Wall clock time and date at job start Wed Apr 1 2020 00:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38270 * 119.95158 * 2 1 4 4 C 1.38497 * 120.12476 * 179.73108 * 3 2 1 5 5 F 1.35098 * 119.98741 * 180.25457 * 4 3 2 6 6 C 1.38339 * 120.01903 * 0.54306 * 4 3 2 7 7 S 1.76201 * 120.04747 * 179.70886 * 6 4 3 8 8 N 1.65601 * 107.21907 * 270.02136 * 7 6 4 9 9 O 1.42098 * 106.40433 * 23.56274 * 7 6 4 10 10 O 1.42105 * 106.40210 * 156.48484 * 7 6 4 11 11 C 1.38848 * 119.90571 * 359.73219 * 6 4 3 12 12 N 1.39666 * 120.06469 * 179.97438 * 11 6 4 13 13 C 1.46840 * 111.00556 * 116.06614 * 12 11 6 14 14 C 1.53031 * 109.52785 * 185.83944 * 13 12 11 15 15 C 1.53116 * 109.27904 * 300.82112 * 14 13 12 16 16 C 1.53115 * 109.16062 * 57.65450 * 15 14 13 17 17 H 1.08996 * 109.50503 * 62.32886 * 16 15 14 18 18 C 1.50701 * 109.50486 * 182.40525 * 16 15 14 19 19 H 1.08001 * 120.00339 * 119.99619 * 18 16 15 20 20 C 1.37880 * 120.00075 * 300.00004 * 18 16 15 21 21 N 1.31512 * 120.00130 * 180.02562 * 20 18 16 22 22 Si 1.86803 * 119.99774 * 359.97438 * 20 18 16 23 23 H 1.48501 * 109.46932 * 90.00410 * 22 20 18 24 24 H 1.48496 * 109.46835 * 210.00050 * 22 20 18 25 25 H 1.48495 * 109.47093 * 330.00219 * 22 20 18 26 26 C 1.46847 * 111.00093 * 240.28066 * 12 11 6 27 27 C 1.38093 * 119.94608 * 180.27998 * 2 1 3 28 28 H 1.09001 * 109.46953 * 269.72293 * 1 2 3 29 29 H 1.09000 * 109.47318 * 29.71890 * 1 2 3 30 30 H 1.09000 * 109.47161 * 149.72521 * 1 2 3 31 31 H 1.08007 * 119.93448 * 0.02562 * 3 2 1 32 32 H 0.97002 * 120.00239 * 149.99465 * 8 7 6 33 33 H 0.97000 * 120.00241 * 330.00416 * 8 7 6 34 34 H 1.09002 * 109.46587 * 305.85975 * 13 12 11 35 35 H 1.09005 * 109.46397 * 65.82046 * 13 12 11 36 36 H 1.08996 * 109.50420 * 60.76482 * 14 13 12 37 37 H 1.09000 * 109.50417 * 180.87994 * 14 13 12 38 38 H 1.09007 * 109.52414 * 177.55984 * 15 14 13 39 39 H 1.09002 * 109.52763 * 297.68300 * 15 14 13 40 40 H 0.97003 * 120.00122 * 179.97438 * 21 20 18 41 41 H 1.09001 * 109.45746 * 294.17324 * 26 12 11 42 42 H 1.08998 * 109.46703 * 54.14123 * 26 12 11 43 43 H 1.07992 * 120.01539 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1980 0.0000 4 6 3.5823 1.2022 0.0056 5 9 4.2540 2.3744 0.0108 6 6 4.2781 0.0065 -0.0001 7 16 6.0401 0.0110 -0.0007 8 7 6.5298 0.0201 -1.5826 9 8 6.4384 1.2590 0.5498 10 8 6.4448 -1.2404 0.5373 11 6 3.5859 -1.1971 -0.0059 12 7 4.2850 -2.4062 -0.0122 13 6 4.0275 -3.1695 1.2155 14 6 4.9178 -4.4139 1.2404 15 6 4.6183 -5.2745 0.0098 16 6 4.8479 -4.4413 -1.2541 17 1 5.8943 -4.1408 -1.3067 18 6 4.4986 -5.2625 -2.4684 19 1 3.7229 -4.9284 -3.1415 20 6 5.1694 -6.4405 -2.7203 21 7 4.8650 -7.1569 -3.7803 22 14 6.5116 -7.0182 -1.5565 23 1 5.9154 -7.8735 -0.4990 24 1 7.5213 -7.7999 -2.3146 25 1 7.1649 -5.8405 -0.9310 26 6 3.9596 -3.1960 -1.2066 27 6 2.1964 -1.1966 -0.0058 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3634 0.8925 -0.5095 30 1 -0.3633 -0.8875 -0.5181 31 1 1.6555 2.1323 0.0004 32 1 7.3670 0.4436 -1.8288 33 1 5.9793 -0.3979 -2.2632 34 1 4.2483 -2.5476 2.0830 35 1 2.9804 -3.4715 1.2426 36 1 5.9652 -4.1124 1.2274 37 1 4.7151 -4.9884 2.1442 38 1 5.2807 -6.1402 0.0007 39 1 3.5816 -5.6095 0.0431 40 1 5.3371 -7.9855 -3.9577 41 1 2.9129 -3.4978 -1.1683 42 1 4.1312 -2.5933 -2.0985 43 1 1.6558 -2.1314 -0.0108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601192678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:32 Heat of formation + Delta-G solvation = -102.802290 kcal Electronic energy + Delta-G solvation = -29474.931355 eV Core-core repulsion = 25367.826153 eV Total energy + Delta-G solvation = -4107.105202 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.120 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.23911 -41.43426 -39.16731 -38.01070 -36.73172 -35.83718 -34.29089 -34.00909 -33.27951 -32.04053 -30.34895 -28.49150 -26.90753 -25.77511 -23.57318 -23.07091 -22.41037 -20.60667 -20.42913 -19.39169 -18.85620 -18.32951 -18.09591 -17.96501 -17.14274 -17.08932 -16.84560 -16.10615 -16.08620 -15.91008 -15.47811 -15.35768 -14.96413 -14.80360 -14.57585 -14.27059 -14.16528 -13.78600 -13.53169 -13.23611 -13.17442 -12.97851 -12.93676 -12.86616 -12.80595 -12.76072 -12.70503 -12.31615 -11.96506 -11.93010 -11.75154 -11.42179 -11.28338 -11.01885 -10.86732 -10.60762 -10.27943 -9.85668 -9.44504 -8.27960 -6.30048 -0.63009 -0.36852 -0.08146 1.31322 1.39733 1.50493 2.03395 2.28699 2.35081 2.52583 2.74309 3.07154 3.09080 3.35281 3.66491 3.86944 4.03211 4.09343 4.11703 4.19487 4.27043 4.42289 4.49102 4.53849 4.57394 4.69987 4.73925 4.77980 4.79951 4.89660 4.99898 5.04085 5.15453 5.18623 5.23733 5.26346 5.29008 5.44974 5.58175 5.66165 5.74997 5.98410 6.23113 6.32758 6.33461 6.76713 7.36035 8.88116 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.004524 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.183925 B = 6187.416504 C = 7141.138499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.019 3.981 3 C -0.178 4.178 4 C 0.191 3.809 5 F -0.122 7.122 6 C -0.720 4.720 7 S 2.714 3.286 8 N -1.237 6.237 9 O -0.997 6.997 10 O -0.951 6.951 11 C 0.219 3.781 12 N -0.519 5.519 13 C 0.077 3.923 14 C -0.115 4.115 15 C -0.122 4.122 16 C 0.019 3.981 17 H 0.025 0.975 18 C -0.511 4.511 19 H 0.043 0.957 20 C 0.021 3.979 21 N -0.947 5.947 22 Si 0.939 3.061 23 H -0.267 1.267 24 H -0.302 1.302 25 H -0.254 1.254 26 C 0.090 3.910 27 C -0.187 4.187 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.174 0.826 32 H 0.427 0.573 33 H 0.424 0.576 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.033 0.967 39 H 0.060 0.940 40 H 0.264 0.736 41 H 0.043 0.957 42 H 0.068 0.932 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.818 17.509 9.364 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.017 3.983 3 C -0.197 4.197 4 C 0.170 3.830 5 F -0.100 7.100 6 C -0.809 4.809 7 S 2.801 3.199 8 N -0.914 5.914 9 O -0.987 6.987 10 O -0.939 6.939 11 C 0.123 3.877 12 N -0.241 5.241 13 C -0.048 4.048 14 C -0.152 4.152 15 C -0.160 4.160 16 C 0.000 4.000 17 H 0.043 0.957 18 C -0.549 4.549 19 H 0.061 0.939 20 C -0.176 4.176 21 N -0.587 5.587 22 Si 0.767 3.233 23 H -0.193 1.193 24 H -0.231 1.231 25 H -0.178 1.178 26 C -0.035 4.035 27 C -0.208 4.208 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.192 0.808 32 H 0.259 0.741 33 H 0.253 0.747 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.087 0.913 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.750 17.484 10.202 21.339 hybrid contribution -0.269 -0.774 -0.763 1.120 sum -7.019 16.710 9.439 20.435 Atomic orbital electron populations 1.21086 0.87051 1.05110 1.04648 1.20313 0.98456 0.90931 0.88562 1.21443 0.90900 1.01169 1.06232 1.17139 0.91151 0.79309 0.95393 1.91631 1.80608 1.44898 1.92826 1.30399 1.27341 0.97213 1.25963 1.01022 0.72874 0.72918 0.73054 1.52833 1.35367 1.75178 1.28023 1.93564 1.81914 1.45652 1.77584 1.93652 1.79709 1.43852 1.76732 1.18296 0.91078 0.89297 0.88995 1.59653 1.56513 1.03366 1.04604 1.22031 0.98308 0.94306 0.90188 1.21610 1.00419 0.95284 0.97917 1.21938 1.00557 0.97714 0.95777 1.19081 0.96128 0.92226 0.92585 0.95696 1.21247 1.19632 1.05781 1.08267 0.93875 1.25664 0.98790 0.96778 0.96375 1.70018 1.43811 1.15790 1.29106 0.85987 0.79512 0.78971 0.78805 1.19319 1.23051 1.17808 1.21990 0.97904 0.93776 0.89838 1.22026 0.93814 1.00104 1.04850 0.88296 0.88714 0.89988 0.80833 0.74077 0.74731 0.90057 0.92773 0.92215 0.89610 0.94874 0.92169 0.92656 0.93902 0.91336 0.83609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.01 71.24 0.71 -0.43 16 2 C 0.02 0.31 5.88 -19.89 -0.12 0.19 16 3 C -0.18 -3.17 9.67 22.34 0.22 -2.95 16 4 C 0.19 4.63 7.20 22.36 0.16 4.79 16 5 F -0.12 -3.21 15.34 44.97 0.69 -2.52 16 6 C -0.72 -19.66 6.00 22.44 0.13 -19.53 16 7 S 2.71 80.44 6.13 -56.49 -0.35 80.09 16 8 N -1.24 -28.49 9.52 37.02 0.35 -28.14 16 9 O -1.00 -33.52 16.20 -128.00 -2.07 -35.60 16 10 O -0.95 -34.30 15.86 -128.00 -2.03 -36.33 16 11 C 0.22 6.04 4.64 38.21 0.18 6.21 16 12 N -0.52 -16.81 2.31 -695.44 -1.61 -18.42 16 13 C 0.08 2.30 5.14 86.33 0.44 2.75 16 14 C -0.11 -3.87 6.09 30.64 0.19 -3.68 16 15 C -0.12 -4.99 4.73 30.67 0.15 -4.84 16 16 C 0.02 0.86 1.85 -11.49 -0.02 0.84 16 17 H 0.02 1.22 7.21 -2.39 -0.02 1.20 16 18 C -0.51 -27.82 9.15 25.60 0.23 -27.58 16 19 H 0.04 2.54 7.99 -2.91 -0.02 2.52 16 20 C 0.02 1.22 5.45 84.66 0.46 1.68 16 21 N -0.95 -57.93 13.96 21.45 0.30 -57.63 16 22 Si 0.94 45.48 24.35 68.60 1.67 47.15 16 23 H -0.27 -12.28 6.89 99.48 0.69 -11.59 16 24 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 25 H -0.25 -11.95 6.53 99.48 0.65 -11.30 16 26 C 0.09 3.31 4.34 86.33 0.37 3.69 16 27 C -0.19 -4.11 8.34 22.41 0.19 -3.92 16 28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 0.57 8.08 -2.39 -0.02 0.55 16 30 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 31 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.43 7.85 8.96 -96.74 -0.87 6.98 16 33 H 0.42 8.85 8.96 -96.74 -0.87 7.98 16 34 H 0.08 2.25 8.11 -2.39 -0.02 2.23 16 35 H 0.05 1.41 7.54 -2.38 -0.02 1.39 16 36 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.09 2.38 8.14 -2.39 -0.02 2.37 16 38 H 0.03 1.44 3.35 -2.38 -0.01 1.44 16 39 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.04 1.51 7.34 -2.39 -0.02 1.49 16 42 H 0.07 2.46 8.11 -2.39 -0.02 2.45 16 43 H 0.15 2.96 7.13 -2.91 -0.02 2.94 16 Total: -1.00 -74.63 352.50 -0.49 -75.12 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.75 Total: 19.06 kcal Atomic # 6 Polarization: -46.08 SS G_CDS: 3.30 Total: -42.79 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -0.95 Total: -104.18 kcal Atomic # 8 Polarization: -67.83 SS G_CDS: -4.10 Total: -71.93 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.69 Total: -2.52 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.67 Total: 47.15 kcal Atomic # 16 Polarization: 80.44 SS G_CDS: -0.35 Total: 80.09 kcal Total: -74.63 -0.49 -75.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601192678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.680 kcal (2) G-P(sol) polarization free energy of solvation -74.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds