Wall clock time and date at job start Wed Apr 1 2020 01:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47317 * 2 1 4 4 H 1.09004 * 109.47012 * 55.89936 * 3 2 1 5 5 C 1.50708 * 109.47134 * 175.88959 * 3 2 1 6 6 H 1.08000 * 119.99713 * 120.00222 * 5 3 2 7 7 C 1.37872 * 120.00346 * 300.00782 * 5 3 2 8 8 N 1.31519 * 120.00192 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00104 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47040 * 89.99795 * 9 7 5 11 11 H 1.48507 * 109.46872 * 209.99619 * 9 7 5 12 12 H 1.48495 * 109.47254 * 329.99690 * 9 7 5 13 13 N 1.46890 * 109.47630 * 295.89361 * 3 2 1 14 14 C 1.46897 * 111.00485 * 153.46072 * 13 3 2 15 15 C 1.50700 * 109.47763 * 185.33422 * 14 13 3 16 16 O 1.21297 * 119.99334 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00511 * 180.02562 * 15 14 13 18 18 C 1.40099 * 120.00166 * 184.94678 * 17 15 14 19 19 C 1.38843 * 120.00289 * 33.65660 * 18 17 15 20 20 C 1.38168 * 120.07092 * 180.02562 * 19 18 17 21 21 C 1.38562 * 120.11535 * 0.25260 * 20 19 18 22 22 C 1.39283 * 119.94213 * 359.45759 * 21 20 19 23 23 C 1.38491 * 119.89688 * 0.56222 * 22 21 20 24 24 O 1.36514 * 108.64270 * 180.32974 * 22 21 20 25 25 C 1.44340 * 105.37818 * 342.32252 * 24 22 21 26 26 F 1.39907 * 111.02372 * 268.95565 * 25 24 22 27 27 F 1.39899 * 110.41049 * 146.03193 * 25 24 22 28 28 O 1.36595 * 131.44235 * 179.72545 * 21 20 19 29 29 H 1.09005 * 109.46662 * 305.06839 * 1 2 3 30 30 H 1.09001 * 109.47427 * 65.06762 * 1 2 3 31 31 H 1.08998 * 109.47467 * 185.06735 * 1 2 3 32 32 H 1.09008 * 109.46616 * 240.00007 * 2 1 3 33 33 H 1.09003 * 109.47216 * 120.00897 * 2 1 3 34 34 H 0.96987 * 120.00441 * 180.02562 * 8 7 5 35 35 H 1.00906 * 111.00137 * 277.41833 * 13 3 2 36 36 H 1.09010 * 109.46935 * 65.33327 * 14 13 3 37 37 H 1.08998 * 109.47060 * 305.33792 * 14 13 3 38 38 H 0.97004 * 119.99868 * 4.93960 * 17 15 14 39 39 H 1.07995 * 119.96497 * 0.02562 * 19 18 17 40 40 H 1.07996 * 119.94521 * 179.97438 * 20 19 18 41 41 H 1.08003 * 120.01065 * 179.68641 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6179 1.9771 0.8510 5 6 3.5436 1.4436 0.1018 6 1 4.1374 1.8922 -0.6808 7 6 4.1611 0.8719 1.1940 8 7 3.4379 0.3259 2.1472 9 14 6.0248 0.8728 1.3198 10 1 6.4729 2.1020 2.0223 11 1 6.4701 -0.3224 2.0805 12 1 6.6130 0.8393 -0.0433 13 7 1.6331 2.1058 -1.2458 14 6 1.5215 3.5583 -1.0568 15 6 0.9780 4.1882 -2.3133 16 8 0.7094 3.4951 -3.2719 17 7 0.7903 5.5215 -2.3720 18 6 0.1890 6.0953 -3.4999 19 6 -0.7951 5.4011 -4.1909 20 6 -1.3886 5.9655 -5.3036 21 6 -1.0000 7.2232 -5.7363 22 6 -0.0174 7.9245 -5.0416 23 6 0.5773 7.3578 -3.9265 24 8 0.1783 9.1271 -5.6573 25 6 -0.3928 8.9799 -6.9747 26 9 0.5658 8.5324 -7.8902 27 9 -0.9518 10.1891 -7.4020 28 8 -1.4181 7.9862 -6.7893 29 1 -0.3633 0.5905 0.8412 30 1 -0.3634 0.4332 -0.9319 31 1 -0.3634 -1.0236 0.0908 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5140 0.8899 34 1 3.8723 -0.0759 2.9157 35 1 2.2702 1.8867 -1.9970 36 1 2.5058 3.9730 -0.8389 37 1 0.8477 3.7658 -0.2256 38 1 1.0713 6.0838 -1.6333 39 1 -1.0969 4.4190 -3.8582 40 1 -2.1535 5.4236 -5.8398 41 1 1.3430 7.8978 -3.3895 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565173511.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:08 Heat of formation + Delta-G solvation = -186.347551 kcal Electronic energy + Delta-G solvation = -28986.393520 eV Core-core repulsion = 24309.452348 eV Total energy + Delta-G solvation = -4676.941172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.122 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.66857 -49.13019 -43.39986 -41.38590 -38.92905 -38.16447 -37.66918 -35.51467 -34.34852 -32.90924 -31.83854 -30.42956 -28.85767 -26.83568 -26.30584 -24.78812 -24.41763 -23.86831 -21.84569 -21.41247 -20.48986 -20.22657 -19.92457 -18.90069 -18.77916 -18.18680 -17.54463 -16.96197 -16.73847 -16.41688 -16.29613 -16.00164 -15.83675 -15.76422 -15.38931 -15.35615 -15.25384 -15.09670 -14.89897 -14.84654 -14.45523 -14.28140 -14.12832 -13.75950 -13.52554 -13.21977 -13.05248 -13.01330 -12.70768 -12.57234 -12.48409 -12.06178 -11.56326 -11.45414 -11.28308 -11.04770 -10.81566 -10.42784 -10.07707 -9.18787 -9.04208 -8.03294 -6.24882 -0.29687 -0.08982 0.45264 0.95053 1.40692 1.44886 1.52226 1.53327 1.91622 2.37992 2.42983 2.68099 2.78291 3.05186 3.17706 3.55160 3.61516 3.77972 3.90447 3.93124 4.15400 4.38045 4.48686 4.67567 4.68453 4.70100 4.78090 4.81114 4.97790 5.03201 5.07289 5.20898 5.25646 5.46988 5.54468 5.65051 5.69463 5.79113 6.09324 6.19405 6.28807 6.42531 6.77691 6.99666 7.12464 7.46846 8.93284 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.021895 B = 0.002049 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.515638 B =13659.038957 C =14465.674642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.225 3.775 4 H 0.015 0.985 5 C -0.560 4.560 6 H 0.052 0.948 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.947 3.053 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.673 5.673 14 C 0.051 3.949 15 C 0.525 3.475 16 O -0.534 6.534 17 N -0.659 5.659 18 C 0.175 3.825 19 C -0.109 4.109 20 C -0.052 4.052 21 C -0.012 4.012 22 C 0.033 3.967 23 C -0.103 4.103 24 O -0.291 6.291 25 C 0.570 3.430 26 F -0.156 7.156 27 F -0.115 7.115 28 O -0.293 6.293 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.023 0.977 33 H 0.063 0.937 34 H 0.262 0.738 35 H 0.333 0.667 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.432 0.568 39 H 0.151 0.849 40 H 0.167 0.833 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.711 17.293 -12.067 22.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.143 4.143 3 C 0.117 3.883 4 H 0.033 0.967 5 C -0.599 4.599 6 H 0.070 0.930 7 C -0.177 4.177 8 N -0.547 5.547 9 Si 0.773 3.227 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.303 5.303 14 C -0.082 4.082 15 C 0.313 3.687 16 O -0.409 6.409 17 N -0.308 5.308 18 C 0.079 3.921 19 C -0.130 4.130 20 C -0.071 4.071 21 C -0.056 4.056 22 C -0.011 4.011 23 C -0.124 4.124 24 O -0.211 6.211 25 C 0.462 3.538 26 F -0.138 7.138 27 F -0.096 7.096 28 O -0.213 6.213 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.150 0.850 36 H 0.087 0.913 37 H 0.129 0.871 38 H 0.272 0.728 39 H 0.168 0.832 40 H 0.185 0.815 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -9.621 16.753 -12.508 23.015 hybrid contribution 2.223 0.683 0.246 2.339 sum -7.398 17.437 -12.262 22.564 Atomic orbital electron populations 1.21547 0.96434 0.99514 1.00655 1.21380 0.94374 0.98605 0.99932 1.18966 0.91567 0.91481 0.86323 0.96695 1.22156 0.93913 1.38090 1.05725 0.92996 1.25594 1.01750 0.94756 0.95555 1.69985 1.36378 1.38413 1.09923 0.85737 0.81467 0.77527 0.77933 1.20067 1.21302 1.19868 1.60534 1.55405 1.05805 1.08542 1.21721 1.01478 0.90732 0.94243 1.21146 0.76513 0.81270 0.89732 1.90696 1.49775 1.62278 1.38122 1.43464 1.60409 1.07862 1.19036 1.17355 0.92771 0.92070 0.89928 1.21154 0.94885 1.01451 0.95474 1.20179 1.01073 0.89299 0.96580 1.19733 0.99706 0.95319 0.90832 1.19287 0.99407 0.84022 0.98411 1.19802 1.01590 0.95070 0.95941 1.87671 1.77720 1.31385 1.24283 1.21938 0.76095 0.77062 0.78733 1.93273 1.64174 1.88982 1.67353 1.93248 1.84536 1.42550 1.89293 1.87613 1.40736 1.42869 1.50039 0.94461 0.92765 0.94068 0.95809 0.91858 0.92869 0.85036 0.91326 0.87140 0.72769 0.83191 0.81509 0.80934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 9.73 71.98 0.70 -4.10 16 2 C -0.10 -4.79 5.44 30.59 0.17 -4.62 16 3 C 0.22 10.26 1.99 44.17 0.09 10.35 16 4 H 0.02 0.74 7.69 -2.38 -0.02 0.73 16 5 C -0.56 -28.04 8.50 25.60 0.22 -27.83 16 6 H 0.05 2.57 7.72 -2.91 -0.02 2.55 16 7 C 0.02 1.24 5.29 84.65 0.45 1.68 16 8 N -0.91 -49.01 11.30 21.45 0.24 -48.77 16 9 Si 0.95 41.06 29.54 68.60 2.03 43.09 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 11 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 N -0.67 -25.77 5.29 -499.47 -2.64 -28.41 16 14 C 0.05 1.50 6.00 85.56 0.51 2.01 16 15 C 0.52 13.72 7.62 87.66 0.67 14.38 16 16 O -0.53 -17.65 14.01 -3.08 -0.04 -17.69 16 17 N -0.66 -11.79 5.35 -303.44 -1.62 -13.41 16 18 C 0.17 3.30 6.28 38.10 0.24 3.54 16 19 C -0.11 -2.23 8.65 22.40 0.19 -2.04 16 20 C -0.05 -0.96 10.05 22.33 0.22 -0.74 16 21 C -0.01 -0.25 7.15 22.60 0.16 -0.09 16 22 C 0.03 0.66 7.14 22.58 0.16 0.82 16 23 C -0.10 -1.72 9.97 22.47 0.22 -1.49 16 24 O -0.29 -6.12 11.37 -76.22 -0.87 -6.98 16 25 C 0.57 11.75 3.70 113.37 0.42 12.17 16 26 F -0.16 -3.29 17.58 44.97 0.79 -2.50 16 27 F -0.12 -2.19 17.56 44.97 0.79 -1.40 16 28 O -0.29 -6.33 11.35 -77.17 -0.88 -7.21 16 29 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.05 2.03 7.87 -2.39 -0.02 2.01 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.06 3.28 5.97 -2.39 -0.01 3.27 16 34 H 0.26 13.56 8.31 -92.72 -0.77 12.79 16 35 H 0.33 13.43 8.28 -89.69 -0.74 12.69 16 36 H 0.07 1.97 8.13 -2.38 -0.02 1.95 16 37 H 0.11 2.96 7.92 -2.39 -0.02 2.94 16 38 H 0.43 4.68 8.82 -92.71 -0.82 3.87 16 39 H 0.15 3.44 6.42 -2.91 -0.02 3.42 16 40 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 41 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -60.42 359.86 1.78 -58.64 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -0.45 Total: 20.58 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 4.43 Total: 4.05 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -4.02 Total: -90.59 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -1.79 Total: -31.88 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 1.58 Total: -3.90 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -60.42 1.78 -58.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565173511.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.706 kcal (2) G-P(sol) polarization free energy of solvation -60.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds