Wall clock time and date at job start Wed Apr 1 2020 01:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46506 * 109.64121 * 2 1 4 4 C 1.34777 * 119.99873 * 59.30441 * 3 2 1 5 5 O 1.21592 * 119.99797 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99902 * 179.97438 * 4 3 2 7 7 C 1.40198 * 119.99706 * 179.97438 * 6 4 3 8 8 C 1.40396 * 125.97626 * 0.02562 * 7 6 4 9 9 C 1.35248 * 107.87127 * 179.97438 * 8 7 6 10 10 N 1.34963 * 107.85444 * 359.97438 * 9 8 7 11 11 C 1.46496 * 125.97348 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47029 * 125.00450 * 11 10 9 13 13 H 1.08001 * 120.00201 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00072 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99403 * 180.02562 * 14 12 11 16 16 Si 1.86791 * 120.00058 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47284 * 90.00048 * 16 14 12 18 18 H 1.48503 * 109.47225 * 210.00242 * 16 14 12 19 19 H 1.48501 * 109.47178 * 330.00114 * 16 14 12 20 20 N 1.31208 * 125.96783 * 179.69362 * 7 6 4 21 21 C 1.53875 * 109.64538 * 239.57671 * 2 1 3 22 22 C 1.55052 * 106.62186 * 193.09709 * 21 2 1 23 23 S 1.83291 * 102.56760 * 42.43362 * 22 21 2 24 24 O 1.42095 * 109.35437 * 90.18159 * 23 22 21 25 25 O 1.42100 * 109.34945 * 223.25645 * 23 22 21 26 26 C 1.54167 * 109.64830 * 120.43192 * 2 1 3 27 27 H 1.08998 * 109.46897 * 60.69419 * 1 2 3 28 28 H 1.08997 * 109.46834 * 180.69710 * 1 2 3 29 29 H 1.09002 * 109.46553 * 300.69810 * 1 2 3 30 30 H 0.96995 * 120.00050 * 239.02555 * 3 2 1 31 31 H 0.96999 * 120.00050 * 0.02562 * 6 4 3 32 32 H 1.08004 * 126.06659 * 0.02562 * 8 7 6 33 33 H 1.07994 * 126.07013 * 180.02562 * 9 8 7 34 34 H 1.08999 * 109.47432 * 245.00661 * 11 10 9 35 35 H 1.08997 * 109.47277 * 5.01007 * 11 10 9 36 36 H 0.97005 * 119.99409 * 180.02562 * 15 14 12 37 37 H 1.09004 * 110.02607 * 312.38206 * 21 2 1 38 38 H 1.09000 * 110.03292 * 73.75791 * 21 2 1 39 39 H 1.09005 * 110.78710 * 160.69906 * 22 21 2 40 40 H 1.08994 * 110.79183 * 283.97021 * 22 21 2 41 41 H 1.09005 * 110.31586 * 266.53026 * 26 2 1 42 42 H 1.08995 * 110.31797 * 28.72384 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0225 1.3798 0.0000 4 6 1.6878 2.2147 1.0037 5 8 0.9768 1.8229 1.9089 6 7 2.1413 3.4839 1.0040 7 6 1.7927 4.3526 2.0477 8 6 0.9836 4.0344 3.1501 9 6 0.8879 5.1374 3.9268 10 7 1.6076 6.1185 3.3429 11 6 1.7743 7.4824 3.8508 12 6 3.2430 7.7946 3.9792 13 1 3.9787 7.0516 3.7090 14 6 3.6475 9.0290 4.4416 15 7 4.9293 9.3015 4.5531 16 14 2.3752 10.3144 4.9083 17 1 2.0265 10.1673 6.3443 18 1 2.9314 11.6707 4.6704 19 1 1.1561 10.1274 4.0812 20 7 2.1706 5.6032 2.1682 21 6 2.0474 -0.7338 -1.2496 22 6 3.5593 -0.9893 -1.0198 23 16 3.6117 -1.5232 0.7328 24 8 3.4723 -2.9357 0.7992 25 8 4.7022 -0.8880 1.3861 26 6 2.0484 -0.7354 1.2519 27 1 -0.3633 0.5030 -0.8961 28 1 -0.3633 -1.0276 0.0125 29 1 -0.3632 0.5247 0.8837 30 1 2.5927 1.6913 -0.7202 31 1 2.7082 3.7966 0.2816 32 1 0.5204 3.0781 3.3440 33 1 0.3345 5.2185 4.8507 34 1 1.3122 8.1867 3.1592 35 1 1.2982 7.5670 4.8277 36 1 5.2140 10.1698 4.8788 37 1 1.5227 -1.6817 -1.3698 38 1 1.9032 -0.1129 -2.1338 39 1 3.9222 -1.7804 -1.6762 40 1 4.1329 -0.0741 -1.1659 41 1 2.2340 -0.0256 2.0581 42 1 1.3315 -1.4922 1.5703 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610922634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:17 Heat of formation + Delta-G solvation = 2.177665 kcal Electronic energy + Delta-G solvation = -27682.203248 eV Core-core repulsion = 23599.570280 eV Total energy + Delta-G solvation = -4082.632968 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.08514 -40.16824 -37.86363 -37.32792 -36.29825 -34.82609 -33.50677 -32.84233 -31.37057 -30.66739 -29.39112 -28.27512 -27.12050 -24.77328 -23.24168 -22.16393 -20.84604 -20.24860 -19.89091 -19.20197 -18.25089 -17.49372 -17.02744 -16.74550 -16.58947 -16.16748 -15.65975 -15.50582 -15.03866 -14.84492 -14.59654 -14.41824 -14.22302 -13.73281 -13.33303 -13.18706 -13.06264 -12.71682 -12.55505 -12.49689 -12.40350 -12.34140 -12.30673 -12.20513 -12.13464 -11.71743 -11.18168 -11.11184 -10.80155 -10.73869 -10.61730 -10.11949 -10.01597 -9.76777 -9.60317 -9.51717 -8.77134 -8.21635 -7.53023 -6.23851 -4.26234 -0.31982 2.11919 2.15439 2.50786 2.93815 3.14469 3.19324 3.21460 3.22028 3.37366 3.60238 3.69712 3.83136 3.87206 4.02872 4.13500 4.22380 4.34189 4.60666 4.82592 4.97608 5.03684 5.07750 5.16984 5.25337 5.35988 5.38939 5.56614 5.65981 5.92678 6.05330 6.13551 6.29974 6.41972 6.52146 6.67346 6.83265 7.26085 7.37050 7.74929 7.80899 8.32881 8.40512 8.55007 8.86310 9.30980 10.88882 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.022476 B = 0.002339 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.476407 B =11969.957068 C =12526.176506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.209 3.791 3 N -0.743 5.743 4 C 0.716 3.284 5 O -0.558 6.558 6 N -0.641 5.641 7 C 0.277 3.723 8 C -0.282 4.282 9 C 0.051 3.949 10 N -0.319 5.319 11 C 0.232 3.768 12 C -0.535 4.535 13 H 0.086 0.914 14 C 0.076 3.924 15 N -0.887 5.887 16 Si 0.873 3.127 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.264 1.264 20 N -0.298 5.298 21 C -0.121 4.121 22 C -0.596 4.596 23 S 2.383 3.617 24 O -0.939 6.939 25 O -0.932 6.932 26 C -0.601 4.601 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.401 0.599 31 H 0.409 0.591 32 H 0.163 0.837 33 H 0.168 0.832 34 H 0.042 0.958 35 H 0.049 0.951 36 H 0.268 0.732 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.157 0.843 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.245 -21.251 -13.971 27.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.121 3.879 3 N -0.401 5.401 4 C 0.416 3.584 5 O -0.433 6.433 6 N -0.290 5.290 7 C 0.022 3.978 8 C -0.313 4.313 9 C -0.098 4.098 10 N -0.101 5.101 11 C 0.113 3.887 12 C -0.573 4.573 13 H 0.104 0.896 14 C -0.128 4.128 15 N -0.525 5.525 16 Si 0.699 3.301 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.189 1.189 20 N -0.128 5.128 21 C -0.160 4.160 22 C -0.725 4.725 23 S 2.567 3.433 24 O -0.936 6.936 25 O -0.929 6.929 26 C -0.732 4.732 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.112 0.888 30 H 0.236 0.764 31 H 0.244 0.756 32 H 0.181 0.819 33 H 0.186 0.814 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.160 0.840 40 H 0.157 0.843 41 H 0.175 0.825 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.395 -20.936 -13.041 26.055 hybrid contribution -0.803 1.046 -0.458 1.396 sum -9.198 -19.890 -13.498 25.738 Atomic orbital electron populations 1.22258 0.91701 1.03201 1.04829 1.20347 0.96623 0.80072 0.90895 1.45258 1.56586 1.11268 1.27018 1.15569 0.80400 0.79917 0.82531 1.90836 1.40625 1.75455 1.36413 1.41381 1.53247 1.09229 1.25163 1.18770 0.98867 0.89953 0.90206 1.21520 1.11370 1.01284 0.97154 1.22560 0.98620 0.88896 0.99769 1.48603 1.34731 1.11336 1.15440 1.20041 1.00052 0.74428 0.94140 1.21114 0.89348 1.01459 1.45387 0.89616 1.24839 0.95399 0.97745 0.94805 1.69879 1.14252 1.22971 1.45352 0.86904 0.81963 0.81687 0.79512 1.19703 1.20549 1.18876 1.77395 1.22409 1.07784 1.05258 1.22555 0.91487 1.03242 0.98691 1.30718 1.03797 1.13184 1.24808 1.09231 0.78407 0.76264 0.79424 1.93619 1.86877 1.27364 1.85740 1.93654 1.49718 1.77391 1.72123 1.31058 1.20678 1.13282 1.08156 0.91780 0.91186 0.88827 0.76365 0.75646 0.81930 0.81429 0.94069 0.93334 0.92175 0.87374 0.87480 0.84030 0.84331 0.82478 0.83322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 8.28 37.16 0.31 -0.73 16 2 C 0.21 1.27 0.75 -130.75 -0.10 1.17 16 3 N -0.74 -5.53 4.98 -51.41 -0.26 -5.79 16 4 C 0.72 8.86 7.71 -86.92 -0.67 8.19 16 5 O -0.56 -8.27 10.01 5.28 0.05 -8.22 16 6 N -0.64 -9.02 5.46 -15.51 -0.08 -9.11 16 7 C 0.28 5.26 8.11 -154.36 -1.25 4.01 16 8 C -0.28 -5.24 9.61 -39.83 -0.38 -5.62 16 9 C 0.05 0.95 11.44 -17.24 -0.20 0.76 16 10 N -0.32 -7.09 3.67 -62.57 -0.23 -7.32 16 11 C 0.23 5.44 5.33 -5.20 -0.03 5.41 16 12 C -0.53 -15.02 9.79 -34.44 -0.34 -15.36 16 13 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 14 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 15 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 16 Si 0.87 20.00 27.47 -169.99 -4.67 15.33 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 20 N -0.30 -6.64 12.42 31.44 0.39 -6.25 16 21 C -0.12 -0.34 5.25 -25.19 -0.13 -0.47 16 22 C -0.60 -2.16 7.14 38.24 0.27 -1.89 16 23 S 2.38 19.01 6.10 -107.50 -0.66 18.35 16 24 O -0.94 -10.18 18.14 -57.73 -1.05 -11.23 16 25 O -0.93 -11.93 18.15 -57.73 -1.05 -12.97 16 26 C -0.60 -4.46 5.99 37.77 0.23 -4.23 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.31 8.12 -51.93 -0.42 -0.12 16 29 H 0.09 0.90 6.11 -51.93 -0.32 0.58 16 30 H 0.40 1.76 8.41 -40.82 -0.34 1.42 16 31 H 0.41 4.59 8.84 -40.82 -0.36 4.23 16 32 H 0.16 2.88 5.91 -52.48 -0.31 2.57 16 33 H 0.17 2.48 8.06 -52.49 -0.42 2.06 16 34 H 0.04 0.96 7.20 -51.93 -0.37 0.59 16 35 H 0.05 1.03 7.50 -51.93 -0.39 0.64 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.11 0.13 8.11 -51.93 -0.42 -0.29 16 38 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 39 H 0.14 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.14 0.36 8.08 -51.93 -0.42 -0.05 16 41 H 0.16 1.59 6.28 -51.93 -0.33 1.26 16 42 H 0.15 0.82 7.87 -51.93 -0.41 0.41 16 LS Contribution 357.25 15.07 5.38 5.38 Total: -1.00 -39.98 357.25 -9.15 -49.13 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.37 Total: 5.22 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -2.39 Total: -6.74 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.59 Total: -54.26 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -2.04 Total: -32.42 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.67 Total: 15.33 kcal Atomic # 16 Polarization: 19.01 SS G_CDS: -0.66 Total: 18.35 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -39.98 -9.15 -49.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610922634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.309 kcal (2) G-P(sol) polarization free energy of solvation -39.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds