Wall clock time and date at job start Wed Apr 1 2020 00:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38275 * 119.94550 * 2 1 4 4 C 1.38494 * 120.12216 * 179.97438 * 3 2 1 5 5 F 1.35099 * 119.98930 * 180.02562 * 4 3 2 6 6 C 1.38348 * 120.02539 * 0.02562 * 4 3 2 7 7 S 1.76194 * 120.05300 * 179.97438 * 6 4 3 8 8 N 1.65599 * 107.22014 * 270.01745 * 7 6 4 9 9 O 1.42101 * 106.40075 * 23.55527 * 7 6 4 10 10 O 1.42095 * 106.40610 * 156.47681 * 7 6 4 11 11 C 1.38857 * 119.89869 * 359.97438 * 6 4 3 12 12 N 1.39663 * 120.05870 * 180.02562 * 11 6 4 13 13 C 1.46848 * 110.99990 * 244.18827 * 12 11 6 14 14 C 1.53039 * 109.52327 * 174.16341 * 13 12 11 15 15 C 1.53113 * 109.27780 * 59.18064 * 14 13 12 16 16 C 1.50704 * 109.52517 * 182.43869 * 15 14 13 17 17 H 1.08002 * 120.00259 * 119.67997 * 16 15 14 18 18 C 1.37876 * 119.99848 * 299.68729 * 16 15 14 19 19 N 1.31510 * 120.00231 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99958 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47101 * 59.99713 * 20 18 16 22 22 H 1.48493 * 109.47157 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46959 * 299.99992 * 20 18 16 24 24 C 1.53116 * 109.16463 * 302.34312 * 15 14 13 25 25 C 1.46849 * 110.99987 * 119.98314 * 12 11 6 26 26 C 1.38089 * 119.95216 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46928 * 90.00517 * 1 2 3 28 28 H 1.09008 * 109.47144 * 209.99894 * 1 2 3 29 29 H 1.08998 * 109.47664 * 329.99551 * 1 2 3 30 30 H 1.07999 * 119.93946 * 359.70412 * 3 2 1 31 31 H 0.96999 * 120.00375 * 149.99794 * 8 7 6 32 32 H 0.97006 * 119.99682 * 330.00437 * 8 7 6 33 33 H 1.09004 * 109.46522 * 294.17886 * 13 12 11 34 34 H 1.09004 * 109.46133 * 54.14876 * 13 12 11 35 35 H 1.09001 * 109.50564 * 299.23869 * 14 13 12 36 36 H 1.08996 * 109.50375 * 179.12215 * 14 13 12 37 37 H 1.09002 * 109.52885 * 62.25206 * 15 14 13 38 38 H 0.96999 * 119.99988 * 180.02562 * 19 18 16 39 39 H 1.09001 * 109.50644 * 297.71713 * 24 15 14 40 40 H 1.08997 * 109.50945 * 177.59457 * 24 15 14 41 41 H 1.09000 * 109.45961 * 305.85490 * 25 12 11 42 42 H 1.08998 * 109.46398 * 65.81853 * 25 12 11 43 43 H 1.07999 * 120.01279 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1982 0.0000 4 6 3.5822 1.2024 0.0005 5 9 4.2538 2.3746 0.0011 6 6 4.2781 0.0067 0.0005 7 16 6.0401 0.0113 0.0005 8 7 6.5303 0.0131 -1.5812 9 8 6.4380 1.2620 0.5453 10 8 6.4446 -1.2374 0.5446 11 6 3.5860 -1.1970 0.0005 12 7 4.2852 -2.4060 0.0011 13 6 4.0324 -3.1607 -1.2330 14 6 4.9230 -4.4049 -1.2632 15 6 4.6187 -5.2741 -0.0399 16 6 5.5345 -6.4710 -0.0322 17 1 6.2097 -6.6290 0.7958 18 6 5.5103 -7.3642 -1.0822 19 7 4.6878 -7.1721 -2.0902 20 14 6.6459 -8.8475 -1.0729 21 1 6.3556 -9.6857 0.1181 22 1 6.4275 -9.6457 -2.3059 23 1 8.0577 -8.3896 -1.0238 24 6 4.8434 -4.4498 1.2308 25 6 3.9551 -3.2043 1.1886 26 6 2.1964 -1.1965 0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8901 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.6554 2.1324 -0.0048 31 1 7.3676 0.4354 -1.8290 32 1 5.9800 -0.4082 -2.2600 33 1 2.9855 -3.4625 -1.2662 34 1 4.2566 -2.5326 -2.0952 35 1 5.9703 -4.1034 -1.2440 36 1 4.7239 -4.9730 -2.1718 37 1 3.5819 -5.6080 -0.0789 38 1 4.6705 -7.8007 -2.8287 39 1 5.8894 -4.1489 1.2893 40 1 4.5874 -5.0499 2.1039 41 1 4.1231 -2.6078 2.0853 42 1 2.9086 -3.5059 1.1441 43 1 1.6559 -2.1314 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601139615.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:16 Heat of formation + Delta-G solvation = -107.082777 kcal Electronic energy + Delta-G solvation = -29215.276243 eV Core-core repulsion = 25107.985425 eV Total energy + Delta-G solvation = -4107.290818 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.120 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.23487 -41.38566 -39.04933 -37.99565 -36.71858 -35.91595 -34.07349 -33.95214 -33.00588 -31.52885 -30.35735 -28.48889 -27.50614 -24.63655 -23.78345 -23.35843 -22.33681 -20.56945 -20.30248 -19.35708 -18.43740 -18.32950 -18.14115 -17.95285 -17.11748 -16.84520 -16.78343 -16.39634 -16.06759 -15.82077 -15.38811 -15.07653 -14.79844 -14.59848 -14.37902 -14.20075 -14.08818 -13.53115 -13.34594 -13.16839 -13.12719 -12.94913 -12.89515 -12.87114 -12.75788 -12.71132 -12.63565 -12.34152 -12.07914 -11.90841 -11.87325 -11.34735 -11.26485 -10.83209 -10.68017 -10.34384 -10.27254 -9.85565 -9.41930 -8.04973 -6.15894 -0.62472 -0.36861 -0.08205 1.43574 1.44826 1.52058 2.03627 2.30067 2.46931 2.54740 2.76183 3.07931 3.22522 3.35931 3.67254 3.89698 4.03983 4.17931 4.23537 4.28500 4.35743 4.49135 4.50003 4.54595 4.70970 4.77203 4.79990 4.84223 4.92053 4.96896 5.11821 5.19025 5.24424 5.25924 5.27947 5.36606 5.53769 5.62802 5.69462 5.91638 6.06595 6.22743 6.29340 6.35883 6.47099 6.93145 7.50829 8.99510 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.015520 B = 0.003859 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.677889 B = 7254.924144 C = 8378.101139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.019 3.981 3 C -0.177 4.177 4 C 0.192 3.808 5 F -0.121 7.121 6 C -0.719 4.719 7 S 2.713 3.287 8 N -1.234 6.234 9 O -0.999 6.999 10 O -0.952 6.952 11 C 0.217 3.783 12 N -0.512 5.512 13 C 0.070 3.930 14 C -0.095 4.095 15 C 0.047 3.953 16 C -0.533 4.533 17 H 0.045 0.955 18 C 0.019 3.981 19 N -0.914 5.914 20 Si 0.947 3.053 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.277 1.277 24 C -0.100 4.100 25 C 0.080 3.920 26 C -0.188 4.188 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.175 0.825 31 H 0.428 0.572 32 H 0.425 0.575 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.031 0.969 36 H 0.071 0.929 37 H -0.001 1.001 38 H 0.260 0.740 39 H 0.047 0.953 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.046 0.954 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.132 18.597 -0.277 20.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.018 3.982 3 C -0.197 4.197 4 C 0.171 3.829 5 F -0.099 7.099 6 C -0.808 4.808 7 S 2.800 3.200 8 N -0.912 5.912 9 O -0.988 6.988 10 O -0.940 6.940 11 C 0.122 3.878 12 N -0.234 5.234 13 C -0.055 4.055 14 C -0.134 4.134 15 C 0.029 3.971 16 C -0.571 4.571 17 H 0.063 0.937 18 C -0.180 4.180 19 N -0.553 5.553 20 Si 0.773 3.227 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.202 1.202 24 C -0.138 4.138 25 C -0.046 4.046 26 C -0.209 4.209 27 H 0.116 0.884 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.193 0.807 31 H 0.260 0.740 32 H 0.253 0.747 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.017 0.983 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.150 18.628 0.515 20.340 hybrid contribution -0.248 -1.103 -0.771 1.369 sum -8.398 17.525 -0.256 19.435 Atomic orbital electron populations 1.21085 0.87022 1.05103 1.04667 1.20309 0.98456 0.90879 0.88565 1.21438 0.90869 1.01143 1.06211 1.17139 0.91149 0.79280 0.95375 1.91633 1.80609 1.44859 1.92821 1.30400 1.27321 0.97161 1.25947 1.01075 0.72897 0.72850 0.73212 1.52788 1.35343 1.75078 1.27949 1.93560 1.81931 1.45542 1.77799 1.93685 1.79695 1.44122 1.76532 1.18357 0.91092 0.89395 0.88986 1.59673 1.56219 1.03196 1.04338 1.22250 0.98550 0.95027 0.89667 1.21441 0.97063 0.93267 1.01583 1.18640 0.94673 0.92296 0.91538 1.21530 1.21717 1.08760 1.05089 0.93685 1.25605 0.96865 1.00213 0.95317 1.69957 1.38382 1.37535 1.09466 0.85792 0.79613 0.79913 0.77379 1.19924 1.20721 1.20210 1.21540 0.99123 0.94360 0.98730 1.22023 0.97603 0.94012 0.90963 1.22020 0.93839 1.00054 1.04980 0.88354 0.89981 0.88632 0.80742 0.74018 0.74654 0.94175 0.90117 0.95005 0.91050 0.98259 0.93046 0.93375 0.92582 0.90864 0.93611 0.83865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.01 71.24 0.71 -0.42 16 2 C 0.02 0.32 5.88 -19.89 -0.12 0.21 16 3 C -0.18 -3.13 9.68 22.34 0.22 -2.91 16 4 C 0.19 4.64 7.20 22.36 0.16 4.80 16 5 F -0.12 -3.19 15.34 44.97 0.69 -2.50 16 6 C -0.72 -19.87 6.00 22.44 0.13 -19.74 16 7 S 2.71 81.68 6.13 -56.49 -0.35 81.33 16 8 N -1.23 -26.81 9.52 37.02 0.35 -26.46 16 9 O -1.00 -34.19 16.20 -128.00 -2.07 -36.26 16 10 O -0.95 -36.34 15.88 -128.00 -2.03 -38.37 16 11 C 0.22 6.16 4.64 38.21 0.18 6.33 16 12 N -0.51 -17.49 2.30 -695.39 -1.60 -19.09 16 13 C 0.07 2.50 5.17 86.33 0.45 2.95 16 14 C -0.10 -4.41 5.12 30.65 0.16 -4.25 16 15 C 0.05 2.34 2.16 -11.46 -0.02 2.32 16 16 C -0.53 -29.78 8.56 25.60 0.22 -29.56 16 17 H 0.04 2.53 7.74 -2.91 -0.02 2.51 16 18 C 0.02 1.03 5.31 84.65 0.45 1.48 16 19 N -0.91 -51.43 11.37 21.45 0.24 -51.18 16 20 Si 0.95 43.88 29.54 68.60 2.03 45.90 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 24 C -0.10 -4.33 5.32 30.65 0.16 -4.16 16 25 C 0.08 2.83 5.11 86.33 0.44 3.27 16 26 C -0.19 -4.24 8.35 22.41 0.19 -4.06 16 27 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.08 0.74 8.08 -2.38 -0.02 0.72 16 29 H 0.09 0.55 8.08 -2.39 -0.02 0.53 16 30 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.43 7.33 8.96 -96.74 -0.87 6.47 16 32 H 0.42 7.74 8.96 -96.74 -0.87 6.87 16 33 H 0.04 1.37 7.55 -2.39 -0.02 1.35 16 34 H 0.08 2.45 8.11 -2.39 -0.02 2.43 16 35 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 3.65 6.17 -2.39 -0.01 3.63 16 37 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 39 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.07 2.45 8.11 -2.39 -0.02 2.43 16 42 H 0.05 1.48 7.33 -2.39 -0.02 1.46 16 43 H 0.14 3.07 7.13 -2.91 -0.02 3.05 16 Total: -1.00 -72.67 359.43 -0.09 -72.76 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -0.68 Total: 17.60 kcal Atomic # 6 Polarization: -47.07 SS G_CDS: 3.32 Total: -43.74 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -1.00 Total: -96.73 kcal Atomic # 8 Polarization: -70.53 SS G_CDS: -4.11 Total: -74.63 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.69 Total: -2.50 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 81.68 SS G_CDS: -0.35 Total: 81.33 kcal Total: -72.67 -0.09 -72.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601139615.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.318 kcal (2) G-P(sol) polarization free energy of solvation -72.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds