Wall clock time and date at job start Wed Apr 1 2020 01:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46506 * 109.64121 * 2 1 4 4 C 1.34777 * 119.99873 * 59.30441 * 3 2 1 5 5 O 1.21592 * 119.99797 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99902 * 179.97438 * 4 3 2 7 7 C 1.40198 * 119.99706 * 179.97438 * 6 4 3 8 8 C 1.40396 * 125.97626 * 0.02562 * 7 6 4 9 9 C 1.35248 * 107.87127 * 179.97438 * 8 7 6 10 10 N 1.34963 * 107.85444 * 359.97438 * 9 8 7 11 11 C 1.46496 * 125.97348 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47029 * 125.00450 * 11 10 9 13 13 H 1.08001 * 120.00201 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00072 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99403 * 180.02562 * 14 12 11 16 16 Si 1.86791 * 120.00058 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47284 * 90.00048 * 16 14 12 18 18 H 1.48503 * 109.47225 * 210.00242 * 16 14 12 19 19 H 1.48501 * 109.47178 * 330.00114 * 16 14 12 20 20 N 1.31208 * 125.96783 * 179.69362 * 7 6 4 21 21 C 1.53875 * 109.64538 * 239.57671 * 2 1 3 22 22 C 1.55052 * 106.62186 * 193.09709 * 21 2 1 23 23 S 1.83291 * 102.56760 * 42.43362 * 22 21 2 24 24 O 1.42095 * 109.35437 * 90.18159 * 23 22 21 25 25 O 1.42100 * 109.34945 * 223.25645 * 23 22 21 26 26 C 1.54167 * 109.64830 * 120.43192 * 2 1 3 27 27 H 1.08998 * 109.46897 * 60.69419 * 1 2 3 28 28 H 1.08997 * 109.46834 * 180.69710 * 1 2 3 29 29 H 1.09002 * 109.46553 * 300.69810 * 1 2 3 30 30 H 0.96995 * 120.00050 * 239.02555 * 3 2 1 31 31 H 0.96999 * 120.00050 * 0.02562 * 6 4 3 32 32 H 1.08004 * 126.06659 * 0.02562 * 8 7 6 33 33 H 1.07994 * 126.07013 * 180.02562 * 9 8 7 34 34 H 1.08999 * 109.47432 * 245.00661 * 11 10 9 35 35 H 1.08997 * 109.47277 * 5.01007 * 11 10 9 36 36 H 0.97005 * 119.99409 * 180.02562 * 15 14 12 37 37 H 1.09004 * 110.02607 * 312.38206 * 21 2 1 38 38 H 1.09000 * 110.03292 * 73.75791 * 21 2 1 39 39 H 1.09005 * 110.78710 * 160.69906 * 22 21 2 40 40 H 1.08994 * 110.79183 * 283.97021 * 22 21 2 41 41 H 1.09005 * 110.31586 * 266.53026 * 26 2 1 42 42 H 1.08995 * 110.31797 * 28.72384 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0225 1.3798 0.0000 4 6 1.6878 2.2147 1.0037 5 8 0.9768 1.8229 1.9089 6 7 2.1413 3.4839 1.0040 7 6 1.7927 4.3526 2.0477 8 6 0.9836 4.0344 3.1501 9 6 0.8879 5.1374 3.9268 10 7 1.6076 6.1185 3.3429 11 6 1.7743 7.4824 3.8508 12 6 3.2430 7.7946 3.9792 13 1 3.9787 7.0516 3.7090 14 6 3.6475 9.0290 4.4416 15 7 4.9293 9.3015 4.5531 16 14 2.3752 10.3144 4.9083 17 1 2.0265 10.1673 6.3443 18 1 2.9314 11.6707 4.6704 19 1 1.1561 10.1274 4.0812 20 7 2.1706 5.6032 2.1682 21 6 2.0474 -0.7338 -1.2496 22 6 3.5593 -0.9893 -1.0198 23 16 3.6117 -1.5232 0.7328 24 8 3.4723 -2.9357 0.7992 25 8 4.7022 -0.8880 1.3861 26 6 2.0484 -0.7354 1.2519 27 1 -0.3633 0.5030 -0.8961 28 1 -0.3633 -1.0276 0.0125 29 1 -0.3632 0.5247 0.8837 30 1 2.5927 1.6913 -0.7202 31 1 2.7082 3.7966 0.2816 32 1 0.5204 3.0781 3.3440 33 1 0.3345 5.2185 4.8507 34 1 1.3122 8.1867 3.1592 35 1 1.2982 7.5670 4.8277 36 1 5.2140 10.1698 4.8788 37 1 1.5227 -1.6817 -1.3698 38 1 1.9032 -0.1129 -2.1338 39 1 3.9222 -1.7804 -1.6762 40 1 4.1329 -0.0741 -1.1659 41 1 2.2340 -0.0256 2.0581 42 1 1.3315 -1.4922 1.5703 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610922634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:15 Heat of formation + Delta-G solvation = -31.991811 kcal Electronic energy + Delta-G solvation = -27683.684948 eV Core-core repulsion = 23599.570280 eV Total energy + Delta-G solvation = -4084.114668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.29496 -41.31129 -38.62843 -38.08928 -37.05841 -36.13059 -35.23316 -33.87328 -32.77640 -31.43205 -30.87502 -28.93663 -28.79156 -25.32998 -24.65417 -23.45190 -22.12202 -21.27972 -21.01118 -19.89974 -19.26856 -19.06007 -18.30647 -17.86001 -17.38159 -17.04873 -16.83787 -16.53686 -16.19086 -15.85877 -15.76648 -15.37363 -14.99726 -14.86720 -14.79998 -14.37012 -13.95640 -13.82828 -13.80785 -13.62258 -13.33084 -13.19689 -13.10043 -12.97530 -12.83274 -12.53607 -12.51468 -12.31834 -12.17976 -11.82276 -11.77299 -11.56095 -11.41206 -11.22564 -10.89871 -10.86661 -10.33384 -9.72892 -9.03184 -8.37185 -6.47494 -0.91037 1.04054 1.12323 1.36812 1.40086 1.49721 1.59809 1.70482 2.07135 2.29358 2.39377 2.65313 2.95140 2.98463 3.13896 3.36179 3.43264 3.58736 3.93548 4.02333 4.11149 4.22750 4.39953 4.61542 4.62667 4.76614 4.78528 4.80689 4.85480 4.87482 4.95014 4.97375 5.06102 5.17968 5.25147 5.46267 5.49707 5.81754 5.94410 6.03493 6.42527 6.58186 6.73097 7.13379 7.16193 7.42243 8.80085 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.022476 B = 0.002339 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.476407 B =11969.957068 C =12526.176506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.203 3.797 3 N -0.723 5.723 4 C 0.712 3.288 5 O -0.583 6.583 6 N -0.639 5.639 7 C 0.284 3.716 8 C -0.291 4.291 9 C 0.058 3.942 10 N -0.346 5.346 11 C 0.240 3.760 12 C -0.547 4.547 13 H 0.025 0.975 14 C 0.013 3.987 15 N -0.943 5.943 16 Si 0.957 3.043 17 H -0.254 1.254 18 H -0.281 1.281 19 H -0.238 1.238 20 N -0.350 5.350 21 C -0.114 4.114 22 C -0.562 4.562 23 S 2.371 3.629 24 O -0.975 6.975 25 O -0.994 6.994 26 C -0.599 4.599 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.419 0.581 31 H 0.420 0.580 32 H 0.171 0.829 33 H 0.208 0.792 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.272 0.728 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.172 0.828 40 H 0.156 0.844 41 H 0.127 0.873 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.980 -21.783 -16.041 29.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.115 3.885 3 N -0.382 5.382 4 C 0.411 3.589 5 O -0.460 6.460 6 N -0.291 5.291 7 C 0.028 3.972 8 C -0.322 4.322 9 C -0.090 4.090 10 N -0.128 5.128 11 C 0.120 3.880 12 C -0.585 4.585 13 H 0.044 0.956 14 C -0.186 4.186 15 N -0.582 5.582 16 Si 0.777 3.223 17 H -0.178 1.178 18 H -0.206 1.206 19 H -0.161 1.161 20 N -0.181 5.181 21 C -0.153 4.153 22 C -0.695 4.695 23 S 2.561 3.439 24 O -0.972 6.972 25 O -0.991 6.991 26 C -0.731 4.731 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.257 0.743 31 H 0.257 0.743 32 H 0.189 0.811 33 H 0.225 0.775 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.154 0.846 38 H 0.159 0.841 39 H 0.190 0.810 40 H 0.174 0.826 41 H 0.145 0.855 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.111 -21.553 -15.121 28.577 hybrid contribution 0.076 1.021 0.071 1.026 sum -11.035 -20.532 -15.050 27.746 Atomic orbital electron populations 1.22237 0.91479 1.04437 1.03748 1.20694 0.96865 0.79023 0.91893 1.45191 1.55885 1.11170 1.25923 1.15807 0.80145 0.79625 0.83282 1.90815 1.41713 1.75739 1.37733 1.41480 1.53639 1.09433 1.24523 1.19135 0.97437 0.89564 0.91062 1.21749 1.11589 1.01648 0.97255 1.23245 0.97410 0.87815 1.00551 1.48476 1.36491 1.11588 1.16281 1.19860 0.96741 0.75637 0.95727 1.21250 0.91177 1.00618 1.45476 0.95640 1.25946 0.97956 1.00382 0.94271 1.70062 1.17243 1.24012 1.46912 0.85600 0.79162 0.77249 0.80255 1.17814 1.20647 1.16101 1.77301 1.24660 1.09603 1.06548 1.22729 0.90284 1.04721 0.97555 1.30536 1.05323 1.14744 1.18936 1.09295 0.77560 0.75288 0.81780 1.93564 1.87083 1.29371 1.87222 1.93573 1.52300 1.77995 1.75280 1.30983 1.20795 1.13061 1.08246 0.90426 0.88823 0.92334 0.74258 0.74276 0.81142 0.77515 0.93626 0.90172 0.91901 0.84619 0.84068 0.81033 0.82627 0.85502 0.81827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 8.28 71.98 0.60 -1.03 16 2 C 0.20 1.92 0.75 4.29 0.00 1.92 16 3 N -0.72 -9.29 4.98 -434.83 -2.17 -11.46 16 4 C 0.71 17.24 7.71 179.06 1.38 18.63 16 5 O -0.58 -17.38 10.01 -4.01 -0.04 -17.42 16 6 N -0.64 -18.02 5.46 -321.24 -1.75 -19.77 16 7 C 0.28 10.98 8.11 133.31 1.08 12.06 16 8 C -0.29 -10.81 9.61 22.11 0.21 -10.60 16 9 C 0.06 2.11 11.44 83.52 0.96 3.06 16 10 N -0.35 -15.47 3.67 -351.86 -1.29 -16.76 16 11 C 0.24 11.12 5.33 85.63 0.46 11.57 16 12 C -0.55 -31.76 9.79 25.60 0.25 -31.51 16 13 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 14 C 0.01 0.74 5.47 84.65 0.46 1.21 16 15 N -0.94 -58.54 13.96 21.45 0.30 -58.24 16 16 Si 0.96 40.74 27.47 68.60 1.88 42.63 16 17 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 18 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.24 -9.08 6.54 99.48 0.65 -8.42 16 20 N -0.35 -16.08 12.42 -54.44 -0.68 -16.76 16 21 C -0.11 -0.06 5.25 31.59 0.17 0.11 16 22 C -0.56 -1.84 7.14 72.68 0.52 -1.33 16 23 S 2.37 37.04 6.10 -56.49 -0.34 36.69 16 24 O -0.98 -21.10 18.14 -127.47 -2.31 -23.41 16 25 O -0.99 -26.96 18.15 -127.47 -2.31 -29.27 16 26 C -0.60 -8.60 5.99 72.38 0.43 -8.17 16 27 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.09 0.50 8.12 -2.39 -0.02 0.48 16 29 H 0.06 1.07 6.11 -2.39 -0.01 1.05 16 30 H 0.42 2.39 8.41 -92.71 -0.78 1.61 16 31 H 0.42 9.37 8.84 -92.71 -0.82 8.55 16 32 H 0.17 6.04 5.91 -2.91 -0.02 6.02 16 33 H 0.21 5.60 8.06 -2.91 -0.02 5.57 16 34 H 0.05 2.06 7.20 -2.39 -0.02 2.04 16 35 H 0.08 3.19 7.50 -2.39 -0.02 3.17 16 36 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 37 H 0.14 -0.48 8.11 -2.38 -0.02 -0.50 16 38 H 0.14 -0.64 8.14 -2.39 -0.02 -0.66 16 39 H 0.17 -0.22 8.14 -2.38 -0.02 -0.24 16 40 H 0.16 0.15 8.08 -2.39 -0.02 0.13 16 41 H 0.13 2.73 6.28 -2.38 -0.01 2.71 16 42 H 0.16 1.72 7.87 -2.39 -0.02 1.70 16 Total: -1.00 -95.40 357.25 -2.76 -98.17 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -0.57 Total: 19.67 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 6.52 Total: -4.07 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -5.59 Total: -122.99 kcal Atomic # 8 Polarization: -65.43 SS G_CDS: -4.67 Total: -70.10 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 1.88 Total: 42.63 kcal Atomic # 16 Polarization: 37.04 SS G_CDS: -0.34 Total: 36.69 kcal Total: -95.40 -2.76 -98.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610922634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.175 kcal (2) G-P(sol) polarization free energy of solvation -95.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds