Wall clock time and date at job start Wed Apr 1 2020 00:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38222 * 120.00781 * 2 1 4 4 C 1.38230 * 120.01866 * 180.02562 * 3 2 1 5 5 C 1.38265 * 120.05232 * 0.02562 * 4 3 2 6 6 S 1.76199 * 119.98387 * 180.02562 * 5 4 3 7 7 O 1.42098 * 106.40307 * 203.53950 * 6 5 4 8 8 O 1.42098 * 106.40491 * 336.46072 * 6 5 4 9 9 N 1.65605 * 107.21961 * 90.00099 * 6 5 4 10 10 C 1.47074 * 120.87795 * 269.72474 * 9 6 5 11 11 C 1.53693 * 108.27651 * 128.75282 * 10 9 6 12 12 N 1.46899 * 109.26046 * 54.08187 * 11 10 9 13 13 C 1.46893 * 111.00416 * 172.60962 * 12 11 10 14 14 C 1.50709 * 109.46743 * 294.29913 * 13 12 11 15 15 H 1.07989 * 120.00194 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99439 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00583 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99624 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46918 * 89.99946 * 18 16 14 20 20 H 1.48499 * 109.47256 * 210.00161 * 18 16 14 21 21 H 1.48501 * 109.47234 * 330.00290 * 18 16 14 22 22 C 1.46908 * 111.26236 * 296.75617 * 12 11 10 23 23 C 1.47074 * 120.88077 * 89.99712 * 9 6 5 24 24 C 1.38170 * 120.02652 * 359.97438 * 5 4 3 25 25 C 1.38437 * 120.01443 * 180.02562 * 2 1 3 26 26 F 1.35097 * 120.02235 * 359.96128 * 25 2 1 27 27 H 1.09003 * 109.47307 * 269.97741 * 1 2 3 28 28 H 1.08997 * 109.46988 * 29.97716 * 1 2 3 29 29 H 1.08999 * 109.46853 * 149.97969 * 1 2 3 30 30 H 1.07993 * 119.99336 * 0.04208 * 3 2 1 31 31 H 1.07993 * 119.96947 * 180.27413 * 4 3 2 32 32 H 1.08999 * 109.62720 * 248.51918 * 10 9 6 33 33 H 1.09005 * 109.63345 * 9.09502 * 10 9 6 34 34 H 1.09000 * 109.64999 * 294.07387 * 11 10 9 35 35 H 1.09008 * 109.44075 * 173.95973 * 11 10 9 36 36 H 1.08999 * 109.47529 * 54.29824 * 13 12 11 37 37 H 1.08998 * 109.47555 * 174.29793 * 13 12 11 38 38 H 0.96997 * 120.00029 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.49205 * 303.14063 * 22 12 11 40 40 H 1.09002 * 109.48917 * 183.06028 * 22 12 11 41 41 H 1.09002 * 109.62950 * 350.90087 * 23 9 6 42 42 H 1.09003 * 109.62960 * 111.47922 * 23 9 6 43 43 H 1.08001 * 120.01158 * 180.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5807 1.1972 -0.0005 5 6 4.2733 0.0006 -0.0016 6 16 6.0353 0.0030 -0.0016 7 8 6.4383 -1.2457 -0.5471 8 8 6.4349 1.2537 -0.5449 9 7 6.5255 0.0022 1.5802 10 6 6.7530 1.2642 2.3005 11 6 5.9711 1.2122 3.6227 12 7 6.3479 -0.0005 4.3612 13 6 5.7577 -0.0026 5.7063 14 6 6.3527 1.1195 6.5176 15 1 7.0952 1.7688 6.0780 16 6 5.9496 1.3164 7.8214 17 7 5.0457 0.5253 8.3569 18 14 6.6876 2.7068 8.8273 19 1 5.8696 3.9336 8.6509 20 1 6.7042 2.3249 10.2622 21 1 8.0757 2.9672 8.3682 22 6 5.9744 -1.2130 3.6205 23 6 6.7507 -1.2604 2.3001 24 6 3.5843 -1.1971 -0.0016 25 6 2.1996 -1.1987 -0.0005 26 9 1.5248 -2.3691 -0.0003 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6584 2.1322 0.0007 31 1 4.1199 2.1328 0.0039 32 1 7.8171 1.3821 2.5053 33 1 6.3988 2.0996 1.6966 34 1 4.9012 1.1940 3.4153 35 1 6.2107 2.0915 4.2207 36 1 4.6793 0.1363 5.6301 37 1 5.9678 -0.9545 6.1939 38 1 4.7625 0.6636 9.2742 39 1 4.9045 -1.1974 3.4131 40 1 6.2170 -2.0926 4.2168 41 1 6.3948 -2.0949 1.6959 42 1 7.8146 -1.3804 2.5049 43 1 4.1256 -2.1317 -0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601534383.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:03 Heat of formation + Delta-G solvation = -82.096940 kcal Electronic energy + Delta-G solvation = -28428.522666 eV Core-core repulsion = 24322.315315 eV Total energy + Delta-G solvation = -4106.207351 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.120 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.20295 -39.44288 -38.41266 -37.39270 -35.95522 -34.46741 -33.45239 -32.35875 -31.01627 -30.79811 -27.88337 -27.70865 -25.13680 -23.48161 -23.28090 -22.46221 -21.80718 -20.26995 -19.11517 -18.33033 -17.45128 -17.08085 -16.41227 -16.36023 -16.01305 -15.72818 -15.62309 -14.87800 -14.49376 -14.43273 -14.24051 -14.15455 -13.85604 -13.78309 -13.62693 -13.50637 -12.93224 -12.59297 -12.53647 -12.40992 -12.29025 -12.23257 -12.06444 -11.86691 -11.82887 -11.30930 -11.11463 -11.05525 -10.85327 -10.79840 -10.64669 -10.42860 -9.91918 -9.54926 -9.34576 -9.12980 -8.89858 -8.49850 -7.34761 -6.08966 -4.10910 0.14687 0.44606 0.78702 2.71776 3.07920 3.27542 3.34607 3.38484 3.63335 3.81437 4.10483 4.28470 4.36512 4.39404 4.63099 4.69171 4.85383 4.87116 5.05744 5.15896 5.18377 5.26440 5.34513 5.41419 5.48007 5.59534 5.60091 5.61956 5.67106 5.71770 5.75099 5.84470 5.98576 6.12887 6.26833 6.41202 6.43905 6.45458 6.67545 7.19642 7.24859 7.72071 7.99276 8.09858 8.45247 8.96668 9.53931 11.01805 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.011975 B = 0.003538 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.712374 B = 7911.125814 C = 8958.096122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.066 4.066 3 C -0.114 4.114 4 C -0.024 4.024 5 C -0.657 4.657 6 S 2.693 3.307 7 O -0.956 6.956 8 O -0.953 6.953 9 N -0.992 5.992 10 C 0.124 3.876 11 C 0.050 3.950 12 N -0.532 5.532 13 C 0.194 3.806 14 C -0.510 4.510 15 H 0.065 0.935 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.272 1.272 22 C 0.040 3.960 23 C 0.127 3.873 24 C -0.048 4.048 25 C 0.076 3.924 26 F -0.133 7.133 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.024 0.976 35 H 0.097 0.903 36 H -0.010 1.010 37 H 0.032 0.968 38 H 0.262 0.738 39 H 0.025 0.975 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.085 -0.813 -18.080 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.067 4.067 3 C -0.133 4.133 4 C -0.043 4.043 5 C -0.742 4.742 6 S 2.782 3.218 7 O -0.946 6.946 8 O -0.944 6.944 9 N -0.832 5.832 10 C -0.001 4.001 11 C -0.080 4.080 12 N -0.257 5.257 13 C 0.069 3.931 14 C -0.548 4.548 15 H 0.083 0.917 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.725 3.275 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.197 1.197 22 C -0.090 4.090 23 C 0.002 3.998 24 C -0.068 4.068 25 C 0.056 3.944 26 F -0.112 7.112 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.042 0.958 35 H 0.115 0.885 36 H 0.008 0.992 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.182 -0.899 -18.588 19.318 hybrid contribution -1.557 0.412 1.024 1.908 sum -6.739 -0.487 -17.564 18.819 Atomic orbital electron populations 1.20885 0.89514 1.03878 1.03670 1.20296 0.97489 0.92121 0.96781 1.21096 0.94055 0.97480 1.00630 1.20994 0.94656 0.96904 0.91760 1.31145 1.28288 0.98448 1.16293 1.02063 0.73426 0.73602 0.72727 1.93572 1.80732 1.43952 1.76345 1.93576 1.80740 1.43691 1.76367 1.57695 1.81196 1.13558 1.30745 1.21835 1.02110 0.83065 0.93121 1.22425 0.95990 0.96240 0.93319 1.62002 1.60193 0.99501 1.04024 1.19728 0.92564 0.98203 0.82617 1.21147 1.23070 1.13878 0.96717 0.91726 1.24988 0.95156 0.96601 0.97781 1.69953 1.30989 1.38221 1.14594 0.86505 0.79654 0.82005 0.79288 1.20762 1.21281 1.19691 1.22407 0.96574 0.95830 0.94226 1.21636 1.01964 0.83340 0.92867 1.20835 0.92706 0.98382 0.94902 1.17517 0.89988 0.81305 1.05628 1.91509 1.80098 1.45530 1.94023 0.89781 0.90308 0.90652 0.83930 0.83475 0.89861 0.89687 0.95768 0.88471 0.99210 0.95040 0.92885 0.95643 0.90010 0.89773 0.89852 0.83072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.84 36.01 0.35 -0.57 16 2 C -0.07 -0.67 5.89 -104.55 -0.62 -1.29 16 3 C -0.11 -1.09 9.70 -39.59 -0.38 -1.47 16 4 C -0.02 -0.26 9.52 -39.57 -0.38 -0.64 16 5 C -0.66 -8.01 5.97 -39.60 -0.24 -8.24 16 6 S 2.69 35.73 5.70 -107.50 -0.61 35.12 16 7 O -0.96 -14.30 16.06 -57.17 -0.92 -15.22 16 8 O -0.95 -14.08 16.05 -57.17 -0.92 -15.00 16 9 N -0.99 -13.50 3.32 -112.98 -0.38 -13.87 16 10 C 0.12 1.73 6.56 -3.37 -0.02 1.71 16 11 C 0.05 0.87 5.47 -3.46 -0.02 0.85 16 12 N -0.53 -10.54 4.62 -235.46 -1.09 -11.62 16 13 C 0.19 4.78 4.72 -4.98 -0.02 4.75 16 14 C -0.51 -13.59 8.41 -34.44 -0.29 -13.88 16 15 H 0.06 1.69 7.13 -52.49 -0.37 1.31 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -25.92 13.29 55.43 0.74 -25.18 16 18 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 C 0.04 0.65 5.62 -3.70 -0.02 0.63 16 23 C 0.13 1.73 6.53 -3.61 -0.02 1.70 16 24 C -0.05 -0.59 9.50 -39.52 -0.38 -0.96 16 25 C 0.08 0.90 7.24 -39.42 -0.29 0.61 16 26 F -0.13 -1.60 16.48 2.25 0.04 -1.56 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 29 H 0.07 0.55 7.64 -51.93 -0.40 0.16 16 30 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.15 1.36 7.62 -52.49 -0.40 0.96 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.01 7.21 -51.93 -0.37 0.64 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.10 1.81 6.67 -51.92 -0.35 1.46 16 36 H -0.01 -0.26 8.12 -51.93 -0.42 -0.69 16 37 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 1.30 7.99 -51.93 -0.41 0.89 16 41 H 0.08 0.98 7.22 -51.93 -0.37 0.60 16 42 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.15 1.66 7.62 -52.49 -0.40 1.26 16 LS Contribution 367.15 15.07 5.53 5.53 Total: -1.00 -32.42 367.15 -11.05 -43.47 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -6.01 Total: -2.20 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -2.42 Total: -15.35 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.73 Total: -50.67 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -1.84 Total: -30.21 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 35.73 SS G_CDS: -0.61 Total: 35.12 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.42 -11.05 -43.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601534383.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.630 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds