Wall clock time and date at job start Wed Apr 1 2020 00:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38216 * 119.98923 * 2 1 4 4 C 1.38434 * 119.97780 * 180.02562 * 3 2 1 5 5 F 1.35101 * 120.02743 * 179.97438 * 4 3 2 6 6 C 1.38476 * 119.94834 * 359.97438 * 4 3 2 7 7 C 1.38176 * 119.97554 * 0.02562 * 6 4 3 8 8 C 1.38218 * 119.98918 * 180.02562 * 2 1 3 9 9 S 1.76203 * 119.97361 * 0.02562 * 8 2 1 10 10 O 1.42099 * 106.40594 * 181.32953 * 9 8 2 11 11 O 1.42097 * 106.40326 * 314.25365 * 9 8 2 12 12 N 1.65604 * 107.21779 * 67.79213 * 9 8 2 13 13 C 1.47079 * 120.88292 * 264.00760 * 12 9 8 14 14 C 1.53694 * 108.28099 * 128.75349 * 13 12 9 15 15 N 1.46894 * 109.25762 * 54.08094 * 14 13 12 16 16 C 1.46897 * 110.99969 * 172.60995 * 15 14 13 17 17 C 1.50696 * 109.47059 * 294.30079 * 16 15 14 18 18 H 1.07997 * 120.00037 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00037 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99970 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00047 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46991 * 90.00035 * 21 19 17 23 23 H 1.48501 * 109.47181 * 209.99846 * 21 19 17 24 24 H 1.48497 * 109.47077 * 329.99993 * 21 19 17 25 25 C 1.46902 * 111.26922 * 296.75616 * 15 14 13 26 26 C 1.47079 * 120.88168 * 84.27997 * 12 9 8 27 27 H 1.08994 * 109.47378 * 95.80942 * 1 2 3 28 28 H 1.09001 * 109.46744 * 215.81245 * 1 2 3 29 29 H 1.08999 * 109.47104 * 335.80851 * 1 2 3 30 30 H 1.08007 * 120.01209 * 0.27915 * 3 2 1 31 31 H 1.08003 * 120.01682 * 180.02562 * 6 4 3 32 32 H 1.08002 * 119.99118 * 179.97438 * 7 6 4 33 33 H 1.09006 * 109.62460 * 248.52265 * 13 12 9 34 34 H 1.08999 * 109.62468 * 9.09755 * 13 12 9 35 35 H 1.09007 * 109.64548 * 294.07802 * 14 13 12 36 36 H 1.08998 * 109.41892 * 173.95172 * 14 13 12 37 37 H 1.09004 * 109.47101 * 54.30222 * 16 15 14 38 38 H 1.09000 * 109.47527 * 174.29832 * 16 15 14 39 39 H 0.96994 * 120.00376 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.49786 * 303.14773 * 25 15 14 41 41 H 1.08993 * 109.49771 * 183.06509 * 25 15 14 42 42 H 1.09001 * 109.63019 * 350.89505 * 26 12 9 43 43 H 1.08991 * 109.62941 * 111.47895 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1971 0.0000 4 6 3.5822 1.1968 -0.0005 5 9 4.2585 2.3664 -0.0011 6 6 4.2733 -0.0032 -0.0005 7 6 3.5806 -1.1987 -0.0005 8 6 2.1979 -1.1971 -0.0005 9 16 1.3159 -2.7225 -0.0019 10 8 2.2947 -3.7521 0.0294 11 8 0.2911 -2.5944 0.9741 12 7 0.5535 -2.8466 -1.4668 13 6 -0.8507 -2.4381 -1.6241 14 6 -0.9429 -1.4812 -2.8232 15 7 -0.3477 -2.1235 -4.0026 16 6 -0.5706 -1.3170 -5.2100 17 6 -2.0445 -1.2750 -5.5210 18 1 -2.7456 -1.7950 -4.8851 19 6 -2.4980 -0.5727 -6.6174 20 7 -1.6443 0.0610 -7.3915 21 14 -4.3251 -0.5200 -7.0025 22 1 -4.9427 0.6418 -6.3141 23 1 -4.5182 -0.3865 -8.4689 24 1 -4.9667 -1.7734 -6.5308 25 6 1.0836 -2.3854 -3.8013 26 6 1.2608 -3.3738 -2.6436 27 1 -0.3634 -0.1040 -1.0223 28 1 -0.3633 -0.8334 0.6013 29 1 -0.3633 0.9374 0.4211 30 1 1.6579 2.1325 0.0046 31 1 5.3533 -0.0047 -0.0005 32 1 4.1193 -2.1348 -0.0010 33 1 -1.4696 -3.3170 -1.8046 34 1 -1.1872 -1.9291 -0.7209 35 1 -0.4039 -0.5604 -2.5996 36 1 -1.9893 -1.2510 -3.0235 37 1 -0.2055 -0.3037 -5.0425 38 1 -0.0349 -1.7622 -6.0483 39 1 -1.9632 0.5548 -8.1631 40 1 1.5944 -1.4522 -3.5641 41 1 1.5070 -2.8111 -4.7109 42 1 2.3208 -3.4837 -2.4150 43 1 0.8409 -4.3408 -2.9204 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601532881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:57 Heat of formation + Delta-G solvation = -72.653848 kcal Electronic energy + Delta-G solvation = -28944.261431 eV Core-core repulsion = 24838.463563 eV Total energy + Delta-G solvation = -4105.797868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.120 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.35176 -39.54576 -38.49193 -37.50975 -35.97792 -34.51873 -33.16804 -32.36928 -31.20346 -30.91309 -27.96639 -27.35499 -25.16537 -23.57081 -23.42461 -22.33828 -21.84370 -20.26084 -18.94314 -18.11564 -17.51632 -17.44665 -16.95640 -16.44148 -16.02629 -15.76460 -14.91315 -14.87710 -14.69826 -14.47049 -14.40195 -13.98741 -13.88545 -13.86764 -13.71651 -13.45893 -13.31389 -12.87350 -12.41937 -12.31501 -12.22692 -11.95883 -11.93219 -11.71590 -11.50485 -11.33089 -11.13863 -10.92015 -10.85144 -10.79678 -10.64880 -10.44364 -9.93084 -9.46782 -9.36877 -9.21574 -8.91664 -8.51180 -7.36250 -6.10408 -4.12506 0.18086 0.45355 0.83883 2.72618 3.06393 3.26637 3.33930 3.37532 3.61567 3.75512 4.09104 4.33440 4.35188 4.43541 4.66114 4.70454 4.83239 4.94501 5.17084 5.24806 5.25963 5.30462 5.34372 5.41161 5.44912 5.57645 5.63615 5.66586 5.67376 5.74655 5.91184 5.92989 5.98749 6.11400 6.26418 6.38959 6.41509 6.47661 6.65001 7.17306 7.22236 7.70172 7.97109 8.07511 8.42983 8.95060 9.52488 11.00319 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.012947 B = 0.003688 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.063033 B = 7590.430888 C = 8568.656060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.060 3.940 3 C -0.180 4.180 4 C 0.158 3.842 5 F -0.132 7.132 6 C -0.185 4.185 7 C 0.011 3.989 8 C -0.697 4.697 9 S 2.696 3.304 10 O -0.959 6.959 11 O -0.955 6.955 12 N -0.992 5.992 13 C 0.113 3.887 14 C 0.046 3.954 15 N -0.531 5.531 16 C 0.194 3.806 17 C -0.510 4.510 18 H 0.065 0.935 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.272 1.272 25 C 0.040 3.960 26 C 0.130 3.870 27 H 0.106 0.894 28 H 0.117 0.883 29 H 0.087 0.913 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.029 0.971 36 H 0.098 0.902 37 H -0.010 1.010 38 H 0.032 0.968 39 H 0.262 0.738 40 H 0.026 0.974 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.253 -1.040 15.531 18.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.059 3.941 3 C -0.200 4.200 4 C 0.138 3.862 5 F -0.110 7.110 6 C -0.205 4.205 7 C -0.008 4.008 8 C -0.783 4.783 9 S 2.787 3.213 10 O -0.949 6.949 11 O -0.945 6.945 12 N -0.832 5.832 13 C -0.011 4.011 14 C -0.083 4.083 15 N -0.256 5.256 16 C 0.069 3.931 17 C -0.549 4.549 18 H 0.083 0.917 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.725 3.275 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.197 1.197 25 C -0.091 4.091 26 C 0.004 3.996 27 H 0.124 0.876 28 H 0.135 0.865 29 H 0.105 0.895 30 H 0.162 0.838 31 H 0.162 0.838 32 H 0.170 0.830 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.047 0.953 36 H 0.117 0.883 37 H 0.008 0.992 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.044 0.956 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.033 -1.930 15.972 18.450 hybrid contribution 0.061 2.101 -0.663 2.204 sum 9.093 0.171 15.309 17.807 Atomic orbital electron populations 1.22216 0.89721 1.07186 1.06127 1.19390 0.96353 0.90711 0.87687 1.21184 0.92326 0.99760 1.06681 1.17952 0.90283 0.81367 0.96590 1.91542 1.80237 1.46162 1.93066 1.21218 1.01304 0.91096 1.06877 1.20811 0.91760 0.98844 0.89366 1.31015 1.06364 1.20569 1.20335 1.01902 0.73153 0.73492 0.72798 1.93551 1.61532 1.53637 1.86179 1.93501 1.56761 1.86613 1.57618 1.57652 1.21253 1.77897 1.26375 1.22052 0.79827 1.00021 0.99241 1.22560 1.02165 0.93637 0.89975 1.61997 1.10371 1.49266 1.03946 1.19732 0.97508 0.90104 0.85769 1.21139 0.91980 1.30978 1.10772 0.91717 1.24989 0.97987 0.95438 0.96097 1.69953 1.34119 1.33303 1.16341 0.86505 0.85073 0.78437 0.77447 1.20750 1.21287 1.19690 1.22410 0.91547 0.97363 0.97734 1.21601 0.95647 0.98079 0.84239 0.87648 0.86548 0.89457 0.83759 0.83800 0.82968 0.89804 0.88996 0.95349 0.88344 0.99192 0.95029 0.92868 0.95599 0.90006 0.89980 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.16 8.05 36.01 0.29 -1.87 16 2 C 0.06 0.72 5.87 -104.64 -0.61 0.10 16 3 C -0.18 -2.04 9.66 -39.52 -0.38 -2.42 16 4 C 0.16 1.78 7.30 -39.42 -0.29 1.49 16 5 F -0.13 -1.50 17.27 2.25 0.04 -1.47 16 6 C -0.19 -1.90 10.03 -39.52 -0.40 -2.29 16 7 C 0.01 0.12 9.55 -39.59 -0.38 -0.25 16 8 C -0.70 -8.51 5.92 -39.58 -0.23 -8.74 16 9 S 2.70 35.28 5.11 -107.50 -0.55 34.73 16 10 O -0.96 -13.94 15.95 -57.17 -0.91 -14.85 16 11 O -0.95 -13.77 14.04 -57.17 -0.80 -14.57 16 12 N -0.99 -13.10 3.32 -112.97 -0.38 -13.47 16 13 C 0.11 1.53 5.61 -3.37 -0.02 1.51 16 14 C 0.05 0.77 4.97 -3.47 -0.02 0.75 16 15 N -0.53 -10.20 4.62 -235.47 -1.09 -11.28 16 16 C 0.19 4.68 4.72 -4.98 -0.02 4.66 16 17 C -0.51 -13.38 8.41 -34.44 -0.29 -13.67 16 18 H 0.06 1.66 7.13 -52.49 -0.37 1.29 16 19 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 20 N -0.90 -25.68 13.29 55.43 0.74 -24.94 16 21 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 C 0.04 0.63 5.62 -3.70 -0.02 0.61 16 26 C 0.13 1.70 6.51 -3.60 -0.02 1.68 16 27 H 0.11 1.21 4.01 -51.93 -0.21 1.00 16 28 H 0.12 1.33 4.06 -51.93 -0.21 1.12 16 29 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 30 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 31 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.15 1.39 7.33 -52.49 -0.38 1.01 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.09 1.07 4.75 -51.93 -0.25 0.82 16 35 H 0.03 0.46 6.00 -51.93 -0.31 0.15 16 36 H 0.10 1.76 6.67 -51.93 -0.35 1.41 16 37 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 38 H 0.03 0.82 7.97 -51.93 -0.41 0.41 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 1.27 7.99 -51.93 -0.41 0.86 16 42 H 0.08 0.91 7.38 -51.93 -0.38 0.53 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 350.43 15.07 5.28 5.28 Total: -1.00 -31.33 350.43 -10.57 -41.90 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.38 Total: 0.00 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -2.49 Total: -17.01 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.73 Total: -49.70 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -1.71 Total: -29.42 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 35.28 SS G_CDS: -0.55 Total: 34.73 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.33 -10.57 -41.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601532881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.755 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds