Wall clock time and date at job start Wed Apr 1 2020 00:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38265 * 119.97233 * 2 1 4 4 C 1.38184 * 120.02105 * 179.97438 * 3 2 1 5 5 C 1.38473 * 119.97714 * 359.97438 * 4 3 2 6 6 F 1.35095 * 120.02747 * 179.97438 * 5 4 3 7 7 C 1.38444 * 119.94731 * 359.97438 * 5 4 3 8 8 C 1.38218 * 119.97375 * 359.74862 * 7 5 4 9 9 S 1.76204 * 119.98793 * 180.27682 * 8 7 5 10 10 O 1.42103 * 106.40016 * 1.10681 * 9 8 7 11 11 O 1.42099 * 106.40360 * 134.03021 * 9 8 7 12 12 N 1.65597 * 107.21576 * 247.57154 * 9 8 7 13 13 C 1.47075 * 120.87967 * 264.88086 * 12 9 8 14 14 C 1.53699 * 108.27462 * 128.75843 * 13 12 9 15 15 N 1.46896 * 109.26141 * 54.08293 * 14 13 12 16 16 C 1.46896 * 111.00594 * 172.60649 * 15 14 13 17 17 C 1.50699 * 109.47211 * 294.30549 * 16 15 14 18 18 H 1.08007 * 119.99654 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00033 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00024 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99839 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47179 * 60.00170 * 21 19 17 23 23 H 1.48505 * 109.47027 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47282 * 300.00085 * 21 19 17 25 25 C 1.46902 * 111.26625 * 296.76026 * 15 14 13 26 26 C 1.47079 * 120.88201 * 85.16302 * 12 9 8 27 27 H 1.09004 * 109.47191 * 96.26502 * 1 2 3 28 28 H 1.09005 * 109.47119 * 216.26651 * 1 2 3 29 29 H 1.09004 * 109.47209 * 336.26945 * 1 2 3 30 30 H 1.07998 * 119.99172 * 359.97438 * 3 2 1 31 31 H 1.07997 * 120.00755 * 180.02562 * 4 3 2 32 32 H 1.08003 * 120.01138 * 180.02562 * 7 5 4 33 33 H 1.09000 * 109.63475 * 248.52624 * 13 12 9 34 34 H 1.08995 * 109.62992 * 9.10983 * 13 12 9 35 35 H 1.08998 * 109.64891 * 294.07732 * 14 13 12 36 36 H 1.08998 * 109.44328 * 173.96427 * 14 13 12 37 37 H 1.09000 * 109.46913 * 54.30259 * 16 15 14 38 38 H 1.08997 * 109.47289 * 174.30077 * 16 15 14 39 39 H 0.96999 * 120.00366 * 180.02562 * 20 19 17 40 40 H 1.08996 * 109.49384 * 303.13759 * 25 15 14 41 41 H 1.09001 * 109.49189 * 183.05911 * 25 15 14 42 42 H 1.09002 * 109.62957 * 350.89839 * 26 12 9 43 43 H 1.09003 * 109.63127 * 111.47715 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1977 0.0000 4 6 3.5796 1.1989 0.0005 5 6 4.2725 0.0000 0.0016 6 9 5.6234 0.0000 0.0016 7 6 3.5797 -1.1986 0.0027 8 6 2.1975 -1.1973 0.0079 9 16 1.3154 -2.7227 0.0167 10 8 2.2946 -3.7522 0.0429 11 8 0.2981 -2.5923 1.0002 12 7 0.5421 -2.8500 -1.4421 13 6 -0.8573 -2.4239 -1.5943 14 6 -0.9443 -1.4770 -2.8018 15 7 -0.3655 -2.1384 -3.9789 16 6 -0.5851 -1.3403 -5.1924 17 6 -2.0603 -1.2811 -5.4945 18 1 -2.7643 -1.7862 -4.8497 19 6 -2.5113 -0.5821 -6.5941 20 7 -1.6542 0.0333 -7.3790 21 14 -4.3399 -0.5092 -6.9689 22 1 -5.0545 0.1172 -5.8278 23 1 -4.5621 0.2987 -8.1950 24 1 -4.8568 -1.8849 -7.1816 25 6 1.0634 -2.4180 -3.7841 26 6 1.2346 -3.3978 -2.6184 27 1 -0.3634 -0.1121 -1.0216 28 1 -0.3634 -0.8286 0.6079 29 1 -0.3634 0.9408 0.4136 30 1 1.6572 2.1327 -0.0004 31 1 4.1189 2.1346 0.0010 32 1 4.1191 -2.1343 0.0039 33 1 -1.4894 -3.2958 -1.7626 34 1 -1.1811 -1.9019 -0.6939 35 1 -0.3915 -0.5617 -2.5904 36 1 -1.9886 -1.2340 -2.9979 37 1 -0.2053 -0.3306 -5.0369 38 1 -0.0609 -1.8007 -6.0299 39 1 -1.9714 0.5254 -8.1523 40 1 1.5884 -1.4897 -3.5590 41 1 1.4751 -2.8580 -4.6924 42 1 2.2945 -3.5201 -2.3953 43 1 0.7998 -4.3616 -2.8833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601535036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:05 Heat of formation + Delta-G solvation = -71.097394 kcal Electronic energy + Delta-G solvation = -28981.634045 eV Core-core repulsion = 24875.903671 eV Total energy + Delta-G solvation = -4105.730375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.120 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.16755 -39.56334 -38.50244 -37.52176 -35.99946 -34.52723 -32.87626 -32.37090 -31.76298 -30.88574 -27.95491 -26.91127 -25.16483 -23.96421 -23.43016 -22.18989 -21.84909 -20.27538 -19.10388 -18.34312 -17.57204 -17.00657 -16.46267 -16.20737 -15.91029 -15.77169 -15.69986 -14.90191 -14.72171 -14.48172 -14.38190 -14.21023 -13.92578 -13.83151 -13.65601 -13.52985 -12.89877 -12.57805 -12.41656 -12.32632 -12.20246 -12.02227 -11.92465 -11.84265 -11.70023 -11.32961 -11.12958 -10.88724 -10.82482 -10.77986 -10.62855 -10.45801 -9.94827 -9.78136 -9.38811 -8.95537 -8.88335 -8.50979 -7.36584 -6.10582 -4.12817 0.15936 0.44601 0.79152 2.72009 3.05838 3.28076 3.33187 3.35453 3.56451 3.86642 4.15141 4.34701 4.39212 4.49304 4.51558 4.65735 4.82116 4.88502 5.12440 5.24523 5.27518 5.30144 5.34726 5.44682 5.49982 5.53779 5.57369 5.63269 5.71313 5.74368 5.92990 5.94978 5.99651 6.10869 6.25978 6.38373 6.41959 6.48437 6.64030 7.17015 7.21828 7.69522 7.96856 8.07242 8.42625 8.94407 9.52124 11.00074 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.014456 B = 0.003540 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.472530 B = 7908.615048 C = 8498.345769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.020 3.980 3 C -0.114 4.114 4 C -0.095 4.095 5 C 0.069 3.931 6 F -0.136 7.136 7 C -0.052 4.052 8 C -0.657 4.657 9 S 2.695 3.305 10 O -0.957 6.957 11 O -0.952 6.952 12 N -0.991 5.991 13 C 0.113 3.887 14 C 0.046 3.954 15 N -0.531 5.531 16 C 0.194 3.806 17 C -0.511 4.511 18 H 0.064 0.936 19 C 0.057 3.943 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.040 3.960 26 C 0.129 3.871 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.154 0.846 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.029 0.971 36 H 0.099 0.901 37 H -0.010 1.010 38 H 0.032 0.968 39 H 0.262 0.738 40 H 0.026 0.974 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.381 0.328 15.461 17.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.019 3.981 3 C -0.133 4.133 4 C -0.114 4.114 5 C 0.049 3.951 6 F -0.115 7.115 7 C -0.072 4.072 8 C -0.742 4.742 9 S 2.784 3.216 10 O -0.947 6.947 11 O -0.942 6.942 12 N -0.831 5.831 13 C -0.012 4.012 14 C -0.083 4.083 15 N -0.256 5.256 16 C 0.069 3.931 17 C -0.550 4.550 18 H 0.082 0.918 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.726 3.274 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.201 1.201 25 C -0.090 4.090 26 C 0.004 3.996 27 H 0.122 0.878 28 H 0.131 0.869 29 H 0.105 0.895 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.172 0.828 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.047 0.953 36 H 0.117 0.883 37 H 0.008 0.992 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.192 -0.600 15.907 17.903 hybrid contribution 0.206 1.826 -0.661 1.952 sum 8.399 1.225 15.246 17.449 Atomic orbital electron populations 1.22197 0.89946 1.06975 1.05998 1.19647 0.96537 0.91539 0.90378 1.21119 0.93168 0.98443 1.00581 1.21449 0.95180 0.97388 0.97372 1.17652 0.77175 0.94593 1.05715 1.91520 1.28459 1.97377 1.94148 1.20878 0.92709 0.98493 0.95119 1.30932 1.05053 1.20970 1.17275 1.02011 0.73180 0.73461 0.72906 1.93559 1.61466 1.53509 1.86157 1.93513 1.57039 1.86544 1.57124 1.57644 1.21763 1.76909 1.26743 1.22080 0.79951 0.99911 0.99275 1.22564 1.02241 0.93597 0.89940 1.61995 1.11034 1.48693 1.03872 1.19726 0.97475 0.90224 0.85646 1.21103 0.91833 1.31618 1.10407 0.91770 1.24982 0.97975 0.95442 0.96069 1.69941 1.34124 1.33803 1.15844 0.86561 0.85077 0.78148 0.77617 1.20244 1.21406 1.20115 1.22408 0.91521 0.97420 0.97694 1.21620 0.95979 0.97876 0.84171 0.87781 0.86885 0.89523 0.83942 0.83961 0.82793 0.89766 0.88933 0.95288 0.88323 0.99178 0.95038 0.92808 0.95592 0.89972 0.89932 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.09 8.00 36.00 0.29 -1.80 16 2 C 0.02 0.24 5.87 -104.62 -0.61 -0.38 16 3 C -0.11 -1.15 9.67 -39.59 -0.38 -1.54 16 4 C -0.09 -0.95 10.03 -39.51 -0.40 -1.34 16 5 C 0.07 0.80 7.30 -39.42 -0.29 0.51 16 6 F -0.14 -1.61 17.27 2.25 0.04 -1.57 16 7 C -0.05 -0.63 9.53 -39.51 -0.38 -1.01 16 8 C -0.66 -8.23 5.91 -39.59 -0.23 -8.47 16 9 S 2.69 36.03 5.12 -107.50 -0.55 35.48 16 10 O -0.96 -14.39 15.92 -57.17 -0.91 -15.30 16 11 O -0.95 -13.83 14.12 -57.17 -0.81 -14.64 16 12 N -0.99 -13.21 3.32 -112.97 -0.37 -13.59 16 13 C 0.11 1.52 5.60 -3.37 -0.02 1.50 16 14 C 0.05 0.76 4.93 -3.46 -0.02 0.75 16 15 N -0.53 -10.19 4.62 -235.47 -1.09 -11.28 16 16 C 0.19 4.68 4.72 -4.98 -0.02 4.65 16 17 C -0.51 -13.36 8.41 -34.44 -0.29 -13.65 16 18 H 0.06 1.64 7.13 -52.48 -0.37 1.26 16 19 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -25.58 13.29 55.43 0.74 -24.84 16 21 Si 0.90 20.64 29.54 -169.99 -5.02 15.61 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 25 C 0.04 0.64 5.62 -3.70 -0.02 0.62 16 26 C 0.13 1.72 6.51 -3.60 -0.02 1.70 16 27 H 0.10 1.17 3.91 -51.93 -0.20 0.96 16 28 H 0.11 1.28 4.05 -51.93 -0.21 1.07 16 29 H 0.09 0.73 8.04 -51.93 -0.42 0.31 16 30 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 31 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 32 H 0.15 1.71 7.33 -52.48 -0.38 1.32 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.07 4.65 -51.93 -0.24 0.83 16 35 H 0.03 0.47 6.01 -51.93 -0.31 0.16 16 36 H 0.10 1.75 6.67 -51.93 -0.35 1.41 16 37 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 38 H 0.03 0.82 7.97 -51.93 -0.41 0.41 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 1.29 7.99 -51.93 -0.41 0.87 16 42 H 0.08 0.96 7.36 -51.93 -0.38 0.57 16 43 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 350.16 15.07 5.28 5.28 Total: -1.00 -31.32 350.16 -10.56 -41.88 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.37 Total: 0.00 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -2.49 Total: -17.03 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.73 Total: -49.70 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -1.72 Total: -29.94 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 36.03 SS G_CDS: -0.55 Total: 35.48 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.32 -10.56 -41.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601535036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.217 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds