Wall clock time and date at job start Wed Apr 1 2020 01:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35251 * 126.07147 * 2 1 4 4 C 1.40394 * 107.86595 * 180.15516 * 3 2 1 5 5 N 1.40199 * 125.97044 * 179.82502 * 4 3 2 6 6 C 1.34770 * 119.99960 * 359.71463 * 5 4 3 7 7 O 1.21594 * 120.00043 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00212 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00213 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.53447 * 325.36615 * 9 8 6 11 11 C 1.53879 * 109.64362 * 205.00421 * 9 8 6 12 12 C 1.55051 * 106.66190 * 192.99089 * 11 9 8 13 13 S 1.83288 * 102.56496 * 42.40758 * 12 11 9 14 14 O 1.42112 * 109.35169 * 90.18765 * 13 12 11 15 15 O 1.42098 * 109.35379 * 223.38487 * 13 12 11 16 16 C 1.54187 * 109.68876 * 85.71857 * 9 8 6 17 17 N 1.31209 * 108.06037 * 359.56314 * 4 3 2 18 18 N 1.34962 * 126.07069 * 179.67191 * 2 1 3 19 19 C 1.46499 * 125.97757 * 0.02596 * 18 2 1 20 20 C 1.50704 * 109.47001 * 269.99810 * 19 18 2 21 21 H 1.07998 * 120.00327 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99946 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00131 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99972 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46949 * 60.00575 * 24 22 20 26 26 H 1.48502 * 109.46918 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47280 * 299.99961 * 24 22 20 28 28 H 1.08995 * 109.47180 * 270.32238 * 1 2 3 29 29 H 1.09001 * 109.47266 * 30.32782 * 1 2 3 30 30 H 1.09002 * 109.46744 * 150.32472 * 1 2 3 31 31 H 1.08001 * 126.06201 * 359.97438 * 3 2 1 32 32 H 0.97000 * 119.99897 * 179.71710 * 5 4 3 33 33 H 0.97000 * 119.99646 * 0.02562 * 8 6 5 34 34 H 1.09002 * 110.02983 * 73.67605 * 11 9 8 35 35 H 1.09000 * 110.02705 * 312.30775 * 11 9 8 36 36 H 1.08996 * 110.78938 * 160.67598 * 12 11 9 37 37 H 1.08995 * 110.78952 * 283.95063 * 12 11 9 38 38 H 1.08998 * 110.27559 * 28.81209 * 16 9 8 39 39 H 1.08999 * 110.42809 * 266.67715 * 16 9 8 40 40 H 1.09006 * 109.47255 * 29.99767 * 19 18 2 41 41 H 1.09003 * 109.47143 * 149.99709 * 19 18 2 42 42 H 0.96999 * 119.99874 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0932 0.0000 4 6 3.6370 0.6546 -0.0036 5 7 4.7738 1.4752 -0.0083 6 6 4.6370 2.8159 -0.0154 7 8 3.5277 3.3139 -0.0173 8 7 5.7298 3.6048 -0.0193 9 6 5.5811 5.0622 -0.0265 10 1 4.7032 5.3361 -0.6117 11 6 6.8352 5.7071 -0.6424 12 6 6.7609 7.2216 -0.3185 13 16 6.2016 7.2292 1.4269 14 8 7.3347 7.2106 2.2845 15 8 5.1996 8.2224 1.5961 16 6 5.4206 5.5752 1.4186 17 7 3.6337 -0.6575 0.0038 18 7 2.3016 -1.0909 0.0062 19 6 1.8501 -2.4845 0.0137 20 6 1.6948 -2.9546 1.4371 21 1 1.9104 -2.2824 2.2544 22 6 1.2764 -4.2426 1.6959 23 7 1.0133 -5.0611 0.7006 24 14 1.0846 -4.8256 3.4603 25 1 0.0842 -3.9768 4.1560 26 1 0.6268 -6.2382 3.4678 27 1 2.3908 -4.7254 4.1595 28 1 -0.3633 0.0058 1.0276 29 1 -0.3634 0.8870 -0.5189 30 1 -0.3633 -0.8929 -0.5088 31 1 1.9720 2.1211 -0.0004 32 1 5.6587 1.0779 -0.0064 33 1 6.6147 3.2076 -0.0174 34 1 6.8409 5.5560 -1.7218 35 1 7.7327 5.2744 -0.2004 36 1 7.7426 7.6859 -0.4123 37 1 6.0360 7.7198 -0.9622 38 1 5.9333 4.9109 2.1143 39 1 4.3652 5.6536 1.6795 40 1 0.8916 -2.5587 -0.5001 41 1 2.5850 -3.1073 -0.4965 42 1 0.7193 -5.9674 0.8828 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611266746.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:11 Heat of formation + Delta-G solvation = -13.222202 kcal Electronic energy + Delta-G solvation = -26976.850953 eV Core-core repulsion = 22893.550196 eV Total energy + Delta-G solvation = -4083.300756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.91225 -39.92713 -37.53901 -37.35534 -36.40861 -34.85959 -33.64257 -33.10872 -31.42899 -30.83086 -29.83551 -26.75760 -26.38052 -25.62190 -23.27276 -22.28816 -21.44385 -20.02055 -19.72100 -19.25639 -18.03483 -17.41869 -17.12702 -16.70722 -16.37348 -16.07055 -15.62201 -15.53550 -15.02182 -14.70670 -14.67021 -14.36228 -14.27273 -13.99515 -13.29999 -12.99776 -12.92656 -12.70470 -12.57101 -12.49643 -12.42887 -12.31975 -12.22688 -11.79475 -11.70426 -11.42483 -11.28555 -11.14325 -10.91910 -10.83495 -10.51789 -10.28993 -10.12232 -9.75543 -9.64058 -9.51711 -8.65907 -7.97609 -7.47280 -6.27470 -4.35183 -0.45045 1.96601 2.22740 2.54897 2.96222 3.13568 3.21832 3.25778 3.29159 3.40343 3.60398 3.71255 3.79162 3.93414 4.07135 4.20450 4.27832 4.30521 4.43054 4.86089 5.00998 5.06255 5.09016 5.22347 5.38497 5.41267 5.65629 5.85431 5.98663 6.08809 6.14052 6.41919 6.46024 6.55774 6.89026 7.00216 7.04883 7.44137 7.64804 7.80521 7.86829 8.02574 8.41944 8.62130 8.72489 9.31155 10.79757 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.022489 B = 0.002037 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.756768 B =13742.687606 C =14017.390704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.092 3.908 3 C -0.289 4.289 4 C 0.279 3.721 5 N -0.641 5.641 6 C 0.714 3.286 7 O -0.561 6.561 8 N -0.736 5.736 9 C 0.176 3.824 10 H 0.115 0.885 11 C -0.130 4.130 12 C -0.586 4.586 13 S 2.393 3.607 14 O -0.935 6.935 15 O -0.934 6.934 16 C -0.612 4.612 17 N -0.322 5.322 18 N -0.317 5.317 19 C 0.259 3.741 20 C -0.536 4.536 21 H 0.064 0.936 22 C 0.066 3.934 23 N -0.892 5.892 24 Si 0.907 3.093 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.275 1.275 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.161 0.839 32 H 0.407 0.593 33 H 0.401 0.599 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.149 0.851 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.500 21.976 -4.881 25.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.320 4.320 4 C 0.026 3.974 5 N -0.291 5.291 6 C 0.413 3.587 7 O -0.435 6.435 8 N -0.393 5.393 9 C 0.068 3.932 10 H 0.133 0.867 11 C -0.169 4.169 12 C -0.716 4.716 13 S 2.575 3.425 14 O -0.932 6.932 15 O -0.931 6.931 16 C -0.743 4.743 17 N -0.153 5.153 18 N -0.100 5.100 19 C 0.141 3.859 20 C -0.575 4.575 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.734 3.266 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.200 1.200 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.178 0.822 32 H 0.242 0.758 33 H 0.236 0.764 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.167 0.833 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.176 21.739 -4.211 24.803 hybrid contribution 0.352 -0.880 0.413 1.034 sum 11.528 20.859 -3.799 24.133 Atomic orbital electron populations 1.20335 0.87873 1.02836 1.03192 1.21072 0.94928 0.87144 1.00819 1.21220 0.89634 0.99824 1.21356 1.18644 0.86456 0.89289 1.03030 1.41335 1.07774 1.03574 1.76379 1.15596 0.84627 0.80522 0.77926 1.90890 1.23352 1.73413 1.55885 1.44936 1.08103 1.05123 1.81089 1.21110 0.99938 0.79982 0.92130 0.86711 1.22467 0.98201 0.91012 1.05216 1.30600 1.13494 1.03059 1.24441 1.08981 0.76419 0.78208 0.78863 1.93640 1.50232 1.86699 1.62625 1.93636 1.59024 1.55391 1.85081 1.31128 1.15417 1.22221 1.05488 1.77255 1.00017 1.08266 1.29726 1.48984 1.00854 1.07806 1.52314 1.19686 0.95964 0.71297 0.98914 1.21276 1.46902 0.97976 0.91335 0.91826 1.24926 0.94654 0.96043 0.98146 1.69910 1.44841 1.07013 1.31217 0.86410 0.78806 0.77674 0.83758 1.19921 1.20947 1.20010 0.90412 0.90800 0.90856 0.82212 0.75805 0.76433 0.87409 0.88706 0.83969 0.83910 0.83906 0.83326 0.92776 0.93030 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 10.11 36.01 0.36 -1.05 16 2 C 0.09 1.89 6.93 -82.28 -0.57 1.32 16 3 C -0.29 -5.77 9.52 -39.83 -0.38 -6.15 16 4 C 0.28 5.44 8.11 -154.36 -1.25 4.19 16 5 N -0.64 -9.06 5.46 -15.51 -0.08 -9.15 16 6 C 0.71 9.13 8.51 -86.92 -0.74 8.39 16 7 O -0.56 -9.10 13.13 5.28 0.07 -9.03 16 8 N -0.74 -5.39 5.06 -57.62 -0.29 -5.68 16 9 C 0.18 1.01 2.89 -66.85 -0.19 0.82 16 10 H 0.11 0.75 7.57 -51.93 -0.39 0.36 16 11 C -0.13 -0.33 5.97 -25.19 -0.15 -0.48 16 12 C -0.59 -1.44 7.31 38.24 0.28 -1.16 16 13 S 2.39 14.50 6.11 -107.50 -0.66 13.85 16 14 O -0.93 -8.95 18.15 -57.71 -1.05 -10.00 16 15 O -0.93 -9.50 18.15 -57.71 -1.05 -10.54 16 16 C -0.61 -3.72 6.92 37.78 0.26 -3.45 16 17 N -0.32 -7.22 12.59 31.44 0.40 -6.82 16 18 N -0.32 -7.38 3.59 -58.32 -0.21 -7.59 16 19 C 0.26 6.55 5.99 -5.19 -0.03 6.52 16 20 C -0.54 -14.62 9.39 -34.44 -0.32 -14.95 16 21 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 22 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -24.83 13.29 55.43 0.74 -24.10 16 24 Si 0.91 20.96 29.54 -169.99 -5.02 15.93 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.24 7.07 -51.93 -0.37 0.87 16 31 H 0.16 3.10 5.91 -52.49 -0.31 2.79 16 32 H 0.41 4.42 8.84 -40.82 -0.36 4.06 16 33 H 0.40 1.64 8.61 -40.82 -0.35 1.29 16 34 H 0.11 0.18 8.14 -51.93 -0.42 -0.25 16 35 H 0.09 0.10 8.12 -51.93 -0.42 -0.32 16 36 H 0.14 0.15 8.14 -51.93 -0.42 -0.28 16 37 H 0.14 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.14 0.80 8.07 -51.93 -0.42 0.39 16 39 H 0.15 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 1.35 7.04 -51.93 -0.37 0.99 16 41 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 367.80 15.07 5.54 5.54 Total: -1.00 -38.99 367.80 -9.94 -48.92 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.49 Total: 2.98 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -2.83 Total: -4.31 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.55 Total: -53.34 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -2.03 Total: -29.57 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 14.50 SS G_CDS: -0.66 Total: 13.85 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.99 -9.94 -48.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611266746.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.702 kcal (2) G-P(sol) polarization free energy of solvation -38.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds