Wall clock time and date at job start Wed Apr 1 2020 00:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00030 * 2 1 4 4 H 1.48499 * 109.46952 * 269.99826 * 3 2 1 5 5 H 1.48496 * 109.47033 * 30.00088 * 3 2 1 6 6 H 1.48498 * 109.46843 * 150.00209 * 3 2 1 7 7 C 1.37880 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00027 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99919 * 0.02562 * 7 2 1 10 10 O 1.42894 * 110.64217 * 56.85408 * 9 7 2 11 11 C 1.55154 * 110.72036 * 180.02562 * 9 7 2 12 12 C 1.54907 * 101.58267 * 154.04031 * 11 9 7 13 13 N 1.47424 * 104.83079 * 322.98411 * 12 11 9 14 14 C 1.34777 * 125.64875 * 204.08950 * 13 12 11 15 15 O 1.21513 * 119.99898 * 180.02562 * 14 13 12 16 16 C 1.48182 * 119.99907 * 0.30546 * 14 13 12 17 17 C 1.39108 * 119.69876 * 179.72007 * 16 14 13 18 18 C 1.39234 * 118.98052 * 180.02562 * 17 16 14 19 19 O 1.35749 * 120.80919 * 179.97438 * 18 17 16 20 20 C 1.42905 * 117.00064 * 179.97438 * 19 18 17 21 21 C 1.52998 * 109.46906 * 179.97438 * 20 19 18 22 22 F 1.39898 * 109.47315 * 299.99793 * 21 20 19 23 23 F 1.39900 * 109.47381 * 60.00232 * 21 20 19 24 24 C 1.39204 * 118.37730 * 0.02562 * 18 17 16 25 25 C 1.38320 * 119.28798 * 0.02562 * 24 18 17 26 26 N 1.31614 * 120.96816 * 359.72294 * 25 24 18 27 27 C 1.47020 * 108.70073 * 24.36061 * 13 12 11 28 28 H 0.97001 * 119.99810 * 359.97438 * 1 2 3 29 29 H 0.96699 * 114.00318 * 303.14295 * 10 9 7 30 30 H 1.08996 * 111.00447 * 35.96196 * 11 9 7 31 31 H 1.08998 * 111.00275 * 272.11444 * 11 9 7 32 32 H 1.09006 * 110.36471 * 204.15245 * 12 11 9 33 33 H 1.08995 * 110.46403 * 81.87765 * 12 11 9 34 34 H 1.07997 * 120.50500 * 0.02562 * 17 16 14 35 35 H 1.08992 * 109.46799 * 300.00055 * 20 19 18 36 36 H 1.09003 * 109.46610 * 59.99843 * 20 19 18 37 37 H 1.09004 * 109.46677 * 180.02562 * 21 20 19 38 38 H 1.08002 * 120.35514 * 180.02562 * 24 18 17 39 39 H 1.07994 * 119.51196 * 179.97438 * 25 24 18 40 40 H 1.08998 * 109.87923 * 118.12715 * 27 13 12 41 41 H 1.09000 * 109.88341 * 239.28771 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 0.3664 -2.5691 -1.1217 11 6 2.2333 -3.7002 -0.0015 12 6 1.3735 -4.8050 0.6616 13 7 0.5894 -4.1040 1.6946 14 6 0.0636 -4.6685 2.7997 15 8 -0.5682 -3.9911 3.5861 16 6 0.2612 -6.1141 3.0588 17 6 -0.2793 -6.6891 4.2044 18 6 -0.0841 -8.0485 4.4333 19 8 -0.5945 -8.6477 5.5392 20 6 -0.3456 -10.0465 5.6927 21 6 -0.9930 -10.5407 6.9878 22 9 -0.4490 -9.8483 8.0749 23 9 -2.3728 -10.3158 6.9348 24 6 0.6483 -8.7780 3.5009 25 6 1.1553 -8.1351 2.3860 26 7 0.9503 -6.8494 2.1939 27 6 0.4704 -2.6883 1.3162 28 1 -0.4850 0.8401 0.0004 29 1 -0.2682 -1.8409 -1.1678 30 1 3.1177 -3.4815 0.5968 31 1 2.5105 -3.9784 -1.0183 32 1 2.0130 -5.5604 1.1185 33 1 0.7105 -5.2637 -0.0719 34 1 -0.8417 -6.0902 4.9053 35 1 -0.7690 -10.5859 4.8455 36 1 0.7295 -10.2217 5.7344 37 1 -0.8027 -11.6076 7.1050 38 1 0.8188 -9.8345 3.6465 39 1 1.7244 -8.6975 1.6606 40 1 -0.5784 -2.4310 1.1683 41 1 0.9024 -2.0590 2.0944 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592848618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:29 Heat of formation + Delta-G solvation = -195.869131 kcal Electronic energy + Delta-G solvation = -29417.489528 eV Core-core repulsion = 24740.135468 eV Total energy + Delta-G solvation = -4677.354059 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.122 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.91840 -47.98346 -42.03779 -40.85667 -39.42319 -38.80651 -36.15982 -34.17730 -33.09533 -32.75924 -31.58232 -30.93291 -29.59655 -27.50258 -25.78645 -24.52496 -24.33616 -23.33726 -21.50835 -21.16982 -19.48559 -19.16225 -18.64649 -18.51031 -18.04999 -17.76589 -17.34309 -16.92784 -16.73819 -16.67806 -16.56013 -16.44050 -15.96795 -15.32896 -15.05341 -14.83840 -14.78928 -14.72029 -14.64335 -14.37731 -14.33477 -13.84768 -13.57281 -13.47675 -13.31856 -12.86772 -12.67618 -12.63903 -12.52635 -12.29869 -12.27132 -12.08640 -11.97705 -11.49169 -11.19437 -10.69823 -10.42694 -10.37237 -10.30529 -10.07487 -9.58764 -8.27582 -6.43758 -0.50548 0.17302 1.41158 1.42948 1.52978 1.54688 1.62651 2.04725 2.37605 2.75076 2.78649 2.98350 3.03288 3.29891 3.48864 3.53375 3.67383 3.86973 3.89335 3.94514 4.05541 4.13576 4.17790 4.27631 4.37434 4.47968 4.50724 4.65798 4.69793 4.85373 4.88202 5.00977 5.16762 5.23003 5.37658 5.42568 5.50881 5.74548 5.98686 6.03319 6.51185 6.62947 6.70853 7.02768 7.28300 7.37883 8.78794 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.025785 B = 0.002214 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.661845 B =12643.186084 C =13156.635250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.023 3.977 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.234 3.766 10 O -0.589 6.589 11 C -0.116 4.116 12 C 0.118 3.882 13 N -0.592 5.592 14 C 0.559 3.441 15 O -0.588 6.588 16 C 0.110 3.890 17 C -0.162 4.162 18 C 0.164 3.836 19 O -0.323 6.323 20 C -0.011 4.011 21 C 0.261 3.739 22 F -0.221 7.221 23 F -0.221 7.221 24 C -0.217 4.217 25 C 0.137 3.863 26 N -0.489 5.489 27 C 0.114 3.886 28 H 0.271 0.729 29 H 0.378 0.622 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.064 0.936 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.192 0.808 38 H 0.197 0.803 39 H 0.214 0.786 40 H 0.032 0.968 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.578 -28.682 8.488 30.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.177 4.177 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.594 4.594 8 H 0.088 0.912 9 C 0.194 3.806 10 O -0.398 6.398 11 C -0.154 4.154 12 C -0.004 4.004 13 N -0.321 5.321 14 C 0.347 3.653 15 O -0.470 6.470 16 C -0.025 4.025 17 C -0.184 4.184 18 C 0.111 3.889 19 O -0.235 6.235 20 C -0.086 4.086 21 C 0.208 3.792 22 F -0.202 7.202 23 F -0.203 7.203 24 C -0.237 4.237 25 C -0.021 4.021 26 N -0.205 5.205 27 C -0.009 4.009 28 H 0.081 0.919 29 H 0.229 0.771 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.141 0.859 33 H 0.082 0.918 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.209 0.791 38 H 0.214 0.786 39 H 0.230 0.770 40 H 0.050 0.950 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.583 -28.256 8.308 29.669 hybrid contribution -0.977 1.874 1.108 2.386 sum 2.606 -26.382 9.416 28.133 Atomic orbital electron populations 1.69690 1.07209 1.28583 1.50408 1.25871 0.95837 1.02991 0.93049 0.85417 0.78580 0.78395 0.78434 1.19581 1.21141 1.19153 1.21861 0.94041 0.91232 1.52230 0.91223 1.19719 0.86337 0.93804 0.80783 1.86065 1.51472 1.53018 1.49267 1.22848 0.97176 0.93749 1.01656 1.22711 0.93864 0.94880 0.88897 1.48685 1.50879 1.11116 1.21454 1.18210 0.79411 0.87073 0.80579 1.90722 1.43911 1.64380 1.47957 1.20374 0.97257 0.92551 0.92351 1.21255 1.03791 0.94289 0.99083 1.19039 0.92089 0.91009 0.86795 1.86132 1.72216 1.25602 1.39548 1.24681 1.05214 0.79299 0.99400 1.22874 0.73923 0.99601 0.82766 1.92997 1.85589 1.83279 1.58379 1.92997 1.34069 1.96594 1.96603 1.22863 1.01374 1.03883 0.95598 1.23539 0.94112 0.88643 0.95828 1.67855 1.14561 1.09013 1.29067 1.22705 0.99414 0.79381 0.99400 0.91938 0.77143 0.89972 0.89040 0.85931 0.91787 0.85169 0.85292 0.85228 0.79120 0.78615 0.76997 0.94967 0.94364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.29 10.97 21.45 0.24 -51.06 16 2 C 0.02 1.23 5.28 84.65 0.45 1.67 16 3 Si 0.97 42.86 29.54 68.60 2.03 44.89 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.56 -29.88 8.12 25.60 0.21 -29.67 16 8 H 0.07 3.62 7.76 -2.91 -0.02 3.60 16 9 C 0.23 11.84 0.86 -10.35 -0.01 11.83 16 10 O -0.59 -31.19 13.07 -148.98 -1.95 -33.14 16 11 C -0.12 -4.71 6.23 31.98 0.20 -4.51 16 12 C 0.12 4.37 5.93 86.85 0.52 4.88 16 13 N -0.59 -26.63 3.33 -814.80 -2.71 -29.34 16 14 C 0.56 24.83 7.84 86.89 0.68 25.51 16 15 O -0.59 -30.38 16.65 -3.76 -0.06 -30.45 16 16 C 0.11 3.73 6.72 41.85 0.28 4.01 16 17 C -0.16 -4.89 9.60 22.72 0.22 -4.67 16 18 C 0.16 3.38 6.73 22.74 0.15 3.53 16 19 O -0.32 -6.08 10.04 -90.74 -0.91 -6.99 16 20 C -0.01 -0.07 4.99 71.98 0.36 0.29 16 21 C 0.26 1.92 5.63 71.98 0.41 2.32 16 22 F -0.22 -3.47 17.28 44.97 0.78 -2.69 16 23 F -0.22 -3.49 17.28 44.97 0.78 -2.71 16 24 C -0.22 -2.57 9.12 22.52 0.21 -2.37 16 25 C 0.14 2.08 11.17 84.74 0.95 3.02 16 26 N -0.49 -12.95 6.59 -185.13 -1.22 -14.17 16 27 C 0.11 6.00 5.54 86.73 0.48 6.48 16 28 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.38 20.92 6.98 -74.06 -0.52 20.41 16 30 H 0.08 3.17 8.03 -2.39 -0.02 3.15 16 31 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 32 H 0.12 3.83 5.88 -2.38 -0.01 3.81 16 33 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.13 4.46 7.64 -2.91 -0.02 4.44 16 35 H 0.13 -0.03 7.71 -2.39 -0.02 -0.05 16 36 H 0.13 -0.05 7.70 -2.39 -0.02 -0.07 16 37 H 0.19 -0.86 8.14 -2.38 -0.02 -0.88 16 38 H 0.20 0.13 6.45 -2.91 -0.02 0.11 16 39 H 0.21 1.20 8.06 -2.91 -0.02 1.17 16 40 H 0.03 1.86 8.07 -2.39 -0.02 1.84 16 41 H 0.04 2.18 7.82 -2.39 -0.02 2.16 16 Total: -1.00 -80.50 354.64 2.64 -77.87 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.58 Total: 25.46 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: 5.09 Total: 22.34 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -3.69 Total: -94.57 kcal Atomic # 8 Polarization: -67.66 SS G_CDS: -2.92 Total: -70.58 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 1.55 Total: -5.40 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -80.50 2.64 -77.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.000 kcal (2) G-P(sol) polarization free energy of solvation -80.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds