Wall clock time and date at job start Wed Apr 1 2020 01:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35251 * 126.07147 * 2 1 4 4 C 1.40394 * 107.86595 * 180.15516 * 3 2 1 5 5 N 1.40199 * 125.97044 * 179.82502 * 4 3 2 6 6 C 1.34770 * 119.99960 * 359.71463 * 5 4 3 7 7 O 1.21594 * 120.00043 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00212 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00213 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.53447 * 325.36615 * 9 8 6 11 11 C 1.53879 * 109.64362 * 205.00421 * 9 8 6 12 12 C 1.55051 * 106.66190 * 192.99089 * 11 9 8 13 13 S 1.83288 * 102.56496 * 42.40758 * 12 11 9 14 14 O 1.42112 * 109.35169 * 90.18765 * 13 12 11 15 15 O 1.42098 * 109.35379 * 223.38487 * 13 12 11 16 16 C 1.54187 * 109.68876 * 85.71857 * 9 8 6 17 17 N 1.31209 * 108.06037 * 359.56314 * 4 3 2 18 18 N 1.34962 * 126.07069 * 179.67191 * 2 1 3 19 19 C 1.46499 * 125.97757 * 0.02596 * 18 2 1 20 20 C 1.50704 * 109.47001 * 269.99810 * 19 18 2 21 21 H 1.07998 * 120.00327 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99946 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00131 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99972 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46949 * 60.00575 * 24 22 20 26 26 H 1.48502 * 109.46918 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47280 * 299.99961 * 24 22 20 28 28 H 1.08995 * 109.47180 * 270.32238 * 1 2 3 29 29 H 1.09001 * 109.47266 * 30.32782 * 1 2 3 30 30 H 1.09002 * 109.46744 * 150.32472 * 1 2 3 31 31 H 1.08001 * 126.06201 * 359.97438 * 3 2 1 32 32 H 0.97000 * 119.99897 * 179.71710 * 5 4 3 33 33 H 0.97000 * 119.99646 * 0.02562 * 8 6 5 34 34 H 1.09002 * 110.02983 * 73.67605 * 11 9 8 35 35 H 1.09000 * 110.02705 * 312.30775 * 11 9 8 36 36 H 1.08996 * 110.78938 * 160.67598 * 12 11 9 37 37 H 1.08995 * 110.78952 * 283.95063 * 12 11 9 38 38 H 1.08998 * 110.27559 * 28.81209 * 16 9 8 39 39 H 1.08999 * 110.42809 * 266.67715 * 16 9 8 40 40 H 1.09006 * 109.47255 * 29.99767 * 19 18 2 41 41 H 1.09003 * 109.47143 * 149.99709 * 19 18 2 42 42 H 0.96999 * 119.99874 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0932 0.0000 4 6 3.6370 0.6546 -0.0036 5 7 4.7738 1.4752 -0.0083 6 6 4.6370 2.8159 -0.0154 7 8 3.5277 3.3139 -0.0173 8 7 5.7298 3.6048 -0.0193 9 6 5.5811 5.0622 -0.0265 10 1 4.7032 5.3361 -0.6117 11 6 6.8352 5.7071 -0.6424 12 6 6.7609 7.2216 -0.3185 13 16 6.2016 7.2292 1.4269 14 8 7.3347 7.2106 2.2845 15 8 5.1996 8.2224 1.5961 16 6 5.4206 5.5752 1.4186 17 7 3.6337 -0.6575 0.0038 18 7 2.3016 -1.0909 0.0062 19 6 1.8501 -2.4845 0.0137 20 6 1.6948 -2.9546 1.4371 21 1 1.9104 -2.2824 2.2544 22 6 1.2764 -4.2426 1.6959 23 7 1.0133 -5.0611 0.7006 24 14 1.0846 -4.8256 3.4603 25 1 0.0842 -3.9768 4.1560 26 1 0.6268 -6.2382 3.4678 27 1 2.3908 -4.7254 4.1595 28 1 -0.3633 0.0058 1.0276 29 1 -0.3634 0.8870 -0.5189 30 1 -0.3633 -0.8929 -0.5088 31 1 1.9720 2.1211 -0.0004 32 1 5.6587 1.0779 -0.0064 33 1 6.6147 3.2076 -0.0174 34 1 6.8409 5.5560 -1.7218 35 1 7.7327 5.2744 -0.2004 36 1 7.7426 7.6859 -0.4123 37 1 6.0360 7.7198 -0.9622 38 1 5.9333 4.9109 2.1143 39 1 4.3652 5.6536 1.6795 40 1 0.8916 -2.5587 -0.5001 41 1 2.5850 -3.1073 -0.4965 42 1 0.7193 -5.9674 0.8828 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611266746.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:10 Heat of formation + Delta-G solvation = -44.547253 kcal Electronic energy + Delta-G solvation = -26978.209309 eV Core-core repulsion = 22893.550196 eV Total energy + Delta-G solvation = -4084.659112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.31779 -41.07888 -38.18298 -38.00061 -37.03708 -36.23747 -35.32715 -34.07797 -32.83996 -32.52406 -30.38937 -28.55128 -27.86235 -26.23228 -24.95493 -23.27704 -22.16352 -21.32996 -21.12915 -19.80394 -19.15188 -18.76842 -18.10063 -17.66035 -17.52246 -17.08784 -16.74495 -16.52719 -16.33970 -15.93922 -15.75370 -15.50320 -15.09720 -14.81301 -14.68329 -14.31145 -13.79074 -13.73883 -13.57017 -13.54233 -13.32926 -13.22166 -13.15100 -13.10534 -12.98891 -12.84724 -12.65913 -12.25279 -12.15820 -12.12838 -11.80285 -11.56905 -11.36601 -11.32166 -11.13656 -10.73002 -10.32790 -9.56028 -9.08032 -8.32231 -6.49944 -0.92286 1.01810 1.07838 1.38364 1.39581 1.48594 1.59530 1.68378 2.06915 2.35097 2.36739 2.68947 2.97184 3.00768 3.17216 3.38814 3.59496 3.71642 3.87407 3.97670 4.09072 4.18373 4.44947 4.54093 4.69218 4.72715 4.78656 4.85774 4.90321 4.91394 5.00410 5.02575 5.05083 5.15060 5.21753 5.40548 5.53997 5.81695 5.86144 5.98239 6.27493 6.61638 6.74163 7.13422 7.20899 7.40783 8.73205 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.022489 B = 0.002037 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.756768 B =13742.687606 C =14017.390704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.086 3.914 3 C -0.297 4.297 4 C 0.291 3.709 5 N -0.634 5.634 6 C 0.712 3.288 7 O -0.596 6.596 8 N -0.710 5.710 9 C 0.167 3.833 10 H 0.109 0.891 11 C -0.125 4.125 12 C -0.552 4.552 13 S 2.397 3.603 14 O -0.975 6.975 15 O -0.984 6.984 16 C -0.612 4.612 17 N -0.359 5.359 18 N -0.344 5.344 19 C 0.276 3.724 20 C -0.553 4.553 21 H 0.049 0.951 22 C 0.023 3.977 23 N -0.918 5.918 24 Si 0.970 3.030 25 H -0.266 1.266 26 H -0.273 1.273 27 H -0.276 1.276 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.168 0.832 32 H 0.423 0.577 33 H 0.420 0.580 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.170 0.830 37 H 0.162 0.838 38 H 0.146 0.854 39 H 0.134 0.866 40 H 0.052 0.948 41 H 0.025 0.975 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.801 23.188 -5.467 27.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 C -0.328 4.328 4 C 0.036 3.964 5 N -0.286 5.286 6 C 0.411 3.589 7 O -0.473 6.473 8 N -0.368 5.368 9 C 0.060 3.940 10 H 0.127 0.873 11 C -0.164 4.164 12 C -0.686 4.686 13 S 2.584 3.416 14 O -0.972 6.972 15 O -0.981 6.981 16 C -0.743 4.743 17 N -0.190 5.190 18 N -0.127 5.127 19 C 0.157 3.843 20 C -0.591 4.591 21 H 0.067 0.933 22 C -0.178 4.178 23 N -0.556 5.556 24 Si 0.793 3.207 25 H -0.191 1.191 26 H -0.198 1.198 27 H -0.201 1.201 28 H 0.100 0.900 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.185 0.815 32 H 0.260 0.740 33 H 0.259 0.741 34 H 0.149 0.851 35 H 0.136 0.864 36 H 0.188 0.812 37 H 0.180 0.820 38 H 0.164 0.836 39 H 0.152 0.848 40 H 0.069 0.931 41 H 0.043 0.957 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.530 22.997 -4.762 26.618 hybrid contribution 0.026 -1.135 0.504 1.242 sum 12.556 21.861 -4.258 25.568 Atomic orbital electron populations 1.20462 0.85522 1.04182 1.03852 1.21739 0.96604 0.86538 0.99568 1.21407 0.89947 0.99852 1.21560 1.18946 0.88112 0.88896 1.00433 1.41352 1.07081 1.03815 1.76363 1.15807 0.85410 0.80102 0.77561 1.90861 1.25234 1.73820 1.57379 1.44770 1.07545 1.05413 1.79074 1.21406 1.01893 0.78798 0.91878 0.87339 1.22562 0.97053 0.90283 1.06469 1.30429 1.15236 1.03756 1.19146 1.08654 0.75059 0.77166 0.80686 1.93583 1.50949 1.86991 1.65635 1.93568 1.60613 1.57092 1.86827 1.31057 1.14605 1.22526 1.06133 1.77171 0.99983 1.09824 1.32006 1.48759 1.01733 1.07469 1.54726 1.19225 0.94909 0.72484 0.97678 1.21407 1.47538 0.98347 0.91820 0.93284 1.25717 0.93985 0.95923 1.02173 1.69993 1.45052 1.07411 1.33129 0.85434 0.78718 0.77684 0.78820 1.19098 1.19756 1.20095 0.89981 0.87562 0.91331 0.81482 0.73956 0.74138 0.85056 0.86431 0.81245 0.81963 0.83577 0.84797 0.93059 0.95731 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.72 10.11 71.24 0.72 -2.00 16 2 C 0.09 3.56 6.93 41.39 0.29 3.85 16 3 C -0.30 -11.79 9.52 22.11 0.21 -11.58 16 4 C 0.29 11.33 8.11 133.31 1.08 12.41 16 5 N -0.63 -17.20 5.46 -321.24 -1.75 -18.95 16 6 C 0.71 17.10 8.51 179.06 1.52 18.63 16 7 O -0.60 -18.81 13.13 -4.01 -0.05 -18.86 16 8 N -0.71 -8.55 5.06 -454.46 -2.30 -10.84 16 9 C 0.17 1.50 2.89 45.69 0.13 1.63 16 10 H 0.11 1.19 7.57 -2.39 -0.02 1.17 16 11 C -0.12 -0.06 5.97 31.59 0.19 0.12 16 12 C -0.55 -0.53 7.31 72.68 0.53 0.00 16 13 S 2.40 27.00 6.11 -56.49 -0.34 26.65 16 14 O -0.97 -18.17 18.15 -127.49 -2.31 -20.48 16 15 O -0.98 -20.38 18.15 -127.49 -2.31 -22.69 16 16 C -0.61 -6.92 6.92 72.38 0.50 -6.42 16 17 N -0.36 -16.40 12.59 -54.44 -0.69 -17.09 16 18 N -0.34 -16.44 3.59 -338.43 -1.22 -17.66 16 19 C 0.28 14.47 5.99 85.63 0.51 14.98 16 20 C -0.55 -30.82 9.39 25.60 0.24 -30.58 16 21 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 22 C 0.02 1.26 5.46 84.65 0.46 1.72 16 23 N -0.92 -51.55 13.29 21.45 0.28 -51.26 16 24 Si 0.97 42.86 29.54 68.60 2.03 44.88 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 28 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.07 2.32 7.07 -2.39 -0.02 2.30 16 31 H 0.17 6.41 5.91 -2.91 -0.02 6.39 16 32 H 0.42 8.51 8.84 -92.71 -0.82 7.70 16 33 H 0.42 1.97 8.61 -92.71 -0.80 1.17 16 34 H 0.13 -0.33 8.14 -2.39 -0.02 -0.35 16 35 H 0.12 -0.37 8.12 -2.39 -0.02 -0.38 16 36 H 0.17 -0.52 8.14 -2.39 -0.02 -0.54 16 37 H 0.16 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.15 1.52 8.07 -2.39 -0.02 1.51 16 39 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.05 2.67 7.04 -2.38 -0.02 2.65 16 41 H 0.02 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -87.25 367.80 -2.81 -90.06 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -0.53 Total: 13.49 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 6.39 Total: 2.76 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -5.67 Total: -115.81 kcal Atomic # 8 Polarization: -57.35 SS G_CDS: -4.68 Total: -62.03 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: 27.00 SS G_CDS: -0.34 Total: 26.65 kcal Total: -87.25 -2.81 -90.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611266746.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.510 kcal (2) G-P(sol) polarization free energy of solvation -87.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds