Wall clock time and date at job start Wed Apr 1 2020 00:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38222 * 120.00781 * 2 1 4 4 C 1.38230 * 120.01866 * 180.02562 * 3 2 1 5 5 C 1.38265 * 120.05232 * 0.02562 * 4 3 2 6 6 S 1.76199 * 119.98387 * 180.02562 * 5 4 3 7 7 O 1.42098 * 106.40307 * 203.53950 * 6 5 4 8 8 O 1.42098 * 106.40491 * 336.46072 * 6 5 4 9 9 N 1.65605 * 107.21961 * 90.00099 * 6 5 4 10 10 C 1.47074 * 120.87795 * 269.72474 * 9 6 5 11 11 C 1.53693 * 108.27651 * 128.75282 * 10 9 6 12 12 N 1.46899 * 109.26046 * 54.08187 * 11 10 9 13 13 C 1.46893 * 111.00416 * 172.60962 * 12 11 10 14 14 C 1.50709 * 109.46743 * 294.29913 * 13 12 11 15 15 H 1.07989 * 120.00194 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99439 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00583 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99624 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46918 * 89.99946 * 18 16 14 20 20 H 1.48499 * 109.47256 * 210.00161 * 18 16 14 21 21 H 1.48501 * 109.47234 * 330.00290 * 18 16 14 22 22 C 1.46908 * 111.26236 * 296.75617 * 12 11 10 23 23 C 1.47074 * 120.88077 * 89.99712 * 9 6 5 24 24 C 1.38170 * 120.02652 * 359.97438 * 5 4 3 25 25 C 1.38437 * 120.01443 * 180.02562 * 2 1 3 26 26 F 1.35097 * 120.02235 * 359.96128 * 25 2 1 27 27 H 1.09003 * 109.47307 * 269.97741 * 1 2 3 28 28 H 1.08997 * 109.46988 * 29.97716 * 1 2 3 29 29 H 1.08999 * 109.46853 * 149.97969 * 1 2 3 30 30 H 1.07993 * 119.99336 * 0.04208 * 3 2 1 31 31 H 1.07993 * 119.96947 * 180.27413 * 4 3 2 32 32 H 1.08999 * 109.62720 * 248.51918 * 10 9 6 33 33 H 1.09005 * 109.63345 * 9.09502 * 10 9 6 34 34 H 1.09000 * 109.64999 * 294.07387 * 11 10 9 35 35 H 1.09008 * 109.44075 * 173.95973 * 11 10 9 36 36 H 1.08999 * 109.47529 * 54.29824 * 13 12 11 37 37 H 1.08998 * 109.47555 * 174.29793 * 13 12 11 38 38 H 0.96997 * 120.00029 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.49205 * 303.14063 * 22 12 11 40 40 H 1.09002 * 109.48917 * 183.06028 * 22 12 11 41 41 H 1.09002 * 109.62950 * 350.90087 * 23 9 6 42 42 H 1.09003 * 109.62960 * 111.47922 * 23 9 6 43 43 H 1.08001 * 120.01158 * 180.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5807 1.1972 -0.0005 5 6 4.2733 0.0006 -0.0016 6 16 6.0353 0.0030 -0.0016 7 8 6.4383 -1.2457 -0.5471 8 8 6.4349 1.2537 -0.5449 9 7 6.5255 0.0022 1.5802 10 6 6.7530 1.2642 2.3005 11 6 5.9711 1.2122 3.6227 12 7 6.3479 -0.0005 4.3612 13 6 5.7577 -0.0026 5.7063 14 6 6.3527 1.1195 6.5176 15 1 7.0952 1.7688 6.0780 16 6 5.9496 1.3164 7.8214 17 7 5.0457 0.5253 8.3569 18 14 6.6876 2.7068 8.8273 19 1 5.8696 3.9336 8.6509 20 1 6.7042 2.3249 10.2622 21 1 8.0757 2.9672 8.3682 22 6 5.9744 -1.2130 3.6205 23 6 6.7507 -1.2604 2.3001 24 6 3.5843 -1.1971 -0.0016 25 6 2.1996 -1.1987 -0.0005 26 9 1.5248 -2.3691 -0.0003 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6584 2.1322 0.0007 31 1 4.1199 2.1328 0.0039 32 1 7.8171 1.3821 2.5053 33 1 6.3988 2.0996 1.6966 34 1 4.9012 1.1940 3.4153 35 1 6.2107 2.0915 4.2207 36 1 4.6793 0.1363 5.6301 37 1 5.9678 -0.9545 6.1939 38 1 4.7625 0.6636 9.2742 39 1 4.9045 -1.1974 3.4131 40 1 6.2170 -2.0926 4.2168 41 1 6.3948 -2.0949 1.6959 42 1 7.8146 -1.3804 2.5049 43 1 4.1256 -2.1317 -0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601534383.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:02 Heat of formation + Delta-G solvation = -104.031622 kcal Electronic energy + Delta-G solvation = -28429.473825 eV Core-core repulsion = 24322.315315 eV Total energy + Delta-G solvation = -4107.158510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.120 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.09794 -40.25779 -39.77579 -38.50696 -37.07455 -36.03232 -34.27384 -34.21647 -32.09759 -31.80588 -29.65239 -28.44156 -26.78673 -24.71425 -24.18065 -23.64049 -23.21629 -21.56566 -20.15804 -19.39479 -18.56832 -18.46368 -17.96571 -17.22575 -16.90235 -16.83860 -16.69668 -16.48375 -15.94432 -15.67402 -15.54662 -15.31745 -15.06403 -14.87455 -14.54034 -14.44109 -14.09978 -13.72184 -13.60016 -13.53971 -13.34780 -13.34285 -13.26409 -13.24293 -12.91640 -12.65501 -12.62119 -12.57264 -12.29304 -12.23668 -12.05678 -11.95322 -11.54143 -11.25078 -10.59853 -10.36481 -10.12705 -9.97756 -8.98829 -8.18211 -6.27890 -0.84511 -0.46423 -0.05397 1.44156 1.45586 1.56861 1.72304 2.18703 2.42581 2.60943 2.91261 3.14826 3.21584 3.28226 3.51556 3.58250 3.63705 3.83204 4.04290 4.12666 4.25689 4.32921 4.34959 4.38975 4.45998 4.49807 4.62463 4.68513 4.74189 4.83350 4.86020 4.89460 5.02931 5.05341 5.07223 5.09226 5.10051 5.24761 5.28715 5.50846 5.63714 5.67841 6.06945 6.34102 6.63542 6.88888 7.42296 8.92863 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.011975 B = 0.003538 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.712374 B = 7911.125814 C = 8958.096122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.066 4.066 3 C -0.112 4.112 4 C -0.032 4.032 5 C -0.667 4.667 6 S 2.711 3.289 7 O -0.974 6.974 8 O -0.967 6.967 9 N -0.994 5.994 10 C 0.131 3.869 11 C 0.051 3.949 12 N -0.538 5.538 13 C 0.209 3.791 14 C -0.520 4.520 15 H 0.068 0.932 16 C 0.003 3.997 17 N -0.936 5.936 18 Si 0.967 3.033 19 H -0.273 1.273 20 H -0.287 1.287 21 H -0.263 1.263 22 C 0.039 3.961 23 C 0.132 3.868 24 C -0.062 4.062 25 C 0.055 3.945 26 F -0.139 7.139 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.074 0.926 30 H 0.177 0.823 31 H 0.164 0.836 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.021 0.979 35 H 0.082 0.918 36 H -0.040 1.040 37 H 0.004 0.996 38 H 0.263 0.737 39 H 0.022 0.978 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.131 0.795 -19.163 20.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.068 4.068 3 C -0.131 4.131 4 C -0.051 4.051 5 C -0.754 4.754 6 S 2.803 3.197 7 O -0.964 6.964 8 O -0.957 6.957 9 N -0.833 5.833 10 C 0.006 3.994 11 C -0.079 4.079 12 N -0.263 5.263 13 C 0.083 3.917 14 C -0.558 4.558 15 H 0.087 0.913 16 C -0.195 4.195 17 N -0.577 5.577 18 Si 0.792 3.208 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.187 1.187 22 C -0.091 4.091 23 C 0.007 3.993 24 C -0.082 4.082 25 C 0.035 3.965 26 F -0.118 7.118 27 H 0.106 0.894 28 H 0.122 0.878 29 H 0.093 0.907 30 H 0.194 0.806 31 H 0.181 0.819 32 H 0.107 0.893 33 H 0.129 0.871 34 H 0.039 0.961 35 H 0.101 0.899 36 H -0.023 1.023 37 H 0.023 0.977 38 H 0.072 0.928 39 H 0.040 0.960 40 H 0.099 0.901 41 H 0.124 0.876 42 H 0.109 0.891 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.195 0.707 -19.701 20.386 hybrid contribution -1.632 -0.120 1.311 2.097 sum -6.827 0.587 -18.390 19.625 Atomic orbital electron populations 1.20983 0.87588 1.05136 1.04242 1.20701 0.99029 0.91708 0.95316 1.21510 0.93712 0.98591 0.99244 1.21349 0.95572 0.97022 0.91154 1.30911 1.27288 0.99167 1.18025 1.01370 0.73508 0.72787 0.72083 1.93544 1.81523 1.44729 1.76651 1.93552 1.81427 1.44170 1.76589 1.57681 1.81487 1.13340 1.30775 1.21792 1.01914 0.84114 0.91616 1.22441 0.96446 0.94485 0.94543 1.61916 1.59815 1.01772 1.02788 1.19363 0.90777 0.96303 0.85299 1.21483 1.22918 1.14241 0.97194 0.91340 1.25883 0.95487 0.99100 0.99066 1.70087 1.32484 1.40132 1.14999 0.85413 0.79186 0.78878 0.77322 1.19830 1.21242 1.18718 1.22491 0.96924 0.94336 0.95367 1.21635 1.01985 0.84197 0.91523 1.20959 0.93173 0.98689 0.95411 1.17766 0.90154 0.81847 1.06762 1.91488 1.80132 1.45955 1.94198 0.89365 0.87840 0.90692 0.80592 0.81864 0.89312 0.87139 0.96066 0.89946 1.02282 0.97742 0.92825 0.95993 0.90061 0.87577 0.89079 0.82785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.58 9.84 71.24 0.70 -0.87 16 2 C -0.07 -1.24 5.89 -19.82 -0.12 -1.35 16 3 C -0.11 -1.85 9.70 22.26 0.22 -1.64 16 4 C -0.03 -0.62 9.52 22.27 0.21 -0.41 16 5 C -0.67 -15.43 5.97 22.26 0.13 -15.30 16 6 S 2.71 68.03 5.70 -56.49 -0.32 67.71 16 7 O -0.97 -28.03 16.06 -128.00 -2.06 -30.08 16 8 O -0.97 -26.72 16.05 -128.00 -2.05 -28.78 16 9 N -0.99 -25.57 3.32 -511.36 -1.70 -27.27 16 10 C 0.13 3.45 6.56 86.50 0.57 4.02 16 11 C 0.05 1.74 5.47 86.54 0.47 2.21 16 12 N -0.54 -21.52 4.62 -898.86 -4.15 -25.68 16 13 C 0.21 10.65 4.72 85.56 0.40 11.05 16 14 C -0.52 -28.10 8.41 25.60 0.22 -27.88 16 15 H 0.07 3.57 7.13 -2.92 -0.02 3.55 16 16 C 0.00 0.14 5.46 84.66 0.46 0.60 16 17 N -0.94 -55.11 13.29 21.45 0.28 -54.83 16 18 Si 0.97 42.80 29.54 68.60 2.03 44.82 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 20 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 22 C 0.04 1.27 5.62 86.38 0.49 1.76 16 23 C 0.13 3.42 6.53 86.35 0.56 3.99 16 24 C -0.06 -1.48 9.50 22.31 0.21 -1.26 16 25 C 0.05 1.26 7.24 22.37 0.16 1.42 16 26 F -0.14 -3.32 16.48 44.97 0.74 -2.58 16 27 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.10 0.81 8.09 -2.39 -0.02 0.79 16 29 H 0.07 0.98 7.64 -2.39 -0.02 0.96 16 30 H 0.18 1.65 8.06 -2.91 -0.02 1.62 16 31 H 0.16 2.59 7.62 -2.91 -0.02 2.57 16 32 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.11 2.37 7.21 -2.38 -0.02 2.35 16 34 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 3.06 6.67 -2.38 -0.02 3.05 16 36 H -0.04 -2.27 8.12 -2.39 -0.02 -2.29 16 37 H 0.00 0.25 7.97 -2.39 -0.02 0.23 16 38 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 39 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.08 2.64 7.99 -2.39 -0.02 2.62 16 41 H 0.11 2.32 7.22 -2.39 -0.02 2.30 16 42 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.15 3.37 7.62 -2.91 -0.02 3.35 16 Total: -1.00 -70.13 367.15 -1.52 -71.65 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 1.02 Total: 8.71 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: 4.69 Total: -23.67 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -5.57 Total: -107.78 kcal Atomic # 8 Polarization: -54.75 SS G_CDS: -4.11 Total: -58.86 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.74 Total: -2.58 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 68.03 SS G_CDS: -0.32 Total: 67.71 kcal Total: -70.13 -1.52 -71.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601534383.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.379 kcal (2) G-P(sol) polarization free energy of solvation -70.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds