Wall clock time and date at job start Wed Apr 1 2020 00:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99580 * 2 1 4 4 H 1.48503 * 109.47155 * 240.00189 * 3 2 1 5 5 H 1.48497 * 109.47539 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46776 * 120.00571 * 3 2 1 7 7 C 1.37881 * 120.00331 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99930 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99732 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97905 * 125.00102 * 10 9 7 12 12 C 1.35242 * 107.85628 * 180.24975 * 11 10 9 13 13 C 1.40397 * 107.86857 * 359.64252 * 12 11 10 14 14 N 1.40202 * 125.97193 * 180.14808 * 13 12 11 15 15 C 1.34780 * 119.99972 * 0.27437 * 14 13 12 16 16 O 1.21596 * 119.99653 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00247 * 180.02562 * 15 14 13 18 18 C 1.46498 * 120.00156 * 180.02562 * 17 15 14 19 19 H 1.08991 * 109.38450 * 35.20573 * 18 17 15 20 20 C 1.52586 * 109.38672 * 155.00157 * 18 17 15 21 21 C 1.52585 * 110.64376 * 190.14187 * 20 18 17 22 22 C 1.53037 * 109.98786 * 290.01328 * 21 20 18 23 23 S 1.81668 * 108.99962 * 63.64540 * 22 21 20 24 24 O 1.42103 * 108.66073 * 60.03079 * 23 22 21 25 25 O 1.42094 * 108.66238 * 191.27711 * 23 22 21 26 26 C 1.53037 * 109.38188 * 275.52407 * 18 17 15 27 27 N 1.31203 * 108.05748 * 0.35865 * 13 12 11 28 28 H 0.96994 * 120.00521 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47490 * 60.00208 * 9 7 2 30 30 H 1.08998 * 109.47467 * 300.00755 * 9 7 2 31 31 H 1.08002 * 126.06683 * 359.97438 * 11 10 9 32 32 H 1.08005 * 126.06509 * 179.74504 * 12 11 10 33 33 H 0.96997 * 119.99910 * 180.28092 * 14 13 12 34 34 H 0.96997 * 119.99634 * 0.02562 * 17 15 14 35 35 H 1.09005 * 109.23728 * 310.44090 * 20 18 17 36 36 H 1.08995 * 109.24298 * 69.87550 * 20 18 17 37 37 H 1.09006 * 109.38330 * 50.17253 * 21 20 18 38 38 H 1.08998 * 109.38617 * 169.85038 * 21 20 18 39 39 H 1.08999 * 109.54611 * 183.50464 * 22 21 20 40 40 H 1.09001 * 109.54537 * 303.69409 * 22 21 20 41 41 H 1.09001 * 109.55108 * 296.04601 * 26 18 17 42 42 H 1.09004 * 109.55378 * 56.33835 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.2422 -4.6224 0.8941 12 6 3.2644 -5.4396 0.5527 13 6 3.8694 -4.9141 -0.6000 14 7 4.9659 -5.4647 -1.2784 15 6 5.5304 -6.6048 -0.8335 16 8 5.0884 -7.1561 0.1561 17 7 6.5848 -7.1339 -1.4853 18 6 7.1980 -8.3734 -1.0019 19 1 6.4248 -9.0244 -0.5940 20 6 7.8947 -9.0795 -2.1614 21 6 8.3262 -10.4852 -1.7540 22 6 9.4756 -10.4084 -0.7466 23 16 8.8835 -9.5936 0.7653 24 8 7.8130 -10.3573 1.3039 25 8 10.0028 -9.2896 1.5862 26 6 8.2125 -8.0439 0.0954 27 7 3.2324 -3.8153 -0.9289 28 1 -0.4850 0.8399 0.0004 29 1 0.6241 -2.5568 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 1.5782 -4.7521 1.7359 32 1 3.5613 -6.3380 1.0735 33 1 5.3183 -5.0250 -2.0680 34 1 6.9375 -6.6939 -2.2744 35 1 7.2091 -9.1447 -3.0063 36 1 8.7735 -8.5056 -2.4555 37 1 7.4822 -11.0057 -1.3011 38 1 8.6551 -11.0329 -2.6372 39 1 9.8193 -11.4148 -0.5080 40 1 10.2975 -9.8341 -1.1742 41 1 9.0224 -7.4470 -0.3239 42 1 7.7203 -7.4853 0.8916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610325561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:39 Heat of formation + Delta-G solvation = -12.534093 kcal Electronic energy + Delta-G solvation = -27082.540080 eV Core-core repulsion = 22999.269162 eV Total energy + Delta-G solvation = -4083.270918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.85258 -39.88134 -37.98458 -37.17666 -36.37145 -34.78523 -34.33659 -33.34397 -31.35741 -30.35629 -29.28870 -28.29527 -26.64689 -24.28305 -23.02698 -21.97036 -21.44751 -20.44306 -19.84763 -19.23788 -18.07931 -17.58653 -16.87419 -16.65152 -16.57471 -16.14666 -15.80160 -15.59797 -15.23049 -14.91118 -14.78085 -14.36039 -14.12060 -14.00941 -13.82278 -13.49772 -12.87672 -12.71628 -12.46992 -12.36409 -12.33374 -12.24251 -12.04977 -11.95789 -11.80673 -11.56786 -11.35913 -11.07905 -10.88285 -10.74878 -10.48415 -10.26618 -10.13598 -9.74022 -9.56124 -9.47884 -8.63625 -8.13243 -7.44794 -6.24827 -4.29997 -0.41840 2.10892 2.36560 2.60326 3.03560 3.24646 3.26506 3.28033 3.31968 3.42995 3.54272 3.77504 3.86854 4.02271 4.10093 4.19508 4.23950 4.34062 4.42588 4.63860 4.72349 4.90821 5.09943 5.10297 5.17725 5.27309 5.41997 5.47417 5.55060 5.77631 6.03404 6.20893 6.48752 6.52596 6.84657 6.96595 7.07708 7.45273 7.68033 7.78200 7.92587 8.05104 8.47356 8.63661 8.79443 9.35477 10.83840 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.024096 B = 0.002018 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.754101 B =13874.520409 C =13970.991111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.068 0.932 9 C 0.259 3.741 10 N -0.320 5.320 11 C 0.052 3.948 12 C -0.286 4.286 13 C 0.273 3.727 14 N -0.641 5.641 15 C 0.712 3.288 16 O -0.561 6.561 17 N -0.735 5.735 18 C 0.181 3.819 19 H 0.112 0.888 20 C -0.151 4.151 21 C -0.106 4.106 22 C -0.609 4.609 23 S 2.421 3.579 24 O -0.928 6.928 25 O -0.941 6.941 26 C -0.625 4.625 27 N -0.307 5.307 28 H 0.268 0.732 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.168 0.832 32 H 0.162 0.838 33 H 0.407 0.593 34 H 0.400 0.600 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.805 -20.979 -6.703 28.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.086 0.914 9 C 0.141 3.859 10 N -0.102 5.102 11 C -0.098 4.098 12 C -0.318 4.318 13 C 0.019 3.981 14 N -0.291 5.291 15 C 0.411 3.589 16 O -0.436 6.436 17 N -0.392 5.392 18 C 0.074 3.926 19 H 0.130 0.870 20 C -0.189 4.189 21 C -0.145 4.145 22 C -0.738 4.738 23 S 2.602 3.398 24 O -0.925 6.925 25 O -0.938 6.938 26 C -0.755 4.755 27 N -0.138 5.138 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.185 0.815 32 H 0.179 0.821 33 H 0.242 0.758 34 H 0.234 0.766 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 18.093 -20.586 -5.716 27.997 hybrid contribution 0.906 1.229 -0.987 1.818 sum 18.998 -19.358 -6.703 27.939 Atomic orbital electron populations 1.69904 1.06029 1.27744 1.49665 1.24947 0.94989 0.99535 0.94620 0.86383 0.79372 0.81807 0.78891 1.19980 1.21040 1.20051 1.21211 0.93934 0.89404 1.52170 0.91391 1.19735 0.85601 0.81257 0.99266 1.49068 1.23191 1.19714 1.18218 1.22570 1.00258 0.90237 0.96755 1.21523 1.01936 1.06647 1.01656 1.18773 0.90748 0.94209 0.94374 1.41344 1.31473 1.24880 1.31410 1.15659 0.79918 0.80322 0.83036 1.90908 1.64334 1.61975 1.26340 1.44964 1.33676 1.27593 1.32938 1.20422 0.94030 0.86170 0.91945 0.86988 1.22038 1.02144 0.95872 0.98814 1.21195 0.96406 0.97227 0.99628 1.30316 1.09170 1.14755 1.19527 1.08027 0.75996 0.78139 0.77684 1.93627 1.55019 1.68353 1.75476 1.93608 1.52118 1.84297 1.63798 1.30862 1.10764 1.22497 1.11330 1.77316 1.03859 1.16179 1.16418 0.92261 0.93749 0.92520 0.81468 0.82104 0.75823 0.76571 0.88523 0.89876 0.89115 0.88751 0.84541 0.84755 0.84634 0.83725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.24 13.29 55.43 0.74 -24.50 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -14.64 9.24 -34.44 -0.32 -14.96 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.26 6.55 6.26 -5.20 -0.03 6.52 16 10 N -0.32 -7.40 3.67 -62.56 -0.23 -7.63 16 11 C 0.05 1.03 11.44 -17.24 -0.20 0.84 16 12 C -0.29 -5.66 9.61 -39.84 -0.38 -6.04 16 13 C 0.27 5.37 8.11 -154.36 -1.25 4.12 16 14 N -0.64 -9.33 5.46 -15.50 -0.08 -9.41 16 15 C 0.71 9.53 8.49 -86.92 -0.74 8.79 16 16 O -0.56 -9.56 13.13 5.28 0.07 -9.50 16 17 N -0.74 -5.81 5.08 -58.87 -0.30 -6.11 16 18 C 0.18 1.21 2.28 -68.12 -0.16 1.05 16 19 H 0.11 0.96 7.44 -51.93 -0.39 0.58 16 20 C -0.15 -0.42 5.08 -27.16 -0.14 -0.55 16 21 C -0.11 -0.28 5.73 -26.92 -0.15 -0.43 16 22 C -0.61 -1.77 6.35 37.18 0.24 -1.54 16 23 S 2.42 17.48 5.31 -107.50 -0.57 16.91 16 24 O -0.93 -10.51 17.93 -57.82 -1.04 -11.54 16 25 O -0.94 -10.30 18.10 -57.82 -1.05 -11.35 16 26 C -0.62 -4.11 5.91 37.18 0.22 -3.89 16 27 N -0.31 -6.95 12.42 31.44 0.39 -6.56 16 28 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 31 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 32 H 0.16 3.13 5.91 -52.48 -0.31 2.82 16 33 H 0.41 4.61 8.84 -40.82 -0.36 4.25 16 34 H 0.40 1.81 8.61 -40.82 -0.35 1.46 16 35 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 36 H 0.08 0.06 8.09 -51.93 -0.42 -0.36 16 37 H 0.09 0.30 8.01 -51.93 -0.42 -0.12 16 38 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 39 H 0.14 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.13 0.10 8.14 -51.93 -0.42 -0.32 16 41 H 0.14 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.14 1.29 8.14 -51.92 -0.42 0.87 16 LS Contribution 365.33 15.07 5.51 5.51 Total: -1.00 -39.40 365.33 -10.19 -49.58 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.59 Total: 2.85 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -3.01 Total: -4.50 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.51 Total: -54.22 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -2.01 Total: -32.38 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 17.48 SS G_CDS: -0.57 Total: 16.91 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.40 -10.19 -49.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610325561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.048 kcal (2) G-P(sol) polarization free energy of solvation -39.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds