Wall clock time and date at job start Wed Apr 1 2020 00:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38265 * 119.97233 * 2 1 4 4 C 1.38184 * 120.02105 * 179.97438 * 3 2 1 5 5 C 1.38473 * 119.97714 * 359.97438 * 4 3 2 6 6 F 1.35095 * 120.02747 * 179.97438 * 5 4 3 7 7 C 1.38444 * 119.94731 * 359.97438 * 5 4 3 8 8 C 1.38218 * 119.97375 * 359.74862 * 7 5 4 9 9 S 1.76204 * 119.98793 * 180.27682 * 8 7 5 10 10 O 1.42103 * 106.40016 * 1.10681 * 9 8 7 11 11 O 1.42099 * 106.40360 * 134.03021 * 9 8 7 12 12 N 1.65597 * 107.21576 * 247.57154 * 9 8 7 13 13 C 1.47075 * 120.87967 * 264.88086 * 12 9 8 14 14 C 1.53699 * 108.27462 * 128.75843 * 13 12 9 15 15 N 1.46896 * 109.26141 * 54.08293 * 14 13 12 16 16 C 1.46896 * 111.00594 * 172.60649 * 15 14 13 17 17 C 1.50699 * 109.47211 * 294.30549 * 16 15 14 18 18 H 1.08007 * 119.99654 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00033 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00024 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99839 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47179 * 60.00170 * 21 19 17 23 23 H 1.48505 * 109.47027 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47282 * 300.00085 * 21 19 17 25 25 C 1.46902 * 111.26625 * 296.76026 * 15 14 13 26 26 C 1.47079 * 120.88201 * 85.16302 * 12 9 8 27 27 H 1.09004 * 109.47191 * 96.26502 * 1 2 3 28 28 H 1.09005 * 109.47119 * 216.26651 * 1 2 3 29 29 H 1.09004 * 109.47209 * 336.26945 * 1 2 3 30 30 H 1.07998 * 119.99172 * 359.97438 * 3 2 1 31 31 H 1.07997 * 120.00755 * 180.02562 * 4 3 2 32 32 H 1.08003 * 120.01138 * 180.02562 * 7 5 4 33 33 H 1.09000 * 109.63475 * 248.52624 * 13 12 9 34 34 H 1.08995 * 109.62992 * 9.10983 * 13 12 9 35 35 H 1.08998 * 109.64891 * 294.07732 * 14 13 12 36 36 H 1.08998 * 109.44328 * 173.96427 * 14 13 12 37 37 H 1.09000 * 109.46913 * 54.30259 * 16 15 14 38 38 H 1.08997 * 109.47289 * 174.30077 * 16 15 14 39 39 H 0.96999 * 120.00366 * 180.02562 * 20 19 17 40 40 H 1.08996 * 109.49384 * 303.13759 * 25 15 14 41 41 H 1.09001 * 109.49189 * 183.05911 * 25 15 14 42 42 H 1.09002 * 109.62957 * 350.89839 * 26 12 9 43 43 H 1.09003 * 109.63127 * 111.47715 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1977 0.0000 4 6 3.5796 1.1989 0.0005 5 6 4.2725 0.0000 0.0016 6 9 5.6234 0.0000 0.0016 7 6 3.5797 -1.1986 0.0027 8 6 2.1975 -1.1973 0.0079 9 16 1.3154 -2.7227 0.0167 10 8 2.2946 -3.7522 0.0429 11 8 0.2981 -2.5923 1.0002 12 7 0.5421 -2.8500 -1.4421 13 6 -0.8573 -2.4239 -1.5943 14 6 -0.9443 -1.4770 -2.8018 15 7 -0.3655 -2.1384 -3.9789 16 6 -0.5851 -1.3403 -5.1924 17 6 -2.0603 -1.2811 -5.4945 18 1 -2.7643 -1.7862 -4.8497 19 6 -2.5113 -0.5821 -6.5941 20 7 -1.6542 0.0333 -7.3790 21 14 -4.3399 -0.5092 -6.9689 22 1 -5.0545 0.1172 -5.8278 23 1 -4.5621 0.2987 -8.1950 24 1 -4.8568 -1.8849 -7.1816 25 6 1.0634 -2.4180 -3.7841 26 6 1.2346 -3.3978 -2.6184 27 1 -0.3634 -0.1121 -1.0216 28 1 -0.3634 -0.8286 0.6079 29 1 -0.3634 0.9408 0.4136 30 1 1.6572 2.1327 -0.0004 31 1 4.1189 2.1346 0.0010 32 1 4.1191 -2.1343 0.0039 33 1 -1.4894 -3.2958 -1.7626 34 1 -1.1811 -1.9019 -0.6939 35 1 -0.3915 -0.5617 -2.5904 36 1 -1.9886 -1.2340 -2.9979 37 1 -0.2053 -0.3306 -5.0369 38 1 -0.0609 -1.8007 -6.0299 39 1 -1.9714 0.5254 -8.1523 40 1 1.5884 -1.4897 -3.5590 41 1 1.4751 -2.8580 -4.6924 42 1 2.2945 -3.5201 -2.3953 43 1 0.7998 -4.3616 -2.8833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601535036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:03 Heat of formation + Delta-G solvation = -92.267572 kcal Electronic energy + Delta-G solvation = -28982.552053 eV Core-core repulsion = 24875.903671 eV Total energy + Delta-G solvation = -4106.648382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.120 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.05506 -40.43268 -39.79440 -38.62713 -37.11553 -36.05355 -34.28030 -33.72218 -32.61075 -32.08345 -29.66428 -27.80010 -26.76198 -24.83748 -24.68844 -23.59136 -23.03404 -21.55557 -20.13511 -19.39344 -18.64618 -18.44907 -17.93618 -17.08946 -16.86971 -16.77969 -16.69352 -16.62287 -16.00900 -15.75685 -15.59714 -15.43684 -14.99109 -14.96904 -14.69758 -14.61772 -14.12781 -13.84957 -13.55660 -13.54001 -13.42043 -13.30832 -12.99763 -12.93742 -12.78198 -12.68460 -12.66616 -12.54890 -12.22138 -12.18743 -11.98454 -11.72228 -11.52875 -11.25854 -10.64726 -10.57053 -10.14270 -9.77218 -8.94561 -8.16395 -6.25885 -0.85031 -0.46264 -0.06669 1.46110 1.48281 1.55765 1.70967 2.16624 2.43868 2.54347 2.95165 3.16686 3.23604 3.28793 3.52285 3.62018 3.64836 3.75170 4.04062 4.12613 4.21445 4.31055 4.32701 4.37615 4.42802 4.49958 4.66316 4.68449 4.73839 4.76266 4.87836 4.91910 5.01227 5.07027 5.08464 5.14801 5.21007 5.28781 5.32763 5.51331 5.64285 5.69360 6.08841 6.36364 6.65116 6.90762 7.44261 8.94278 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.014456 B = 0.003540 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.472530 B = 7908.615048 C = 8498.345769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.009 3.991 3 C -0.115 4.115 4 C -0.089 4.089 5 C 0.055 3.945 6 F -0.140 7.140 7 C -0.065 4.065 8 C -0.668 4.668 9 S 2.709 3.291 10 O -0.975 6.975 11 O -0.964 6.964 12 N -0.991 5.991 13 C 0.120 3.880 14 C 0.047 3.953 15 N -0.537 5.537 16 C 0.210 3.790 17 C -0.520 4.520 18 H 0.069 0.931 19 C 0.004 3.996 20 N -0.936 5.936 21 Si 0.965 3.035 22 H -0.264 1.264 23 H -0.289 1.289 24 H -0.270 1.270 25 C 0.039 3.961 26 C 0.133 3.867 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.172 0.828 31 H 0.171 0.829 32 H 0.157 0.843 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.033 0.967 36 H 0.084 0.916 37 H -0.038 1.038 38 H 0.003 0.997 39 H 0.263 0.737 40 H 0.023 0.977 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.735 0.907 16.771 18.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.007 3.993 3 C -0.133 4.133 4 C -0.107 4.107 5 C 0.035 3.965 6 F -0.119 7.119 7 C -0.085 4.085 8 C -0.755 4.755 9 S 2.801 3.199 10 O -0.966 6.966 11 O -0.954 6.954 12 N -0.830 5.830 13 C -0.005 4.005 14 C -0.083 4.083 15 N -0.262 5.262 16 C 0.083 3.917 17 C -0.558 4.558 18 H 0.087 0.913 19 C -0.194 4.194 20 N -0.576 5.576 21 Si 0.790 3.210 22 H -0.189 1.189 23 H -0.215 1.215 24 H -0.195 1.195 25 C -0.091 4.091 26 C 0.008 3.992 27 H 0.115 0.885 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.190 0.810 31 H 0.189 0.811 32 H 0.174 0.826 33 H 0.107 0.893 34 H 0.132 0.868 35 H 0.051 0.949 36 H 0.103 0.897 37 H -0.020 1.020 38 H 0.021 0.979 39 H 0.071 0.929 40 H 0.042 0.958 41 H 0.099 0.901 42 H 0.121 0.879 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.539 -0.058 17.246 18.822 hybrid contribution 0.491 1.692 -1.031 2.041 sum 8.030 1.634 16.215 18.168 Atomic orbital electron populations 1.22212 0.89433 1.08126 1.05487 1.19912 0.97137 0.91872 0.90339 1.21499 0.93360 0.99046 0.99394 1.21816 0.95372 0.97932 0.95607 1.17843 0.77139 0.95140 1.06343 1.91509 1.28735 1.97418 1.94253 1.20987 0.92786 0.99109 0.95601 1.30720 1.05142 1.20704 1.18911 1.01432 0.72671 0.73367 0.72432 1.93531 1.61878 1.54795 1.86358 1.93496 1.57563 1.86865 1.57521 1.57611 1.21736 1.76990 1.26698 1.22043 0.80249 0.99594 0.98629 1.22585 1.01163 0.94582 0.89945 1.61894 1.13301 1.47747 1.03289 1.19352 0.96185 0.89027 0.87100 1.21454 0.92894 1.31130 1.10347 0.91313 1.25853 1.02506 0.95094 0.95960 1.70076 1.36253 1.34862 1.16447 0.85497 0.79645 0.78273 0.77567 1.18913 1.21465 1.19539 1.22476 0.89513 0.98051 0.99011 1.21622 0.97391 0.97146 0.83063 0.88506 0.87528 0.87096 0.81029 0.81123 0.82564 0.89267 0.86773 0.94887 0.89745 1.02008 0.97859 0.92865 0.95848 0.90102 0.87905 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.80 8.00 71.24 0.57 -3.23 16 2 C 0.01 0.19 5.87 -19.86 -0.12 0.08 16 3 C -0.11 -1.99 9.67 22.26 0.22 -1.78 16 4 C -0.09 -1.55 10.03 22.31 0.22 -1.32 16 5 C 0.06 1.21 7.30 22.37 0.16 1.37 16 6 F -0.14 -3.16 17.27 44.97 0.78 -2.39 16 7 C -0.06 -1.51 9.53 22.31 0.21 -1.30 16 8 C -0.67 -15.92 5.91 22.26 0.13 -15.79 16 9 S 2.71 69.33 5.12 -56.49 -0.29 69.04 16 10 O -0.98 -28.43 15.92 -128.00 -2.04 -30.46 16 11 O -0.96 -26.73 14.12 -128.00 -1.81 -28.54 16 12 N -0.99 -25.20 3.32 -511.34 -1.70 -26.89 16 13 C 0.12 3.06 5.60 86.51 0.48 3.55 16 14 C 0.05 1.52 4.93 86.54 0.43 1.95 16 15 N -0.54 -20.77 4.62 -898.90 -4.15 -24.92 16 16 C 0.21 10.40 4.72 85.56 0.40 10.80 16 17 C -0.52 -27.47 8.41 25.60 0.22 -27.26 16 18 H 0.07 3.49 7.13 -2.91 -0.02 3.47 16 19 C 0.00 0.21 5.46 84.66 0.46 0.67 16 20 N -0.94 -54.30 13.29 21.45 0.28 -54.01 16 21 Si 0.97 42.17 29.54 68.60 2.03 44.19 16 22 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 23 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 25 C 0.04 1.26 5.62 86.38 0.49 1.74 16 26 C 0.13 3.40 6.51 86.35 0.56 3.97 16 27 H 0.10 2.02 3.91 -2.39 -0.01 2.01 16 28 H 0.11 2.22 4.05 -2.38 -0.01 2.21 16 29 H 0.11 1.55 8.04 -2.39 -0.02 1.53 16 30 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 31 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 32 H 0.16 3.42 7.33 -2.91 -0.02 3.40 16 33 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.11 2.45 4.65 -2.39 -0.01 2.44 16 35 H 0.03 1.06 6.01 -2.39 -0.01 1.04 16 36 H 0.08 2.98 6.67 -2.39 -0.02 2.97 16 37 H -0.04 -2.05 8.12 -2.39 -0.02 -2.07 16 38 H 0.00 0.18 7.97 -2.39 -0.02 0.16 16 39 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.08 2.57 7.99 -2.39 -0.02 2.55 16 42 H 0.10 2.24 7.36 -2.39 -0.02 2.22 16 43 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -67.41 350.16 -1.41 -68.82 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 1.05 Total: 11.71 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 4.44 Total: -26.56 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -5.56 Total: -105.83 kcal Atomic # 8 Polarization: -55.15 SS G_CDS: -3.84 Total: -59.00 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.78 Total: -2.39 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 69.33 SS G_CDS: -0.29 Total: 69.04 kcal Total: -67.41 -1.41 -68.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601535036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.447 kcal (2) G-P(sol) polarization free energy of solvation -67.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds