Wall clock time and date at job start Wed Apr 1 2020 00:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00014 * 2 1 4 4 H 1.48504 * 109.47083 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47211 * 299.99831 * 3 2 1 6 6 H 1.48502 * 109.47150 * 59.99808 * 3 2 1 7 7 C 1.37874 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00173 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00435 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47504 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47396 * 179.97438 * 10 9 7 12 12 C 1.34774 * 120.00045 * 180.02562 * 11 10 9 13 13 O 1.21586 * 120.00096 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99998 * 180.02562 * 12 11 10 15 15 C 1.39502 * 120.00259 * 180.02562 * 14 12 11 16 16 C 1.36105 * 126.21124 * 0.02562 * 15 14 12 17 17 C 1.39768 * 107.82272 * 179.97438 * 16 15 14 18 18 N 1.30839 * 108.32329 * 359.97438 * 17 16 15 19 19 N 1.35244 * 126.21552 * 179.97438 * 15 14 12 20 20 C 1.46497 * 126.04601 * 0.06009 * 19 15 14 21 21 H 1.08998 * 110.01082 * 359.29752 * 20 19 15 22 22 C 1.53880 * 110.02686 * 120.67597 * 20 19 15 23 23 C 1.54170 * 108.70199 * 166.47146 * 22 20 19 24 24 S 1.82911 * 105.08503 * 332.08904 * 23 22 20 25 25 O 1.42102 * 109.35280 * 115.52443 * 24 23 22 26 26 O 1.42102 * 109.35630 * 248.59024 * 24 23 22 27 27 C 1.55044 * 110.02654 * 237.91471 * 20 19 15 28 28 H 0.96999 * 120.00070 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.47069 * 59.99872 * 9 7 2 30 30 H 1.08997 * 109.46973 * 299.99813 * 9 7 2 31 31 H 1.08998 * 109.46946 * 59.99760 * 10 9 7 32 32 H 1.09003 * 109.47429 * 300.00377 * 10 9 7 33 33 H 0.97002 * 119.99412 * 0.02562 * 11 10 9 34 34 H 0.97003 * 120.00045 * 359.97438 * 14 12 11 35 35 H 1.07999 * 126.08879 * 359.70460 * 16 15 14 36 36 H 1.08000 * 125.83785 * 179.97438 * 17 16 15 37 37 H 1.09002 * 109.64484 * 286.31995 * 22 20 19 38 38 H 1.09000 * 109.64589 * 46.75066 * 22 20 19 39 39 H 1.08999 * 110.31477 * 90.99477 * 23 22 20 40 40 H 1.09002 * 110.31576 * 213.08349 * 23 22 20 41 41 H 1.09001 * 110.79204 * 316.54256 * 27 20 19 42 42 H 1.09007 * 110.79067 * 80.00695 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 2.1865 -6.0980 0.0018 13 8 3.4024 -6.0981 0.0023 14 7 1.5126 -7.2652 0.0018 15 6 2.2101 -8.4734 0.0030 16 6 3.5631 -8.6207 0.0047 17 6 3.8444 -9.9898 0.0060 18 7 2.7105 -10.6426 0.0058 19 7 1.6646 -9.7109 0.0037 20 6 0.2330 -10.0220 0.0021 21 1 -0.3489 -9.1004 0.0127 22 6 -0.1236 -10.8561 -1.2409 23 6 -1.5328 -11.4513 -1.0492 24 16 -1.7379 -11.6155 0.7610 25 8 -2.7850 -10.7588 1.1958 26 8 -1.7598 -12.9930 1.1095 27 6 -0.1232 -10.8894 1.2368 28 1 -0.4850 0.8400 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 2.8718 -3.6044 0.8905 32 1 2.8719 -3.6044 -0.8894 33 1 0.5426 -4.9308 0.0011 34 1 0.5426 -7.2653 0.0018 35 1 4.2900 -7.8220 0.0009 36 1 4.8293 -10.4330 0.0071 37 1 -0.1121 -10.2191 -2.1254 38 1 0.5997 -11.6628 -1.3608 39 1 -2.2867 -10.7775 -1.4561 40 1 -1.5998 -12.4276 -1.5294 41 1 0.6218 -11.6703 1.3890 42 1 -0.2243 -10.2704 2.1283 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614259090.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:56 Heat of formation + Delta-G solvation = -9.181315 kcal Electronic energy + Delta-G solvation = -27014.192357 eV Core-core repulsion = 22931.066827 eV Total energy + Delta-G solvation = -4083.125530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76337 -39.77086 -37.63139 -37.27888 -36.53399 -35.41270 -34.75422 -32.96563 -32.04823 -30.18618 -29.67435 -28.57055 -25.78452 -24.94037 -23.08461 -22.45029 -21.08956 -20.65737 -20.26377 -19.43125 -18.84204 -17.81718 -17.36024 -16.67939 -16.47132 -16.25442 -15.93759 -15.45895 -15.23640 -14.87235 -14.80341 -14.58766 -14.48208 -13.97908 -13.80947 -13.47934 -13.35374 -13.11653 -12.87713 -12.71918 -12.61877 -12.54404 -12.36705 -11.91340 -11.44727 -11.29945 -11.26298 -11.04806 -11.03176 -10.88859 -10.67123 -10.44963 -10.01750 -9.70103 -9.34859 -9.26508 -8.80184 -8.49299 -8.09706 -6.16893 -4.20004 -0.61986 1.55721 1.65164 1.99027 2.63533 2.75081 2.96304 3.24017 3.31191 3.32143 3.32879 3.36838 3.62160 3.72218 3.88300 3.92131 4.16832 4.18839 4.38535 4.56268 4.82998 4.90019 4.99712 5.05809 5.20805 5.22034 5.33364 5.42499 5.82669 5.97714 6.15240 6.22845 6.54426 6.62034 6.71165 6.73257 6.95682 7.42591 7.50495 7.52983 7.81299 7.96607 8.19355 8.55405 8.86136 9.45526 10.94740 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.016048 B = 0.002159 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.379995 B =12963.817487 C =14344.521932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.061 0.939 9 C 0.012 3.988 10 C 0.138 3.862 11 N -0.726 5.726 12 C 0.705 3.295 13 O -0.562 6.562 14 N -0.669 5.669 15 C 0.336 3.664 16 C -0.279 4.279 17 C 0.069 3.931 18 N -0.299 5.299 19 N -0.386 5.386 20 C 0.170 3.830 21 H 0.115 0.885 22 C -0.125 4.125 23 C -0.590 4.590 24 S 2.397 3.603 25 O -0.928 6.928 26 O -0.928 6.928 27 C -0.605 4.605 28 H 0.262 0.738 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.396 0.604 34 H 0.403 0.597 35 H 0.178 0.822 36 H 0.187 0.813 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.155 0.845 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.610 -24.876 -2.011 25.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.025 4.025 10 C 0.016 3.984 11 N -0.380 5.380 12 C 0.405 3.595 13 O -0.437 6.437 14 N -0.320 5.320 15 C 0.116 3.884 16 C -0.311 4.311 17 C -0.118 4.118 18 N -0.120 5.120 19 N -0.174 5.174 20 C 0.065 3.935 21 H 0.133 0.867 22 C -0.164 4.164 23 C -0.720 4.720 24 S 2.578 3.422 25 O -0.925 6.925 26 O -0.925 6.925 27 C -0.733 4.733 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.230 0.770 34 H 0.238 0.762 35 H 0.195 0.805 36 H 0.204 0.796 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.161 0.839 40 H 0.165 0.835 41 H 0.173 0.827 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.059 -26.132 -1.457 26.350 hybrid contribution 0.299 2.112 -0.461 2.182 sum -2.760 -24.020 -1.918 24.254 Atomic orbital electron populations 1.69955 1.06118 1.26894 1.50279 1.24995 0.94904 0.99494 0.94893 0.86443 0.80171 0.83221 0.77655 1.19527 1.20915 1.20910 1.21053 0.93327 0.90190 1.51486 0.92069 1.19347 0.94231 0.90989 0.97958 1.21753 0.95786 0.79626 1.01193 1.45572 1.10173 1.04867 1.77359 1.15747 0.85590 0.79664 0.78523 1.90858 1.11176 1.85378 1.56263 1.42116 1.09590 1.02636 1.77620 1.17721 0.91157 0.79082 1.00402 1.21739 0.93101 0.97632 1.18600 1.23821 0.97255 0.92901 0.97793 1.77354 0.93902 1.12818 1.27904 1.48252 1.04803 1.02065 1.62319 1.21665 0.79259 0.99503 0.93037 0.86746 1.22249 0.94106 1.01607 0.98430 1.30509 1.04809 1.11528 1.25136 1.08923 0.77641 0.76004 0.79612 1.93666 1.51160 1.68150 1.79502 1.93646 1.86316 1.30938 1.81618 1.31176 1.23531 1.12463 1.06170 0.92825 0.95871 0.95842 0.92226 0.92218 0.77011 0.76176 0.80496 0.79596 0.88087 0.87711 0.83867 0.83522 0.82652 0.83666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -13.83 9.11 -34.44 -0.31 -14.15 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 10 C 0.14 2.69 5.61 -4.04 -0.02 2.66 16 11 N -0.73 -11.11 5.56 -65.23 -0.36 -11.48 16 12 C 0.71 10.76 8.53 -86.92 -0.74 10.02 16 13 O -0.56 -10.46 13.47 5.29 0.07 -10.39 16 14 N -0.67 -7.57 5.42 -15.85 -0.09 -7.65 16 15 C 0.34 4.06 7.66 -153.15 -1.17 2.89 16 16 C -0.28 -3.67 9.65 -39.78 -0.38 -4.06 16 17 C 0.07 0.74 12.01 -17.40 -0.21 0.53 16 18 N -0.30 -3.24 12.19 30.60 0.37 -2.87 16 19 N -0.39 -3.79 3.36 -52.41 -0.18 -3.96 16 20 C 0.17 1.06 3.41 -66.39 -0.23 0.83 16 21 H 0.11 0.45 6.85 -51.93 -0.36 0.09 16 22 C -0.12 -0.57 5.99 -25.66 -0.15 -0.72 16 23 C -0.59 -1.78 7.26 37.77 0.27 -1.50 16 24 S 2.40 13.83 6.10 -107.50 -0.66 13.18 16 25 O -0.93 -8.57 18.14 -57.73 -1.05 -9.62 16 26 O -0.93 -8.83 18.15 -57.73 -1.05 -9.88 16 27 C -0.60 -3.35 6.91 38.24 0.26 -3.09 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.40 5.00 8.49 -40.82 -0.35 4.65 16 34 H 0.40 3.06 7.56 -40.82 -0.31 2.75 16 35 H 0.18 2.70 5.82 -52.49 -0.31 2.39 16 36 H 0.19 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.54 8.02 -51.93 -0.42 0.12 16 39 H 0.14 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.15 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.16 0.92 8.01 -51.93 -0.42 0.51 16 42 H 0.15 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -37.66 367.24 -10.10 -47.76 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.49 Total: 3.12 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -2.93 Total: -4.93 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.48 Total: -50.50 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -2.02 Total: -29.88 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 13.83 SS G_CDS: -0.66 Total: 13.18 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.66 -10.10 -47.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614259090.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.581 kcal (2) G-P(sol) polarization free energy of solvation -37.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds