Wall clock time and date at job start Wed Apr 1 2020 00:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 119.99771 * 2 1 4 4 H 1.48500 * 109.47078 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47346 * 300.00228 * 3 2 1 6 6 H 1.48498 * 109.47223 * 60.00399 * 3 2 1 7 7 C 1.37875 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00049 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00219 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.63923 * 56.86084 * 9 7 2 11 11 C 1.55160 * 110.72080 * 180.02562 * 9 7 2 12 12 C 1.54906 * 101.57998 * 154.04481 * 11 9 7 13 13 N 1.47426 * 104.83354 * 322.98808 * 12 11 9 14 14 C 1.34775 * 125.64860 * 204.09307 * 13 12 11 15 15 O 1.21523 * 119.99820 * 180.02562 * 14 13 12 16 16 C 1.48147 * 120.00220 * 0.02562 * 14 13 12 17 17 C 1.39167 * 119.69287 * 180.27391 * 16 14 13 18 18 C 1.38742 * 119.18738 * 180.21340 * 17 16 14 19 19 C 1.38373 * 118.55745 * 359.52294 * 18 17 16 20 20 C 1.39244 * 119.30817 * 0.25543 * 19 18 17 21 21 O 1.35669 * 119.61731 * 180.02562 * 20 19 18 22 22 C 1.42895 * 116.99761 * 180.02562 * 21 20 19 23 23 C 1.53009 * 109.46956 * 180.02562 * 22 21 20 24 24 F 1.39898 * 109.46685 * 299.99501 * 23 22 21 25 25 F 1.39901 * 109.46881 * 59.99767 * 23 22 21 26 26 N 1.31927 * 120.76682 * 359.97398 * 20 19 18 27 27 C 1.47022 * 108.70295 * 24.35863 * 13 12 11 28 28 H 0.96999 * 119.99653 * 359.97438 * 1 2 3 29 29 H 0.96703 * 114.00017 * 303.13800 * 10 9 7 30 30 H 1.09000 * 111.00047 * 35.97188 * 11 9 7 31 31 H 1.09000 * 111.00121 * 272.11762 * 11 9 7 32 32 H 1.08998 * 110.36989 * 204.15267 * 12 11 9 33 33 H 1.09003 * 110.46392 * 81.87544 * 12 11 9 34 34 H 1.08002 * 120.40637 * 0.02562 * 17 16 14 35 35 H 1.08002 * 120.72419 * 179.80480 * 18 17 16 36 36 H 1.08005 * 120.34590 * 180.23247 * 19 18 17 37 37 H 1.09002 * 109.47427 * 299.99319 * 22 21 20 38 38 H 1.08998 * 109.47373 * 60.00053 * 22 21 20 39 39 H 1.08996 * 109.46848 * 179.97438 * 23 22 21 40 40 H 1.08999 * 109.88234 * 118.12961 * 27 13 12 41 41 H 1.08992 * 109.88144 * 239.29328 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 0.3657 -2.5696 -1.1200 11 6 2.2335 -3.7002 -0.0005 12 6 1.3742 -4.8048 0.6636 13 7 0.5907 -4.1033 1.6968 14 6 0.0657 -4.6674 2.8025 15 8 -0.5657 -3.9896 3.5891 16 6 0.2583 -6.1137 3.0590 17 6 -0.2915 -6.6907 4.1999 18 6 -0.1009 -8.0452 4.4320 19 6 0.6247 -8.7787 3.5099 20 6 1.1433 -8.1396 2.3868 21 8 1.8553 -8.8528 1.4784 22 6 2.3618 -8.1409 0.3477 23 6 3.1311 -9.1042 -0.5586 24 9 4.1960 -9.6652 0.1545 25 9 2.2737 -10.1207 -0.9932 26 7 0.9495 -6.8488 2.1952 27 6 0.4714 -2.6877 1.3180 28 1 -0.4849 0.8401 0.0004 29 1 -0.2690 -1.8415 -1.1659 30 1 3.1183 -3.4811 0.5972 31 1 2.5099 -3.9787 -1.0174 32 1 2.0139 -5.5599 1.1203 33 1 0.7106 -5.2637 -0.0693 34 1 -0.8570 -6.0908 4.8976 35 1 -0.5138 -8.5179 5.3109 36 1 0.7875 -9.8358 3.6600 37 1 1.5321 -7.7042 -0.2083 38 1 3.0294 -7.3486 0.6863 39 1 3.5171 -8.5613 -1.4214 40 1 -0.5775 -2.4305 1.1707 41 1 0.9039 -2.0582 2.0955 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:55 Heat of formation + Delta-G solvation = -194.358284 kcal Electronic energy + Delta-G solvation = -30497.483214 eV Core-core repulsion = 25820.194670 eV Total energy + Delta-G solvation = -4677.288544 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.122 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.90102 -47.94438 -42.07837 -40.76425 -39.32968 -38.56808 -36.20580 -34.18475 -33.79996 -32.47279 -31.77492 -30.58887 -29.64599 -27.48354 -25.84226 -24.68797 -23.87099 -23.44163 -21.59567 -21.19080 -19.52051 -19.17153 -18.71783 -18.50880 -18.00257 -17.60396 -17.36217 -17.08946 -17.05089 -16.62590 -16.53156 -16.39408 -15.98682 -15.07244 -14.85113 -14.82753 -14.78913 -14.64640 -14.43204 -14.31456 -14.17403 -13.83116 -13.50295 -13.42793 -13.27035 -13.10060 -12.89177 -12.53648 -12.38611 -12.30221 -12.26072 -12.09379 -12.01385 -11.64360 -11.20247 -11.04231 -10.73206 -10.46423 -10.30535 -9.85385 -9.51006 -8.28742 -6.44735 -0.46079 0.18101 1.39760 1.43397 1.53914 1.62701 1.67744 1.90229 2.36801 2.71739 2.78799 2.83922 2.97982 3.30673 3.50964 3.59984 3.81618 3.83371 3.94823 4.01805 4.09988 4.20410 4.21623 4.35366 4.40276 4.44846 4.47066 4.64283 4.80870 4.89778 4.97328 5.07215 5.11708 5.25802 5.27523 5.34942 5.46851 5.73618 5.95458 6.02557 6.42863 6.54295 6.64366 6.99466 7.27548 7.36688 8.77780 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.012382 B = 0.003466 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.813924 B = 8075.388439 C = 9765.145920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.026 3.974 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.284 1.284 7 C -0.556 4.556 8 H 0.069 0.931 9 C 0.235 3.765 10 O -0.589 6.589 11 C -0.117 4.117 12 C 0.117 3.883 13 N -0.595 5.595 14 C 0.561 3.439 15 O -0.581 6.581 16 C 0.105 3.895 17 C -0.146 4.146 18 C -0.028 4.028 19 C -0.153 4.153 20 C 0.303 3.697 21 O -0.302 6.302 22 C 0.005 3.995 23 C 0.271 3.729 24 F -0.213 7.213 25 F -0.214 7.214 26 N -0.522 5.522 27 C 0.115 3.885 28 H 0.271 0.729 29 H 0.378 0.622 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.063 0.937 34 H 0.150 0.850 35 H 0.196 0.804 36 H 0.178 0.822 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.180 0.820 40 H 0.032 0.968 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.541 -20.112 3.185 20.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.175 4.175 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.210 1.210 7 C -0.594 4.594 8 H 0.087 0.913 9 C 0.194 3.806 10 O -0.398 6.398 11 C -0.155 4.155 12 C -0.005 4.005 13 N -0.325 5.325 14 C 0.350 3.650 15 O -0.462 6.462 16 C -0.031 4.031 17 C -0.168 4.168 18 C -0.053 4.053 19 C -0.173 4.173 20 C 0.122 3.878 21 O -0.209 6.209 22 C -0.071 4.071 23 C 0.218 3.782 24 F -0.194 7.194 25 F -0.195 7.195 26 N -0.249 5.249 27 C -0.008 4.008 28 H 0.081 0.919 29 H 0.229 0.771 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.132 0.868 33 H 0.081 0.919 34 H 0.168 0.832 35 H 0.213 0.787 36 H 0.195 0.805 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.196 0.804 40 H 0.051 0.949 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.803 -20.103 2.757 20.852 hybrid contribution -0.682 1.772 0.683 2.018 sum 4.122 -18.331 3.440 19.100 Atomic orbital electron populations 1.69686 1.07167 1.28538 1.50416 1.25820 0.95782 1.02848 0.93003 0.85404 0.79158 0.78911 0.77560 1.18817 1.20245 1.21014 1.21892 0.94048 0.91273 1.52232 0.91267 1.19700 0.86318 0.93684 0.80881 1.86061 1.51424 1.53029 1.49293 1.22862 0.97150 0.93698 1.01756 1.22718 0.93836 0.94942 0.89000 1.48692 1.51127 1.11131 1.21518 1.18216 0.79319 0.86972 0.80514 1.90728 1.43663 1.64078 1.47730 1.20419 0.97426 0.91808 0.93404 1.22170 1.00417 0.97217 0.97023 1.21897 0.93073 0.91282 0.99032 1.21722 0.99800 1.03551 0.92225 1.20118 0.91060 0.87013 0.89592 1.86284 1.65997 1.36030 1.32620 1.24215 1.00778 0.95472 0.86622 1.22602 0.78176 0.83430 0.94017 1.92989 1.57863 1.87449 1.81104 1.92989 1.71763 1.64229 1.90527 1.67257 1.18999 1.06652 1.31997 1.22684 0.99428 0.79306 0.99339 0.91919 0.77093 0.89981 0.88680 0.86842 0.91864 0.83191 0.78707 0.80471 0.87890 0.87550 0.80364 0.94905 0.94354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.60 10.97 21.45 0.24 -49.36 16 2 C 0.03 1.35 5.28 84.65 0.45 1.80 16 3 Si 0.96 41.59 29.54 68.60 2.03 43.61 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.56 -28.86 8.12 25.60 0.21 -28.65 16 8 H 0.07 3.48 7.76 -2.91 -0.02 3.46 16 9 C 0.23 11.31 0.86 -10.35 -0.01 11.30 16 10 O -0.59 -29.81 13.07 -148.98 -1.95 -31.75 16 11 C -0.12 -4.40 6.23 31.99 0.20 -4.20 16 12 C 0.12 4.02 5.93 86.85 0.51 4.54 16 13 N -0.59 -25.19 3.33 -814.83 -2.71 -27.90 16 14 C 0.56 23.08 7.84 86.88 0.68 23.76 16 15 O -0.58 -27.52 16.64 -3.79 -0.06 -27.58 16 16 C 0.10 3.27 6.72 41.85 0.28 3.55 16 17 C -0.15 -3.51 9.63 22.61 0.22 -3.29 16 18 C -0.03 -0.42 10.16 22.42 0.23 -0.19 16 19 C -0.15 -2.48 10.05 22.54 0.23 -2.26 16 20 C 0.30 6.84 7.49 84.92 0.64 7.48 16 21 O -0.30 -6.46 10.00 -89.85 -0.90 -7.36 16 22 C 0.01 0.09 5.18 71.99 0.37 0.46 16 23 C 0.27 3.83 5.63 71.99 0.41 4.24 16 24 F -0.21 -4.00 17.28 44.97 0.78 -3.22 16 25 F -0.21 -4.10 17.28 44.97 0.78 -3.33 16 26 N -0.52 -14.30 5.49 -298.19 -1.64 -15.94 16 27 C 0.12 5.78 5.54 86.73 0.48 6.26 16 28 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 29 H 0.38 20.18 6.98 -74.06 -0.52 19.66 16 30 H 0.08 2.96 8.03 -2.39 -0.02 2.94 16 31 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 32 H 0.11 3.31 4.51 -2.39 -0.01 3.30 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.15 3.59 7.63 -2.91 -0.02 3.57 16 35 H 0.20 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.10 1.77 8.10 -2.39 -0.02 1.75 16 38 H 0.11 1.71 7.15 -2.39 -0.02 1.70 16 39 H 0.18 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.03 1.82 8.07 -2.39 -0.02 1.80 16 41 H 0.04 2.09 7.82 -2.39 -0.02 2.07 16 Total: -1.00 -70.31 354.48 2.03 -68.28 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: 0.58 Total: 29.76 kcal Atomic # 6 Polarization: 19.90 SS G_CDS: 4.89 Total: 24.79 kcal Atomic # 7 Polarization: -89.09 SS G_CDS: -4.11 Total: -93.20 kcal Atomic # 8 Polarization: -63.78 SS G_CDS: -2.91 Total: -66.69 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 1.55 Total: -6.55 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -70.31 2.03 -68.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.079 kcal (2) G-P(sol) polarization free energy of solvation -70.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds