Wall clock time and date at job start Wed Apr 1 2020 00:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00275 * 2 1 4 4 H 1.48498 * 109.47457 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46734 * 299.99878 * 3 2 1 6 6 H 1.48498 * 109.47085 * 59.99594 * 3 2 1 7 7 C 1.37881 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00117 * 0.27310 * 7 2 1 10 10 O 1.42902 * 110.88374 * 59.02366 * 9 7 2 11 11 C 1.55159 * 111.00737 * 182.90384 * 9 7 2 12 12 C 1.54320 * 102.94310 * 153.57823 * 11 9 7 13 13 N 1.47029 * 107.27084 * 337.81098 * 12 11 9 14 14 C 1.34776 * 125.64622 * 178.97750 * 13 12 11 15 15 O 1.21578 * 119.99945 * 175.04994 * 14 13 12 16 16 C 1.47619 * 119.99964 * 355.05233 * 14 13 12 17 17 C 1.40277 * 120.50029 * 7.45571 * 16 14 13 18 18 C 1.37959 * 118.35777 * 179.73285 * 17 16 14 19 19 C 1.39172 * 119.25993 * 0.54025 * 18 17 16 20 20 O 1.35499 * 119.52138 * 179.74092 * 19 18 17 21 21 C 1.42900 * 116.99635 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.46831 * 180.02562 * 21 20 19 23 23 F 1.39900 * 109.47004 * 299.99801 * 22 21 20 24 24 F 1.39894 * 109.47324 * 60.00173 * 22 21 20 25 25 N 1.32401 * 120.94891 * 359.71892 * 19 18 17 26 26 C 1.31666 * 121.80135 * 0.02562 * 25 19 18 27 27 C 1.47469 * 108.72110 * 358.97143 * 13 12 11 28 28 H 0.97004 * 120.00175 * 359.97438 * 1 2 3 29 29 H 0.96701 * 114.00207 * 300.69920 * 10 9 7 30 30 H 1.08998 * 110.72048 * 271.94576 * 11 9 7 31 31 H 1.08997 * 110.71516 * 35.03470 * 11 9 7 32 32 H 1.09005 * 109.88016 * 97.22506 * 12 11 9 33 33 H 1.08994 * 109.88456 * 218.39070 * 12 11 9 34 34 H 1.08008 * 120.81995 * 359.97438 * 17 16 14 35 35 H 1.08000 * 120.36918 * 180.25729 * 18 17 16 36 36 H 1.09003 * 109.47068 * 300.00085 * 21 20 19 37 37 H 1.08997 * 109.47004 * 60.00203 * 21 20 19 38 38 H 1.08999 * 109.46645 * 180.02562 * 22 21 20 39 39 H 1.08000 * 119.68403 * 180.02562 * 26 25 19 40 40 H 1.08994 * 110.34677 * 265.25299 * 27 13 12 41 41 H 1.08998 * 110.39808 * 142.91762 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 -0.0051 10 8 0.4060 -2.5945 -1.1535 11 6 2.2254 -3.7043 0.0700 12 6 1.3642 -4.8049 0.7246 13 7 0.2766 -4.1336 1.4514 14 6 -0.7037 -4.7491 2.1418 15 8 -1.5021 -4.0916 2.7809 16 6 -0.8080 -6.2214 2.1221 17 6 0.1931 -6.9981 1.5200 18 6 0.0536 -8.3705 1.5318 19 6 -1.0716 -8.9349 2.1254 20 8 -1.2165 -10.2820 2.1353 21 6 -2.3915 -10.8035 2.7594 22 6 -2.3794 -12.3310 2.6736 23 9 -2.3518 -12.7224 1.3307 24 9 -1.2456 -12.8259 3.3269 25 7 -2.0021 -8.1743 2.6809 26 6 -1.9067 -6.8612 2.6966 27 6 0.4358 -2.6753 1.3003 28 1 -0.4850 0.8401 0.0004 29 1 -0.2527 -1.8894 -1.2168 30 1 2.5434 -4.0059 -0.9280 31 1 3.0879 -3.4647 0.6919 32 1 0.9492 -5.4570 -0.0440 33 1 1.9706 -5.3862 1.4190 34 1 1.0537 -6.5332 1.0620 35 1 0.8069 -8.9998 1.0813 36 1 -2.4127 -10.4988 3.8058 37 1 -3.2748 -10.4176 2.2506 38 1 -3.2758 -12.7287 3.1492 39 1 -2.6859 -6.2739 3.1597 40 1 0.9836 -2.2640 2.1481 41 1 -0.5379 -2.1945 1.2073 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847963.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:40 Heat of formation + Delta-G solvation = -160.689304 kcal Electronic energy + Delta-G solvation = -29413.139858 eV Core-core repulsion = 24737.311311 eV Total energy + Delta-G solvation = -4675.828547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.122 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.33765 -47.36694 -41.02423 -39.59797 -38.06014 -37.12409 -34.62794 -32.74794 -32.25123 -31.70297 -30.34941 -29.74408 -28.08552 -25.57364 -24.72432 -23.89854 -23.03189 -22.19918 -19.96380 -19.55499 -19.09615 -17.92228 -17.65969 -17.42161 -17.23351 -16.80922 -16.22347 -16.19402 -15.37953 -15.26979 -15.06832 -14.64135 -14.36212 -14.26466 -13.99128 -13.74811 -13.70029 -13.61917 -13.24061 -13.09171 -12.98672 -12.72718 -12.68184 -12.04094 -11.66466 -11.58632 -11.50532 -11.36807 -11.10368 -10.83049 -10.70685 -10.51923 -10.27579 -10.09315 -10.05955 -9.45137 -9.43568 -8.76683 -8.73941 -8.45537 -7.91221 -6.34692 -4.44294 0.67945 1.03870 2.37014 3.04198 3.15960 3.25420 3.28248 3.30668 3.47073 3.69006 3.83870 3.99421 4.03691 4.21609 4.38417 4.63586 4.77425 4.84819 4.88944 4.92237 4.93931 5.00791 5.21849 5.43134 5.48346 5.63136 5.70582 5.84578 5.93993 6.06074 6.12968 6.37500 6.61560 6.74804 6.79442 6.86900 7.16235 7.25722 7.54153 7.68028 7.92852 8.06101 8.55739 8.60906 9.24576 9.34090 10.72683 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.033459 B = 0.002117 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.638127 B =13225.095757 C =13576.914062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.121 4.121 12 C 0.091 3.909 13 N -0.600 5.600 14 C 0.571 3.429 15 O -0.547 6.547 16 C -0.207 4.207 17 C -0.045 4.045 18 C -0.191 4.191 19 C 0.330 3.670 20 O -0.294 6.294 21 C 0.017 3.983 22 C 0.271 3.729 23 F -0.199 7.199 24 F -0.199 7.199 25 N -0.547 5.547 26 C 0.198 3.802 27 C 0.094 3.906 28 H 0.271 0.729 29 H 0.385 0.615 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.181 0.819 35 H 0.148 0.852 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.133 0.867 39 H 0.174 0.826 40 H 0.064 0.936 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.870 -20.341 4.717 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.393 6.393 11 C -0.158 4.158 12 C -0.032 4.032 13 N -0.332 5.332 14 C 0.359 3.641 15 O -0.426 6.426 16 C -0.212 4.212 17 C -0.069 4.069 18 C -0.212 4.212 19 C 0.152 3.848 20 O -0.201 6.201 21 C -0.059 4.059 22 C 0.217 3.783 23 F -0.180 7.180 24 F -0.180 7.180 25 N -0.270 5.270 26 C 0.040 3.960 27 C -0.027 4.027 28 H 0.081 0.919 29 H 0.236 0.764 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.197 0.803 35 H 0.165 0.835 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.150 0.850 39 H 0.191 0.809 40 H 0.082 0.918 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.654 -21.080 5.234 22.025 hybrid contribution 0.605 1.696 -0.147 1.806 sum -3.050 -19.384 5.087 20.271 Atomic orbital electron populations 1.69648 1.06024 1.27956 1.49590 1.25087 0.95051 0.99856 0.93263 0.86333 0.80033 0.82651 0.77803 1.19559 1.20728 1.20753 1.21502 0.93727 0.89959 1.52429 0.91364 1.19618 0.86159 0.91743 0.81670 1.86082 1.51489 1.55167 1.46543 1.22697 0.97791 0.94867 1.00478 1.22486 0.89105 0.96624 0.94966 1.48641 1.25511 1.10002 1.49047 1.17495 0.80906 0.85990 0.79711 1.90763 1.42212 1.66432 1.43241 1.20957 0.98717 0.95260 1.06275 1.23171 0.99049 0.92630 0.92100 1.21062 0.98754 0.95311 1.06027 1.20027 0.90612 0.83264 0.90926 1.86248 1.42286 1.17332 1.74215 1.23850 0.89377 0.91335 1.01383 1.22136 0.88281 0.91469 0.76413 1.93029 1.97083 1.92224 1.35657 1.93025 1.55073 1.89141 1.80788 1.67360 1.29449 1.07732 1.22467 1.22608 0.95096 0.87764 0.90500 1.23369 1.02938 0.75950 1.00407 0.91923 0.76441 0.90389 0.90106 0.91111 0.91660 0.80279 0.83470 0.88283 0.88244 0.85020 0.80856 0.91800 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.11 10.69 55.43 0.59 -22.52 16 2 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 3 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -13.39 8.25 -34.44 -0.28 -13.67 16 8 H 0.07 1.66 7.78 -52.48 -0.41 1.26 16 9 C 0.25 5.69 0.88 -89.62 -0.08 5.61 16 10 O -0.58 -14.24 13.17 -35.23 -0.46 -14.71 16 11 C -0.12 -2.18 6.13 -24.90 -0.15 -2.34 16 12 C 0.09 1.43 4.87 -3.06 -0.01 1.42 16 13 N -0.60 -11.65 3.33 -172.65 -0.57 -12.23 16 14 C 0.57 10.99 7.81 -12.43 -0.10 10.89 16 15 O -0.55 -12.24 16.69 5.30 0.09 -12.15 16 16 C -0.21 -3.17 5.89 -104.82 -0.62 -3.79 16 17 C -0.05 -0.57 8.67 -38.92 -0.34 -0.91 16 18 C -0.19 -2.23 10.02 -39.34 -0.39 -2.62 16 19 C 0.33 4.14 7.49 -16.96 -0.13 4.01 16 20 O -0.29 -3.37 9.99 -18.19 -0.18 -3.55 16 21 C 0.02 0.14 5.52 37.16 0.21 0.34 16 22 C 0.27 1.79 5.63 37.16 0.21 2.00 16 23 F -0.20 -1.85 17.28 2.25 0.04 -1.82 16 24 F -0.20 -1.83 17.28 2.25 0.04 -1.80 16 25 N -0.55 -7.15 9.18 -12.96 -0.12 -7.27 16 26 C 0.20 2.80 10.76 -17.14 -0.18 2.61 16 27 C 0.09 2.16 5.50 -2.51 -0.01 2.14 16 28 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.38 9.77 7.24 45.56 0.33 10.10 16 30 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.08 1.37 8.02 -51.93 -0.42 0.95 16 32 H 0.07 1.02 6.66 -51.93 -0.35 0.68 16 33 H 0.07 0.82 6.80 -51.93 -0.35 0.47 16 34 H 0.18 2.04 2.92 -53.75 -0.16 1.88 16 35 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.10 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.10 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.13 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.17 2.34 7.67 -52.49 -0.40 1.93 16 40 H 0.06 1.50 8.03 -51.93 -0.42 1.08 16 41 H 0.09 2.24 7.53 -51.93 -0.39 1.85 16 LS Contribution 352.67 15.07 5.31 5.31 Total: -1.00 -30.66 352.67 -6.07 -36.73 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -3.81 Total: 11.83 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -1.98 Total: 7.39 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: -0.10 Total: -42.02 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.56 Total: -30.41 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.08 Total: -3.61 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.66 -6.07 -36.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847963.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.958 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds