Wall clock time and date at job start Wed Apr 1 2020 00:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38216 * 119.98923 * 2 1 4 4 C 1.38434 * 119.97780 * 180.02562 * 3 2 1 5 5 F 1.35101 * 120.02743 * 179.97438 * 4 3 2 6 6 C 1.38476 * 119.94834 * 359.97438 * 4 3 2 7 7 C 1.38176 * 119.97554 * 0.02562 * 6 4 3 8 8 C 1.38218 * 119.98918 * 180.02562 * 2 1 3 9 9 S 1.76203 * 119.97361 * 0.02562 * 8 2 1 10 10 O 1.42099 * 106.40594 * 181.32953 * 9 8 2 11 11 O 1.42097 * 106.40326 * 314.25365 * 9 8 2 12 12 N 1.65604 * 107.21779 * 67.79213 * 9 8 2 13 13 C 1.47079 * 120.88292 * 264.00760 * 12 9 8 14 14 C 1.53694 * 108.28099 * 128.75349 * 13 12 9 15 15 N 1.46894 * 109.25762 * 54.08094 * 14 13 12 16 16 C 1.46897 * 110.99969 * 172.60995 * 15 14 13 17 17 C 1.50696 * 109.47059 * 294.30079 * 16 15 14 18 18 H 1.07997 * 120.00037 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00037 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99970 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00047 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46991 * 90.00035 * 21 19 17 23 23 H 1.48501 * 109.47181 * 209.99846 * 21 19 17 24 24 H 1.48497 * 109.47077 * 329.99993 * 21 19 17 25 25 C 1.46902 * 111.26922 * 296.75616 * 15 14 13 26 26 C 1.47079 * 120.88168 * 84.27997 * 12 9 8 27 27 H 1.08994 * 109.47378 * 95.80942 * 1 2 3 28 28 H 1.09001 * 109.46744 * 215.81245 * 1 2 3 29 29 H 1.08999 * 109.47104 * 335.80851 * 1 2 3 30 30 H 1.08007 * 120.01209 * 0.27915 * 3 2 1 31 31 H 1.08003 * 120.01682 * 180.02562 * 6 4 3 32 32 H 1.08002 * 119.99118 * 179.97438 * 7 6 4 33 33 H 1.09006 * 109.62460 * 248.52265 * 13 12 9 34 34 H 1.08999 * 109.62468 * 9.09755 * 13 12 9 35 35 H 1.09007 * 109.64548 * 294.07802 * 14 13 12 36 36 H 1.08998 * 109.41892 * 173.95172 * 14 13 12 37 37 H 1.09004 * 109.47101 * 54.30222 * 16 15 14 38 38 H 1.09000 * 109.47527 * 174.29832 * 16 15 14 39 39 H 0.96994 * 120.00376 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.49786 * 303.14773 * 25 15 14 41 41 H 1.08993 * 109.49771 * 183.06509 * 25 15 14 42 42 H 1.09001 * 109.63019 * 350.89505 * 26 12 9 43 43 H 1.08991 * 109.62941 * 111.47895 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1971 0.0000 4 6 3.5822 1.1968 -0.0005 5 9 4.2585 2.3664 -0.0011 6 6 4.2733 -0.0032 -0.0005 7 6 3.5806 -1.1987 -0.0005 8 6 2.1979 -1.1971 -0.0005 9 16 1.3159 -2.7225 -0.0019 10 8 2.2947 -3.7521 0.0294 11 8 0.2911 -2.5944 0.9741 12 7 0.5535 -2.8466 -1.4668 13 6 -0.8507 -2.4381 -1.6241 14 6 -0.9429 -1.4812 -2.8232 15 7 -0.3477 -2.1235 -4.0026 16 6 -0.5706 -1.3170 -5.2100 17 6 -2.0445 -1.2750 -5.5210 18 1 -2.7456 -1.7950 -4.8851 19 6 -2.4980 -0.5727 -6.6174 20 7 -1.6443 0.0610 -7.3915 21 14 -4.3251 -0.5200 -7.0025 22 1 -4.9427 0.6418 -6.3141 23 1 -4.5182 -0.3865 -8.4689 24 1 -4.9667 -1.7734 -6.5308 25 6 1.0836 -2.3854 -3.8013 26 6 1.2608 -3.3738 -2.6436 27 1 -0.3634 -0.1040 -1.0223 28 1 -0.3633 -0.8334 0.6013 29 1 -0.3633 0.9374 0.4211 30 1 1.6579 2.1325 0.0046 31 1 5.3533 -0.0047 -0.0005 32 1 4.1193 -2.1348 -0.0010 33 1 -1.4696 -3.3170 -1.8046 34 1 -1.1872 -1.9291 -0.7209 35 1 -0.4039 -0.5604 -2.5996 36 1 -1.9893 -1.2510 -3.0235 37 1 -0.2055 -0.3037 -5.0425 38 1 -0.0349 -1.7622 -6.0483 39 1 -1.9632 0.5548 -8.1631 40 1 1.5944 -1.4522 -3.5641 41 1 1.5070 -2.8111 -4.7109 42 1 2.3208 -3.4837 -2.4150 43 1 0.8409 -4.3408 -2.9204 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601532881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:55 Heat of formation + Delta-G solvation = -93.754248 kcal Electronic energy + Delta-G solvation = -28945.176413 eV Core-core repulsion = 24838.463563 eV Total energy + Delta-G solvation = -4106.712850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.120 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.22215 -40.42049 -39.78069 -38.58879 -37.06693 -36.04209 -34.29345 -33.99515 -32.12043 -32.05976 -29.66385 -28.25565 -26.77044 -24.67963 -24.46193 -23.58211 -23.18717 -21.53549 -19.99829 -19.14308 -18.48410 -18.45222 -18.37452 -17.87930 -16.90621 -16.83039 -16.69484 -16.03519 -15.76123 -15.71312 -15.57597 -15.42631 -15.01864 -14.82614 -14.71518 -14.49601 -14.31269 -14.05634 -13.82708 -13.53390 -13.48171 -13.28706 -13.05471 -12.90504 -12.72703 -12.64510 -12.56424 -12.33750 -12.22190 -12.19933 -11.98785 -11.86485 -11.52163 -11.24049 -10.58823 -10.35832 -10.13809 -10.03190 -8.94679 -8.17386 -6.26737 -0.80634 -0.47843 0.00247 1.44605 1.46000 1.57045 1.73279 2.15861 2.43135 2.60780 2.90925 3.12880 3.15969 3.29376 3.45489 3.61631 3.65281 3.91621 4.05202 4.14779 4.24897 4.30643 4.37779 4.39849 4.43207 4.45344 4.61260 4.66039 4.75641 4.83127 4.86845 4.88947 5.00639 5.06063 5.08298 5.10403 5.20197 5.28711 5.32130 5.52963 5.61836 5.68962 6.08419 6.35866 6.65456 6.90321 7.43460 8.93543 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.012947 B = 0.003688 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.063033 B = 7590.430888 C = 8568.656060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.047 3.953 3 C -0.188 4.188 4 C 0.147 3.853 5 F -0.134 7.134 6 C -0.181 4.181 7 C 0.006 3.994 8 C -0.706 4.706 9 S 2.712 3.288 10 O -0.972 6.972 11 O -0.969 6.969 12 N -0.993 5.993 13 C 0.121 3.879 14 C 0.046 3.954 15 N -0.537 5.537 16 C 0.209 3.791 17 C -0.519 4.519 18 H 0.069 0.931 19 C 0.003 3.997 20 N -0.936 5.936 21 Si 0.965 3.035 22 H -0.273 1.273 23 H -0.288 1.288 24 H -0.263 1.263 25 C 0.038 3.962 26 C 0.134 3.866 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.158 0.842 31 H 0.171 0.829 32 H 0.170 0.830 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.031 0.969 36 H 0.083 0.917 37 H -0.040 1.040 38 H 0.004 0.996 39 H 0.263 0.737 40 H 0.023 0.977 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.239 -1.499 16.831 19.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.046 3.954 3 C -0.208 4.208 4 C 0.128 3.872 5 F -0.112 7.112 6 C -0.201 4.201 7 C -0.013 4.013 8 C -0.794 4.794 9 S 2.804 3.196 10 O -0.962 6.962 11 O -0.959 6.959 12 N -0.832 5.832 13 C -0.004 4.004 14 C -0.083 4.083 15 N -0.262 5.262 16 C 0.083 3.917 17 C -0.557 4.557 18 H 0.087 0.913 19 C -0.195 4.195 20 N -0.577 5.577 21 Si 0.790 3.210 22 H -0.199 1.199 23 H -0.213 1.213 24 H -0.187 1.187 25 C -0.091 4.091 26 C 0.009 3.991 27 H 0.116 0.884 28 H 0.131 0.869 29 H 0.124 0.876 30 H 0.176 0.824 31 H 0.188 0.812 32 H 0.187 0.813 33 H 0.107 0.893 34 H 0.130 0.870 35 H 0.048 0.952 36 H 0.101 0.899 37 H -0.022 1.022 38 H 0.023 0.977 39 H 0.071 0.929 40 H 0.041 0.959 41 H 0.099 0.901 42 H 0.125 0.875 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.013 -2.421 17.299 19.656 hybrid contribution 0.160 2.283 -1.029 2.509 sum 9.173 -0.138 16.271 18.679 Atomic orbital electron populations 1.22220 0.89359 1.08123 1.05648 1.19539 0.96829 0.90907 0.88164 1.21398 0.92683 1.00234 1.06437 1.18153 0.90483 0.81725 0.96856 1.91537 1.80239 1.46351 1.93111 1.21523 1.02713 0.90345 1.05483 1.21093 0.91371 0.99900 0.88921 1.30903 1.07036 1.19951 1.21461 1.01333 0.72671 0.73380 0.72241 1.93531 1.61770 1.54608 1.86305 1.93483 1.57401 1.86934 1.58079 1.57634 1.21144 1.77951 1.26469 1.21991 0.80308 0.99608 0.98498 1.22577 1.00990 0.94648 0.90080 1.61900 1.12802 1.48169 1.03320 1.19357 0.96191 0.88892 0.87268 1.21485 0.93059 1.30484 1.10674 0.91328 1.25863 1.02519 0.95092 0.96018 1.70085 1.36263 1.34377 1.16971 0.85437 0.79614 0.78878 0.77024 1.19909 1.21341 1.18708 1.22495 0.89389 0.98076 0.99178 1.21623 0.97277 0.97215 0.83028 0.88371 0.86928 0.87591 0.82411 0.81158 0.81251 0.89281 0.86963 0.95159 0.89891 1.02186 0.97744 0.92871 0.95892 0.90056 0.87487 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.09 8.05 71.24 0.57 -3.52 16 2 C 0.05 1.06 5.87 -19.87 -0.12 0.95 16 3 C -0.19 -4.01 9.66 22.31 0.22 -3.79 16 4 C 0.15 3.10 7.30 22.37 0.16 3.26 16 5 F -0.13 -2.87 17.27 44.97 0.78 -2.09 16 6 C -0.18 -3.30 10.03 22.31 0.22 -3.08 16 7 C 0.01 0.12 9.55 22.26 0.21 0.34 16 8 C -0.71 -16.05 5.92 22.27 0.13 -15.92 16 9 S 2.71 66.15 5.11 -56.49 -0.29 65.86 16 10 O -0.97 -26.20 15.95 -128.00 -2.04 -28.24 16 11 O -0.97 -26.36 14.04 -128.00 -1.80 -28.16 16 12 N -0.99 -24.61 3.32 -511.33 -1.70 -26.31 16 13 C 0.12 3.10 5.61 86.50 0.49 3.59 16 14 C 0.05 1.53 4.97 86.54 0.43 1.96 16 15 N -0.54 -20.79 4.62 -898.89 -4.15 -24.95 16 16 C 0.21 10.44 4.72 85.56 0.40 10.84 16 17 C -0.52 -27.60 8.41 25.60 0.22 -27.39 16 18 H 0.07 3.52 7.13 -2.91 -0.02 3.50 16 19 C 0.00 0.16 5.46 84.65 0.46 0.62 16 20 N -0.94 -54.69 13.29 21.45 0.28 -54.40 16 21 Si 0.97 42.52 29.54 68.60 2.03 44.55 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 23 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 24 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 25 C 0.04 1.21 5.62 86.39 0.49 1.70 16 26 C 0.13 3.29 6.51 86.35 0.56 3.85 16 27 H 0.10 2.16 4.01 -2.39 -0.01 2.15 16 28 H 0.11 2.42 4.06 -2.39 -0.01 2.41 16 29 H 0.11 1.72 8.05 -2.39 -0.02 1.71 16 30 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 31 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.17 2.65 7.33 -2.91 -0.02 2.63 16 33 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.11 2.45 4.75 -2.39 -0.01 2.43 16 35 H 0.03 0.99 6.00 -2.38 -0.01 0.98 16 36 H 0.08 2.98 6.67 -2.39 -0.02 2.96 16 37 H -0.04 -2.17 8.12 -2.38 -0.02 -2.19 16 38 H 0.00 0.24 7.97 -2.39 -0.02 0.22 16 39 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 40 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 2.54 7.99 -2.39 -0.02 2.52 16 42 H 0.11 2.13 7.38 -2.39 -0.02 2.11 16 43 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -67.07 350.43 -1.40 -68.47 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.05 Total: 11.85 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: 4.45 Total: -26.58 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -5.57 Total: -105.66 kcal Atomic # 8 Polarization: -52.55 SS G_CDS: -3.84 Total: -56.39 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.78 Total: -2.09 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: 66.15 SS G_CDS: -0.29 Total: 65.86 kcal Total: -67.07 -1.40 -68.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601532881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.284 kcal (2) G-P(sol) polarization free energy of solvation -67.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds