Wall clock time and date at job start Wed Apr 1 2020 00:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00275 * 2 1 4 4 H 1.48498 * 109.47457 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46734 * 299.99878 * 3 2 1 6 6 H 1.48498 * 109.47085 * 59.99594 * 3 2 1 7 7 C 1.37881 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00117 * 0.27310 * 7 2 1 10 10 O 1.42902 * 110.88374 * 59.02366 * 9 7 2 11 11 C 1.55159 * 111.00737 * 182.90384 * 9 7 2 12 12 C 1.54320 * 102.94310 * 153.57823 * 11 9 7 13 13 N 1.47029 * 107.27084 * 337.81098 * 12 11 9 14 14 C 1.34776 * 125.64622 * 178.97750 * 13 12 11 15 15 O 1.21578 * 119.99945 * 175.04994 * 14 13 12 16 16 C 1.47619 * 119.99964 * 355.05233 * 14 13 12 17 17 C 1.40277 * 120.50029 * 7.45571 * 16 14 13 18 18 C 1.37959 * 118.35777 * 179.73285 * 17 16 14 19 19 C 1.39172 * 119.25993 * 0.54025 * 18 17 16 20 20 O 1.35499 * 119.52138 * 179.74092 * 19 18 17 21 21 C 1.42900 * 116.99635 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.46831 * 180.02562 * 21 20 19 23 23 F 1.39900 * 109.47004 * 299.99801 * 22 21 20 24 24 F 1.39894 * 109.47324 * 60.00173 * 22 21 20 25 25 N 1.32401 * 120.94891 * 359.71892 * 19 18 17 26 26 C 1.31666 * 121.80135 * 0.02562 * 25 19 18 27 27 C 1.47469 * 108.72110 * 358.97143 * 13 12 11 28 28 H 0.97004 * 120.00175 * 359.97438 * 1 2 3 29 29 H 0.96701 * 114.00207 * 300.69920 * 10 9 7 30 30 H 1.08998 * 110.72048 * 271.94576 * 11 9 7 31 31 H 1.08997 * 110.71516 * 35.03470 * 11 9 7 32 32 H 1.09005 * 109.88016 * 97.22506 * 12 11 9 33 33 H 1.08994 * 109.88456 * 218.39070 * 12 11 9 34 34 H 1.08008 * 120.81995 * 359.97438 * 17 16 14 35 35 H 1.08000 * 120.36918 * 180.25729 * 18 17 16 36 36 H 1.09003 * 109.47068 * 300.00085 * 21 20 19 37 37 H 1.08997 * 109.47004 * 60.00203 * 21 20 19 38 38 H 1.08999 * 109.46645 * 180.02562 * 22 21 20 39 39 H 1.08000 * 119.68403 * 180.02562 * 26 25 19 40 40 H 1.08994 * 110.34677 * 265.25299 * 27 13 12 41 41 H 1.08998 * 110.39808 * 142.91762 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 -0.0051 10 8 0.4060 -2.5945 -1.1535 11 6 2.2254 -3.7043 0.0700 12 6 1.3642 -4.8049 0.7246 13 7 0.2766 -4.1336 1.4514 14 6 -0.7037 -4.7491 2.1418 15 8 -1.5021 -4.0916 2.7809 16 6 -0.8080 -6.2214 2.1221 17 6 0.1931 -6.9981 1.5200 18 6 0.0536 -8.3705 1.5318 19 6 -1.0716 -8.9349 2.1254 20 8 -1.2165 -10.2820 2.1353 21 6 -2.3915 -10.8035 2.7594 22 6 -2.3794 -12.3310 2.6736 23 9 -2.3518 -12.7224 1.3307 24 9 -1.2456 -12.8259 3.3269 25 7 -2.0021 -8.1743 2.6809 26 6 -1.9067 -6.8612 2.6966 27 6 0.4358 -2.6753 1.3003 28 1 -0.4850 0.8401 0.0004 29 1 -0.2527 -1.8894 -1.2168 30 1 2.5434 -4.0059 -0.9280 31 1 3.0879 -3.4647 0.6919 32 1 0.9492 -5.4570 -0.0440 33 1 1.9706 -5.3862 1.4190 34 1 1.0537 -6.5332 1.0620 35 1 0.8069 -8.9998 1.0813 36 1 -2.4127 -10.4988 3.8058 37 1 -3.2748 -10.4176 2.2506 38 1 -3.2758 -12.7287 3.1492 39 1 -2.6859 -6.2739 3.1597 40 1 0.9836 -2.2640 2.1481 41 1 -0.5379 -2.1945 1.2073 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847963.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:40 Heat of formation + Delta-G solvation = -184.018746 kcal Electronic energy + Delta-G solvation = -29414.151499 eV Core-core repulsion = 24737.311311 eV Total energy + Delta-G solvation = -4676.840188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.122 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.93517 -47.98412 -42.10290 -40.92299 -39.24377 -38.59458 -36.29453 -34.18490 -33.87278 -32.63377 -31.74970 -30.67359 -29.69791 -27.27999 -25.79516 -25.04612 -24.05477 -23.26206 -21.53998 -21.04053 -19.95867 -19.13619 -18.57019 -18.53965 -18.18082 -17.94452 -17.27297 -17.05773 -16.89784 -16.73471 -16.60402 -16.15482 -15.58176 -15.09577 -14.93363 -14.87591 -14.77710 -14.75353 -14.54571 -14.36154 -14.25972 -14.04496 -13.49399 -13.46901 -13.32962 -13.13124 -12.86390 -12.38864 -12.35691 -12.27627 -12.18190 -12.10023 -12.01707 -11.34373 -11.17105 -11.09462 -10.78045 -10.60807 -10.30667 -9.83430 -9.46152 -8.25336 -6.41587 -0.41402 0.05636 1.41235 1.45396 1.55476 1.59914 1.73495 2.01176 2.39070 2.67909 2.77023 3.01388 3.02484 3.27528 3.43001 3.48609 3.70615 3.74503 3.81332 3.88600 4.05093 4.12046 4.25224 4.28329 4.36444 4.38454 4.47559 4.59709 4.71538 4.76167 4.93005 5.02986 5.07750 5.13348 5.28512 5.39882 5.47308 5.76898 5.90650 6.05906 6.49001 6.59389 6.68468 7.06907 7.29755 7.36708 8.80271 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.033459 B = 0.002117 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.638127 B =13225.095757 C =13576.914062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.963 3.037 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.231 3.769 10 O -0.588 6.588 11 C -0.115 4.115 12 C 0.089 3.911 13 N -0.606 5.606 14 C 0.566 3.434 15 O -0.592 6.592 16 C -0.225 4.225 17 C -0.034 4.034 18 C -0.184 4.184 19 C 0.329 3.671 20 O -0.303 6.303 21 C 0.008 3.992 22 C 0.269 3.731 23 F -0.216 7.216 24 F -0.215 7.215 25 N -0.547 5.547 26 C 0.196 3.804 27 C 0.107 3.893 28 H 0.269 0.731 29 H 0.375 0.625 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.197 0.803 35 H 0.178 0.822 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.185 0.815 39 H 0.171 0.829 40 H 0.048 0.952 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.564 -22.883 4.608 23.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.211 1.211 7 C -0.591 4.591 8 H 0.089 0.911 9 C 0.191 3.809 10 O -0.396 6.396 11 C -0.153 4.153 12 C -0.032 4.032 13 N -0.336 5.336 14 C 0.357 3.643 15 O -0.475 6.475 16 C -0.231 4.231 17 C -0.058 4.058 18 C -0.204 4.204 19 C 0.151 3.849 20 O -0.210 6.210 21 C -0.068 4.068 22 C 0.216 3.784 23 F -0.197 7.197 24 F -0.196 7.196 25 N -0.271 5.271 26 C 0.039 3.961 27 C -0.016 4.016 28 H 0.078 0.922 29 H 0.224 0.776 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.213 0.787 35 H 0.195 0.805 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.202 0.798 39 H 0.188 0.812 40 H 0.066 0.934 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.316 -23.674 5.111 24.330 hybrid contribution 0.150 2.372 -0.092 2.378 sum -2.166 -21.303 5.019 21.993 Atomic orbital electron populations 1.69768 1.07180 1.28352 1.50390 1.25825 0.95728 1.02856 0.93190 0.85423 0.79263 0.79075 0.77359 1.18639 1.20750 1.21057 1.21856 0.94070 0.91135 1.52005 0.91054 1.19878 0.86735 0.93418 0.80905 1.86073 1.51464 1.54697 1.47411 1.22712 0.97354 0.93291 1.01900 1.22783 0.88188 0.96100 0.96081 1.48656 1.26742 1.08703 1.49530 1.18107 0.79931 0.87619 0.78636 1.90726 1.43790 1.67853 1.45165 1.20639 1.00683 0.92696 1.09051 1.23247 0.98508 0.92886 0.91201 1.21372 0.98936 0.95016 1.05085 1.20343 0.90608 0.83821 0.90161 1.86255 1.43842 1.16502 1.74354 1.24196 0.88486 0.92284 1.01853 1.22693 0.89398 0.90552 0.75730 1.92995 1.97181 1.92300 1.37223 1.92992 1.56375 1.89259 1.81019 1.67379 1.29893 1.06991 1.22840 1.22575 0.94877 0.88253 0.90400 1.22903 1.00361 0.78226 1.00068 0.92153 0.77552 0.89083 0.88819 0.89133 0.87342 0.78707 0.80487 0.87286 0.87407 0.79797 0.81183 0.93417 0.93706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.14 10.69 21.45 0.23 -48.91 16 2 C 0.02 1.26 5.29 84.66 0.45 1.71 16 3 Si 0.96 40.95 29.54 68.60 2.03 42.97 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.55 -27.63 8.25 25.60 0.21 -27.42 16 8 H 0.07 3.44 7.78 -2.91 -0.02 3.41 16 9 C 0.23 10.63 0.88 -10.15 -0.01 10.62 16 10 O -0.59 -29.16 13.17 -148.98 -1.96 -31.12 16 11 C -0.11 -3.92 6.13 31.78 0.19 -3.73 16 12 C 0.09 2.58 4.87 86.73 0.42 3.00 16 13 N -0.61 -23.41 3.33 -818.41 -2.72 -26.13 16 14 C 0.57 22.08 7.81 86.72 0.68 22.75 16 15 O -0.59 -27.78 16.69 -3.96 -0.07 -27.85 16 16 C -0.22 -6.67 5.89 -19.99 -0.12 -6.79 16 17 C -0.03 -0.77 8.67 22.70 0.20 -0.57 16 18 C -0.18 -3.64 10.02 22.43 0.22 -3.41 16 19 C 0.33 7.41 7.49 84.83 0.64 8.04 16 20 O -0.30 -6.14 9.99 -88.00 -0.88 -7.02 16 21 C 0.01 0.10 5.52 71.98 0.40 0.50 16 22 C 0.27 2.81 5.63 71.98 0.41 3.21 16 23 F -0.22 -3.56 17.28 44.97 0.78 -2.79 16 24 F -0.21 -3.49 17.28 44.97 0.78 -2.71 16 25 N -0.55 -13.42 9.18 -307.82 -2.82 -16.25 16 26 C 0.20 5.45 10.76 85.03 0.91 6.37 16 27 C 0.11 5.06 5.50 86.85 0.48 5.54 16 28 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 29 H 0.37 19.83 7.24 -74.06 -0.54 19.30 16 30 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.09 2.94 8.02 -2.39 -0.02 2.92 16 32 H 0.09 2.29 6.66 -2.38 -0.02 2.28 16 33 H 0.11 2.25 6.80 -2.39 -0.02 2.23 16 34 H 0.20 3.61 2.92 -4.10 -0.01 3.60 16 35 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.11 1.26 8.10 -2.39 -0.02 1.24 16 37 H 0.11 1.28 8.10 -2.39 -0.02 1.26 16 38 H 0.19 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.17 4.71 7.67 -2.91 -0.02 4.69 16 40 H 0.05 2.34 8.03 -2.39 -0.02 2.32 16 41 H 0.04 2.46 7.53 -2.39 -0.02 2.44 16 Total: -1.00 -69.56 352.67 1.00 -68.56 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.57 Total: 31.43 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: 5.08 Total: 19.82 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -5.32 Total: -91.29 kcal Atomic # 8 Polarization: -63.08 SS G_CDS: -2.91 Total: -65.99 kcal Atomic # 9 Polarization: -7.05 SS G_CDS: 1.55 Total: -5.50 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.97 kcal Total: -69.56 1.00 -68.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847963.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.461 kcal (2) G-P(sol) polarization free energy of solvation -69.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds