30271 -17.24637 -16.96215 -16.70938 -16.19324 -15.74373 -15.40811 -15.03092 -14.91759 -14.73798 -14.30677 -14.23576 -14.13711 -14.03409 -13.38045 -13.06671 -12.94545 -12.85368 -12.73269 -12.67664 -12.52098 -12.24993 -12.12855 -12.07385 -12.01102 -11.85606 -11.64992 -11.57569 -11.40437 -11.08821 -10.79256 -10.51104 -10.34103 -9.57451 -9.07857 -8.01959 -5.35207 -0.40502 -0.31902 0.25041 1.40379 1.41961 1.46024 1.55871 1.64893 1.80916 2.08310 2.32794 2.50401 3.20578 3.25270 3.40468 3.76138 3.97234 4.16088 4.18296 4.24137 4.34652 4.36144 4.39734 4.42791 4.56750 4.65593 4.73179 4.82949 4.83406 4.95317 4.97381 5.01721 5.11243 5.27831 5.36663 5.43520 5.51591 5.55518 6.06724 6.36873 6.91212 7.01763 7.48626 7.66151 7.85883 8.01365 9.05707 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.012373 B = 0.003199 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.419640 B = 8751.008271 C =10286.888437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.372 6.372 3 C 0.435 3.565 4 O -0.527 6.527 5 C 0.155 3.845 6 N -0.558 5.558 7 C -0.265 4.265 8 H 0.071 0.929 9 C -0.034 4.034 10 N -0.912 5.912 11 Si 0.965 3.035 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.300 1.300 15 C 0.173 3.827 16 C 0.519 3.481 17 O -0.503 6.503 18 N -0.626 5.626 19 C 0.229 3.771 20 N -0.332 5.332 21 N -0.264 5.264 22 C -0.001 4.001 23 C -0.005 4.005 24 C -0.140 4.140 25 C -0.138 4.138 26 S 0.148 5.852 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.131 0.869 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.249 0.751 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.432 0.568 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.943 -2.788 16.973 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C 0.276 3.724 4 O -0.415 6.415 5 C 0.026 3.974 6 N -0.275 5.275 7 C -0.394 4.394 8 H 0.089 0.911 9 C -0.230 4.230 10 N -0.557 5.557 11 Si 0.794 3.206 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.227 1.227 15 C 0.042 3.958 16 C 0.303 3.697 17 O -0.371 6.371 18 N -0.280 5.280 19 C -0.142 4.142 20 N -0.177 5.177 21 N -0.098 5.098 22 C -0.285 4.285 23 C -0.028 4.028 24 C -0.199 4.199 25 C -0.197 4.197 26 S 0.389 5.611 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.150 0.850 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.271 0.729 36 H 0.141 0.859 37 H 0.117 0.883 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.115 0.885 41 H 0.077 0.923 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.212 -3.077 16.074 16.515 hybrid contribution -0.615 1.183 -1.143 1.756 sum 1.597 -1.894 14.932 15.136 Atomic orbital electron populations 1.23445 0.75896 1.05232 1.01952 1.86553 1.24380 1.33639 1.84196 1.26123 0.94126 0.80999 0.71188 1.90582 1.67493 1.37554 1.45905 1.20439 0.85408 0.87028 1.04561 1.43532 1.74206 1.07186 1.02528 1.19363 1.29274 1.03702 0.87075 0.91126 1.25374 0.96226 1.00898 1.00534 1.70051 1.25932 1.23939 1.35749 0.85251 0.76690 0.79353 0.79262 1.19894 1.20935 1.22746 1.20574 0.88673 0.99867 0.86641 1.22840 0.92042 0.77469 0.77345 1.90651 1.56038 1.36576 1.53789 1.43618 1.09188 1.50624 1.24598 1.26430 0.93691 0.97930 0.96112 1.71513 0.97180 1.20959 1.28005 1.71287 1.11894 1.19670 1.06997 1.30668 1.00695 0.99406 0.97694 1.20009 0.86542 1.00365 0.95921 1.21842 0.97387 1.00439 1.00256 1.21827 1.03064 0.93286 1.01521 1.84062 1.09483 1.48974 1.18596 0.92271 0.92905 0.85045 0.88412 0.88320 0.94151 0.90346 0.88488 0.72870 0.85929 0.88333 0.93759 0.92915 0.88469 0.92349 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.56 113.37 1.20 1.87 16 2 O -0.37 -11.80 10.57 -51.38 -0.54 -12.34 16 3 C 0.44 16.73 8.03 71.23 0.57 17.31 16 4 O -0.53 -23.37 16.18 21.95 0.36 -23.02 16 5 C 0.16 6.35 6.23 85.63 0.53 6.88 16 6 N -0.56 -27.09 1.52 -710.71 -1.08 -28.17 16 7 C -0.26 -14.41 9.66 84.03 0.81 -13.59 16 8 H 0.07 3.86 7.92 -2.91 -0.02 3.84 16 9 C -0.03 -1.86 4.86 84.86 0.41 -1.45 16 10 N -0.91 -51.10 9.31 21.65 0.20 -50.90 16 11 Si 0.97 45.40 29.61 68.60 2.03 47.43 16 12 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 15 C 0.17 7.63 5.37 85.64 0.46 8.09 16 16 C 0.52 23.65 6.01 87.66 0.53 24.18 16 17 O -0.50 -27.99 14.82 -3.03 -0.04 -28.04 16 18 N -0.63 -22.87 5.41 -313.16 -1.69 -24.57 16 19 C 0.23 8.57 8.14 179.11 1.46 10.03 16 20 N -0.33 -14.97 9.74 -59.10 -0.58 -15.55 16 21 N -0.26 -10.21 11.65 -47.67 -0.56 -10.77 16 22 C 0.00 -0.02 6.31 88.45 0.56 0.53 16 23 C -0.01 -0.09 3.39 -11.54 -0.04 -0.13 16 24 C -0.14 -2.46 9.18 71.98 0.66 -1.80 16 25 C -0.14 -2.22 9.18 71.98 0.66 -1.56 16 26 S 0.15 3.70 23.31 -56.49 -1.32 2.38 16 27 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 28 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 29 H 0.13 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.10 3.96 8.04 -2.39 -0.02 3.94 16 31 H 0.10 3.70 8.07 -2.39 -0.02 3.68 16 32 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 33 H 0.08 2.88 8.12 -2.39 -0.02 2.86 16 34 H 0.10 4.60 6.35 -2.39 -0.02 4.59 16 35 H 0.43 11.72 8.82 -92.71 -0.82 10.90 16 36 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.04 0.94 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -81.29 377.37 4.83 -76.46 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.24 Total: 16.73 kcal Atomic # 6 Polarization: 42.54 SS G_CDS: 7.81 Total: 50.35 kcal Atomic # 7 Polarization: -126.26 SS G_CDS: -3.70 Total: -129.96 kcal Atomic # 8 Polarization: -63.16 SS G_CDS: -0.23 Total: -63.39 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.32 Total: 2.38 kcal Total: -81.29 4.83 -76.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362507735.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.879 kcal (2) G-P(sol) polarization free energy of solvation -81.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds