Wall clock time and date at job start Wed Apr 1 2020 01:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47317 * 2 1 4 4 H 1.09004 * 109.47012 * 55.89936 * 3 2 1 5 5 C 1.50708 * 109.47134 * 175.88959 * 3 2 1 6 6 H 1.08000 * 119.99713 * 120.00222 * 5 3 2 7 7 C 1.37872 * 120.00346 * 300.00782 * 5 3 2 8 8 N 1.31519 * 120.00192 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00104 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47040 * 89.99795 * 9 7 5 11 11 H 1.48507 * 109.46872 * 209.99619 * 9 7 5 12 12 H 1.48495 * 109.47254 * 329.99690 * 9 7 5 13 13 N 1.46890 * 109.47630 * 295.89361 * 3 2 1 14 14 C 1.46897 * 111.00485 * 153.46072 * 13 3 2 15 15 C 1.50700 * 109.47763 * 185.33422 * 14 13 3 16 16 O 1.21297 * 119.99334 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00511 * 180.02562 * 15 14 13 18 18 C 1.40099 * 120.00166 * 184.94678 * 17 15 14 19 19 C 1.38843 * 120.00289 * 33.65660 * 18 17 15 20 20 C 1.38168 * 120.07092 * 180.02562 * 19 18 17 21 21 C 1.38562 * 120.11535 * 0.25260 * 20 19 18 22 22 C 1.39283 * 119.94213 * 359.45759 * 21 20 19 23 23 C 1.38491 * 119.89688 * 0.56222 * 22 21 20 24 24 O 1.36514 * 108.64270 * 180.32974 * 22 21 20 25 25 C 1.44340 * 105.37818 * 342.32252 * 24 22 21 26 26 F 1.39907 * 111.02372 * 268.95565 * 25 24 22 27 27 F 1.39899 * 110.41049 * 146.03193 * 25 24 22 28 28 O 1.36595 * 131.44235 * 179.72545 * 21 20 19 29 29 H 1.09005 * 109.46662 * 305.06839 * 1 2 3 30 30 H 1.09001 * 109.47427 * 65.06762 * 1 2 3 31 31 H 1.08998 * 109.47467 * 185.06735 * 1 2 3 32 32 H 1.09008 * 109.46616 * 240.00007 * 2 1 3 33 33 H 1.09003 * 109.47216 * 120.00897 * 2 1 3 34 34 H 0.96987 * 120.00441 * 180.02562 * 8 7 5 35 35 H 1.00906 * 111.00137 * 277.41833 * 13 3 2 36 36 H 1.09010 * 109.46935 * 65.33327 * 14 13 3 37 37 H 1.08998 * 109.47060 * 305.33792 * 14 13 3 38 38 H 0.97004 * 119.99868 * 4.93960 * 17 15 14 39 39 H 1.07995 * 119.96497 * 0.02562 * 19 18 17 40 40 H 1.07996 * 119.94521 * 179.97438 * 20 19 18 41 41 H 1.08003 * 120.01065 * 179.68641 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6179 1.9771 0.8510 5 6 3.5436 1.4436 0.1018 6 1 4.1374 1.8922 -0.6808 7 6 4.1611 0.8719 1.1940 8 7 3.4379 0.3259 2.1472 9 14 6.0248 0.8728 1.3198 10 1 6.4729 2.1020 2.0223 11 1 6.4701 -0.3224 2.0805 12 1 6.6130 0.8393 -0.0433 13 7 1.6331 2.1058 -1.2458 14 6 1.5215 3.5583 -1.0568 15 6 0.9780 4.1882 -2.3133 16 8 0.7094 3.4951 -3.2719 17 7 0.7903 5.5215 -2.3720 18 6 0.1890 6.0953 -3.4999 19 6 -0.7951 5.4011 -4.1909 20 6 -1.3886 5.9655 -5.3036 21 6 -1.0000 7.2232 -5.7363 22 6 -0.0174 7.9245 -5.0416 23 6 0.5773 7.3578 -3.9265 24 8 0.1783 9.1271 -5.6573 25 6 -0.3928 8.9799 -6.9747 26 9 0.5658 8.5324 -7.8902 27 9 -0.9518 10.1891 -7.4020 28 8 -1.4181 7.9862 -6.7893 29 1 -0.3633 0.5905 0.8412 30 1 -0.3634 0.4332 -0.9319 31 1 -0.3634 -1.0236 0.0908 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5140 0.8899 34 1 3.8723 -0.0759 2.9157 35 1 2.2702 1.8867 -1.9970 36 1 2.5058 3.9730 -0.8389 37 1 0.8477 3.7658 -0.2256 38 1 1.0713 6.0838 -1.6333 39 1 -1.0969 4.4190 -3.8582 40 1 -2.1535 5.4236 -5.8398 41 1 1.3430 7.8978 -3.3895 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565173511.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:09 Heat of formation + Delta-G solvation = -168.064127 kcal Electronic energy + Delta-G solvation = -28985.600692 eV Core-core repulsion = 24309.452348 eV Total energy + Delta-G solvation = -4676.148344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.122 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.83335 -48.29389 -42.56678 -40.36709 -37.93185 -37.31553 -36.04051 -34.54577 -32.58782 -31.23582 -31.01870 -29.43177 -27.30299 -25.62194 -25.14737 -23.82304 -23.28391 -22.49881 -20.79575 -19.68142 -19.63489 -19.35125 -19.05301 -18.01161 -17.38415 -16.74373 -16.58885 -15.97536 -15.53152 -15.40502 -15.00961 -14.98034 -14.76694 -14.55800 -14.52137 -14.48760 -14.24660 -14.02883 -13.71380 -13.59683 -13.35521 -13.27265 -12.72186 -12.45091 -12.08829 -11.96552 -11.79142 -11.30810 -11.23666 -10.96497 -10.75343 -10.36981 -10.25500 -9.97072 -9.64468 -9.53085 -9.26945 -9.16772 -8.47910 -8.30601 -7.43059 -6.10185 -4.24064 0.55952 0.69561 1.28669 1.79498 2.58775 2.86437 3.19719 3.21867 3.28408 3.31070 3.52328 3.61766 3.84160 4.30818 4.37819 4.47442 4.72864 4.82461 4.93479 5.14853 5.22016 5.31765 5.44680 5.55691 5.73655 5.83815 5.90425 5.95391 6.12499 6.35912 6.47444 6.54637 6.66930 6.99344 7.13667 7.17774 7.33524 7.48920 7.67965 7.96456 7.98115 8.12498 8.19283 8.50110 8.87354 9.44480 10.90028 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.021895 B = 0.002049 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.515638 B =13659.038957 C =14465.674642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C 0.217 3.783 4 H 0.034 0.966 5 C -0.551 4.551 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.672 5.672 14 C 0.052 3.948 15 C 0.514 3.486 16 O -0.500 6.500 17 N -0.680 5.680 18 C 0.184 3.816 19 C -0.103 4.103 20 C -0.057 4.057 21 C -0.001 4.001 22 C 0.046 3.954 23 C -0.117 4.117 24 O -0.287 6.287 25 C 0.570 3.430 26 F -0.154 7.154 27 F -0.119 7.119 28 O -0.287 6.287 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.025 0.975 32 H 0.033 0.967 33 H 0.091 0.909 34 H 0.263 0.737 35 H 0.339 0.661 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.415 0.585 39 H 0.161 0.839 40 H 0.148 0.852 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.806 16.073 -11.771 21.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.109 3.891 4 H 0.052 0.948 5 C -0.590 4.590 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.520 5.520 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.303 5.303 14 C -0.081 4.081 15 C 0.303 3.697 16 O -0.372 6.372 17 N -0.327 5.327 18 C 0.088 3.912 19 C -0.123 4.123 20 C -0.076 4.076 21 C -0.045 4.045 22 C 0.001 3.999 23 C -0.138 4.138 24 O -0.207 6.207 25 C 0.461 3.539 26 F -0.136 7.136 27 F -0.100 7.100 28 O -0.207 6.207 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.156 0.844 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.252 0.748 39 H 0.178 0.822 40 H 0.166 0.834 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.711 15.476 -12.219 21.980 hybrid contribution 2.291 1.008 0.189 2.510 sum -7.420 16.483 -12.030 21.713 Atomic orbital electron populations 1.21698 0.98886 0.98439 1.00428 1.21488 0.92193 0.98859 1.01870 1.19209 0.92840 0.91421 0.85588 0.94828 1.21843 0.92521 1.38646 1.06020 0.92769 1.24922 0.98085 0.94775 0.95595 1.69867 1.35045 1.37628 1.09502 0.86642 0.85857 0.77608 0.78166 1.20733 1.21082 1.19952 1.60663 1.56073 1.03228 1.10380 1.21685 1.00653 0.93001 0.92786 1.21610 0.76881 0.80301 0.90920 1.90697 1.48063 1.61129 1.37295 1.43830 1.61343 1.09021 1.18489 1.17311 0.92517 0.91633 0.89786 1.21157 0.94413 1.01740 0.95038 1.20023 1.00998 0.89620 0.96968 1.19525 0.99376 0.94903 0.90742 1.19078 0.98990 0.83955 0.97844 1.19655 1.01836 0.95686 0.96620 1.87685 1.77621 1.31180 1.24192 1.21949 0.76180 0.76999 0.78786 1.93279 1.64076 1.88921 1.67280 1.93240 1.84619 1.42843 1.89343 1.87628 1.40508 1.42680 1.49839 0.94512 0.93287 0.95580 0.94863 0.89053 0.92732 0.84390 0.91888 0.88407 0.74822 0.82200 0.83444 0.83503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.73 37.15 0.36 -2.35 16 2 C -0.11 -2.41 5.44 -26.74 -0.15 -2.56 16 3 C 0.22 4.94 1.99 -68.87 -0.14 4.80 16 4 H 0.03 0.83 7.69 -51.93 -0.40 0.43 16 5 C -0.55 -13.83 8.50 -34.44 -0.29 -14.12 16 6 H 0.05 1.35 7.72 -52.49 -0.41 0.95 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.62 11.30 55.43 0.63 -22.99 16 9 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.67 -13.04 5.29 -109.22 -0.58 -13.62 16 14 C 0.05 0.79 6.00 -4.98 -0.03 0.76 16 15 C 0.51 7.10 7.62 -10.99 -0.08 7.02 16 16 O -0.50 -8.48 14.01 5.54 0.08 -8.40 16 17 N -0.68 -6.82 5.35 -9.84 -0.05 -6.87 16 18 C 0.18 1.92 6.28 -83.65 -0.52 1.40 16 19 C -0.10 -1.12 8.65 -39.38 -0.34 -1.46 16 20 C -0.06 -0.56 10.05 -39.49 -0.40 -0.96 16 21 C 0.00 -0.01 7.15 -39.07 -0.28 -0.29 16 22 C 0.05 0.50 7.14 -39.10 -0.28 0.22 16 23 C -0.12 -1.11 9.97 -39.28 -0.39 -1.50 16 24 O -0.29 -3.23 11.37 -45.74 -0.52 -3.75 16 25 C 0.57 6.18 3.70 101.05 0.37 6.56 16 26 F -0.15 -1.70 17.58 2.25 0.04 -1.66 16 27 F -0.12 -1.20 17.56 2.25 0.04 -1.16 16 28 O -0.29 -3.26 11.35 -46.00 -0.52 -3.78 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.94 7.87 -51.93 -0.41 0.54 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.09 2.33 5.97 -51.93 -0.31 2.02 16 34 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.34 6.87 8.28 -39.29 -0.33 6.55 16 36 H 0.06 0.95 8.13 -51.92 -0.42 0.53 16 37 H 0.10 1.39 7.92 -51.93 -0.41 0.97 16 38 H 0.42 2.84 8.82 -40.82 -0.36 2.48 16 39 H 0.16 1.90 6.42 -52.49 -0.34 1.56 16 40 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 359.86 15.07 5.42 5.42 Total: -1.00 -28.50 359.86 -7.38 -35.88 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -4.63 Total: 6.66 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -2.26 Total: -0.80 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.00 Total: -43.48 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.96 Total: -15.94 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.08 Total: -2.82 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.50 -7.38 -35.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565173511.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.186 kcal (2) G-P(sol) polarization free energy of solvation -28.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds