Wall clock time and date at job start Wed Apr 1 2020 00:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 119.99771 * 2 1 4 4 H 1.48500 * 109.47078 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47346 * 300.00228 * 3 2 1 6 6 H 1.48498 * 109.47223 * 60.00399 * 3 2 1 7 7 C 1.37875 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00049 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00219 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.63923 * 56.86084 * 9 7 2 11 11 C 1.55160 * 110.72080 * 180.02562 * 9 7 2 12 12 C 1.54906 * 101.57998 * 154.04481 * 11 9 7 13 13 N 1.47426 * 104.83354 * 322.98808 * 12 11 9 14 14 C 1.34775 * 125.64860 * 204.09307 * 13 12 11 15 15 O 1.21523 * 119.99820 * 180.02562 * 14 13 12 16 16 C 1.48147 * 120.00220 * 0.02562 * 14 13 12 17 17 C 1.39167 * 119.69287 * 180.27391 * 16 14 13 18 18 C 1.38742 * 119.18738 * 180.21340 * 17 16 14 19 19 C 1.38373 * 118.55745 * 359.52294 * 18 17 16 20 20 C 1.39244 * 119.30817 * 0.25543 * 19 18 17 21 21 O 1.35669 * 119.61731 * 180.02562 * 20 19 18 22 22 C 1.42895 * 116.99761 * 180.02562 * 21 20 19 23 23 C 1.53009 * 109.46956 * 180.02562 * 22 21 20 24 24 F 1.39898 * 109.46685 * 299.99501 * 23 22 21 25 25 F 1.39901 * 109.46881 * 59.99767 * 23 22 21 26 26 N 1.31927 * 120.76682 * 359.97398 * 20 19 18 27 27 C 1.47022 * 108.70295 * 24.35863 * 13 12 11 28 28 H 0.96999 * 119.99653 * 359.97438 * 1 2 3 29 29 H 0.96703 * 114.00017 * 303.13800 * 10 9 7 30 30 H 1.09000 * 111.00047 * 35.97188 * 11 9 7 31 31 H 1.09000 * 111.00121 * 272.11762 * 11 9 7 32 32 H 1.08998 * 110.36989 * 204.15267 * 12 11 9 33 33 H 1.09003 * 110.46392 * 81.87544 * 12 11 9 34 34 H 1.08002 * 120.40637 * 0.02562 * 17 16 14 35 35 H 1.08002 * 120.72419 * 179.80480 * 18 17 16 36 36 H 1.08005 * 120.34590 * 180.23247 * 19 18 17 37 37 H 1.09002 * 109.47427 * 299.99319 * 22 21 20 38 38 H 1.08998 * 109.47373 * 60.00053 * 22 21 20 39 39 H 1.08996 * 109.46848 * 179.97438 * 23 22 21 40 40 H 1.08999 * 109.88234 * 118.12961 * 27 13 12 41 41 H 1.08992 * 109.88144 * 239.29328 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 0.3657 -2.5696 -1.1200 11 6 2.2335 -3.7002 -0.0005 12 6 1.3742 -4.8048 0.6636 13 7 0.5907 -4.1033 1.6968 14 6 0.0657 -4.6674 2.8025 15 8 -0.5657 -3.9896 3.5891 16 6 0.2583 -6.1137 3.0590 17 6 -0.2915 -6.6907 4.1999 18 6 -0.1009 -8.0452 4.4320 19 6 0.6247 -8.7787 3.5099 20 6 1.1433 -8.1396 2.3868 21 8 1.8553 -8.8528 1.4784 22 6 2.3618 -8.1409 0.3477 23 6 3.1311 -9.1042 -0.5586 24 9 4.1960 -9.6652 0.1545 25 9 2.2737 -10.1207 -0.9932 26 7 0.9495 -6.8488 2.1952 27 6 0.4714 -2.6877 1.3180 28 1 -0.4849 0.8401 0.0004 29 1 -0.2690 -1.8415 -1.1659 30 1 3.1183 -3.4811 0.5972 31 1 2.5099 -3.9787 -1.0174 32 1 2.0139 -5.5599 1.1203 33 1 0.7106 -5.2637 -0.0693 34 1 -0.8570 -6.0908 4.8976 35 1 -0.5138 -8.5179 5.3109 36 1 0.7875 -9.8358 3.6600 37 1 1.5321 -7.7042 -0.2083 38 1 3.0294 -7.3486 0.6863 39 1 3.5171 -8.5613 -1.4214 40 1 -0.5775 -2.4305 1.1707 41 1 0.9039 -2.0582 2.0955 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:56 Heat of formation + Delta-G solvation = -172.162012 kcal Electronic energy + Delta-G solvation = -30496.520711 eV Core-core repulsion = 25820.194670 eV Total energy + Delta-G solvation = -4676.326041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.122 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.18681 -47.21424 -41.01755 -39.34119 -38.10673 -37.09309 -34.44826 -32.79208 -32.20529 -31.57736 -30.21572 -29.64810 -27.90024 -25.83378 -24.60673 -23.66006 -22.64151 -22.40774 -20.18400 -19.54137 -18.57135 -17.78038 -17.49725 -17.21442 -17.20038 -16.65577 -16.18708 -16.15897 -15.64870 -15.29401 -15.07571 -14.82563 -14.34678 -14.11040 -13.87016 -13.71074 -13.57869 -13.50672 -13.02594 -12.99036 -12.85000 -12.62511 -12.36367 -12.03947 -11.73768 -11.57576 -11.41288 -11.34349 -11.11851 -10.87213 -10.68310 -10.51933 -10.31901 -10.18678 -10.03780 -9.43170 -9.25146 -8.77719 -8.70085 -8.36555 -7.93131 -6.33920 -4.42618 0.58483 1.06788 2.46757 2.93534 3.16703 3.26143 3.29210 3.35566 3.47136 3.84986 3.87090 3.97142 4.19993 4.23371 4.50504 4.71256 4.79156 4.83699 4.94079 5.00854 5.10318 5.18167 5.28432 5.46978 5.70457 5.79965 5.88043 5.93711 6.08652 6.09633 6.24627 6.48424 6.70062 6.80067 6.82758 6.94288 7.20142 7.30381 7.49183 7.69156 7.94491 8.09061 8.53616 8.62085 9.26666 9.39028 10.73894 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.012382 B = 0.003466 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.813924 B = 8075.388439 C = 9765.145920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.249 3.751 10 O -0.586 6.586 11 C -0.124 4.124 12 C 0.105 3.895 13 N -0.585 5.585 14 C 0.567 3.433 15 O -0.542 6.542 16 C 0.136 3.864 17 C -0.149 4.149 18 C -0.046 4.046 19 C -0.170 4.170 20 C 0.315 3.685 21 O -0.295 6.295 22 C 0.013 3.987 23 C 0.271 3.729 24 F -0.200 7.200 25 F -0.200 7.200 26 N -0.510 5.510 27 C 0.099 3.901 28 H 0.271 0.729 29 H 0.386 0.614 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.135 0.865 40 H 0.067 0.933 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.291 -17.650 2.832 18.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.209 3.791 10 O -0.396 6.396 11 C -0.162 4.162 12 C -0.018 4.018 13 N -0.315 5.315 14 C 0.352 3.648 15 O -0.420 6.420 16 C -0.001 4.001 17 C -0.170 4.170 18 C -0.072 4.072 19 C -0.191 4.191 20 C 0.135 3.865 21 O -0.202 6.202 22 C -0.063 4.063 23 C 0.217 3.783 24 F -0.181 7.181 25 F -0.181 7.181 26 N -0.236 5.236 27 C -0.023 4.023 28 H 0.081 0.919 29 H 0.238 0.762 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.170 0.830 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.152 0.848 40 H 0.085 0.915 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.533 -17.608 2.417 18.121 hybrid contribution -0.267 1.121 0.744 1.372 sum 3.267 -16.487 3.161 17.102 Atomic orbital electron populations 1.69583 1.06041 1.27941 1.49974 1.25081 0.95048 0.99835 0.93296 0.86336 0.80051 0.82652 0.77806 1.19569 1.20697 1.20735 1.21570 0.93770 0.90087 1.52112 0.91403 1.19483 0.85846 0.92224 0.81593 1.86072 1.51395 1.53442 1.48729 1.22854 0.97806 0.95295 1.00245 1.22657 0.94116 0.95342 0.89700 1.48622 1.50199 1.12316 1.20373 1.17481 0.80636 0.85047 0.81597 1.90775 1.42144 1.62452 1.46628 1.21025 0.93881 0.94089 0.91130 1.22016 1.01174 0.95559 0.98298 1.21435 0.94519 0.93146 0.98086 1.21227 1.02000 1.02069 0.93762 1.19781 0.90614 0.87550 0.88572 1.86271 1.66026 1.35769 1.32143 1.24007 1.00525 0.94826 0.86976 1.22157 0.78916 0.84026 0.93167 1.93017 1.57327 1.87197 1.80567 1.93019 1.71181 1.63455 1.90434 1.67562 1.18648 1.05518 1.31893 1.23169 1.01899 0.77343 0.99853 0.91910 0.76176 0.90672 0.90561 0.89550 0.92078 0.83047 0.83308 0.83694 0.87957 0.88041 0.84762 0.91469 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.39 10.97 55.43 0.61 -22.78 16 2 C 0.07 1.80 5.28 -17.82 -0.09 1.70 16 3 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.54 -13.70 8.12 -34.44 -0.28 -13.98 16 8 H 0.07 1.70 7.76 -52.49 -0.41 1.30 16 9 C 0.25 5.87 0.86 -89.93 -0.08 5.79 16 10 O -0.59 -14.47 13.07 -35.23 -0.46 -14.93 16 11 C -0.12 -2.38 6.23 -24.58 -0.15 -2.53 16 12 C 0.10 1.83 5.93 -2.53 -0.01 1.82 16 13 N -0.58 -12.01 3.33 -171.51 -0.57 -12.58 16 14 C 0.57 11.27 7.84 -12.19 -0.10 11.18 16 15 O -0.54 -12.20 16.64 5.35 0.09 -12.11 16 16 C 0.14 2.15 6.72 -83.02 -0.56 1.60 16 17 C -0.15 -1.91 9.63 -39.05 -0.38 -2.29 16 18 C -0.05 -0.44 10.16 -39.35 -0.40 -0.84 16 19 C -0.17 -1.74 10.05 -39.16 -0.39 -2.13 16 20 C 0.32 3.97 7.49 -17.14 -0.13 3.84 16 21 O -0.29 -3.52 10.00 -18.71 -0.19 -3.71 16 22 C 0.01 0.13 5.18 37.16 0.19 0.32 16 23 C 0.27 2.26 5.63 37.16 0.21 2.47 16 24 F -0.20 -2.09 17.28 2.25 0.04 -2.05 16 25 F -0.20 -2.11 17.28 2.25 0.04 -2.08 16 26 N -0.51 -7.35 5.49 -9.88 -0.05 -7.41 16 27 C 0.10 2.34 5.54 -3.06 -0.02 2.32 16 28 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.39 9.88 6.98 45.56 0.32 10.20 16 30 H 0.07 1.39 8.03 -51.93 -0.42 0.97 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.09 1.32 4.51 -51.93 -0.23 1.08 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.15 1.87 7.63 -52.49 -0.40 1.47 16 35 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 38 H 0.10 0.93 7.15 -51.93 -0.37 0.56 16 39 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 1.74 8.07 -51.93 -0.42 1.32 16 41 H 0.07 1.76 7.82 -51.93 -0.41 1.36 16 LS Contribution 354.48 15.07 5.34 5.34 Total: -1.00 -30.72 354.48 -6.37 -37.09 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -4.01 Total: 10.90 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: -2.19 Total: 9.27 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: -0.02 Total: -42.76 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.56 Total: -30.75 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.08 Total: -4.13 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.72 -6.37 -37.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.075 kcal (2) G-P(sol) polarization free energy of solvation -30.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds