Wall clock time and date at job start Wed Apr 1 2020 00:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00014 * 2 1 4 4 H 1.48504 * 109.47083 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47211 * 299.99831 * 3 2 1 6 6 H 1.48502 * 109.47150 * 59.99808 * 3 2 1 7 7 C 1.37874 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00173 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00435 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47504 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47396 * 179.97438 * 10 9 7 12 12 C 1.34774 * 120.00045 * 180.02562 * 11 10 9 13 13 O 1.21586 * 120.00096 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99998 * 180.02562 * 12 11 10 15 15 C 1.39502 * 120.00259 * 180.02562 * 14 12 11 16 16 C 1.36105 * 126.21124 * 0.02562 * 15 14 12 17 17 C 1.39768 * 107.82272 * 179.97438 * 16 15 14 18 18 N 1.30839 * 108.32329 * 359.97438 * 17 16 15 19 19 N 1.35244 * 126.21552 * 179.97438 * 15 14 12 20 20 C 1.46497 * 126.04601 * 0.06009 * 19 15 14 21 21 H 1.08998 * 110.01082 * 359.29752 * 20 19 15 22 22 C 1.53880 * 110.02686 * 120.67597 * 20 19 15 23 23 C 1.54170 * 108.70199 * 166.47146 * 22 20 19 24 24 S 1.82911 * 105.08503 * 332.08904 * 23 22 20 25 25 O 1.42102 * 109.35280 * 115.52443 * 24 23 22 26 26 O 1.42102 * 109.35630 * 248.59024 * 24 23 22 27 27 C 1.55044 * 110.02654 * 237.91471 * 20 19 15 28 28 H 0.96999 * 120.00070 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.47069 * 59.99872 * 9 7 2 30 30 H 1.08997 * 109.46973 * 299.99813 * 9 7 2 31 31 H 1.08998 * 109.46946 * 59.99760 * 10 9 7 32 32 H 1.09003 * 109.47429 * 300.00377 * 10 9 7 33 33 H 0.97002 * 119.99412 * 0.02562 * 11 10 9 34 34 H 0.97003 * 120.00045 * 359.97438 * 14 12 11 35 35 H 1.07999 * 126.08879 * 359.70460 * 16 15 14 36 36 H 1.08000 * 125.83785 * 179.97438 * 17 16 15 37 37 H 1.09002 * 109.64484 * 286.31995 * 22 20 19 38 38 H 1.09000 * 109.64589 * 46.75066 * 22 20 19 39 39 H 1.08999 * 110.31477 * 90.99477 * 23 22 20 40 40 H 1.09002 * 110.31576 * 213.08349 * 23 22 20 41 41 H 1.09001 * 110.79204 * 316.54256 * 27 20 19 42 42 H 1.09007 * 110.79067 * 80.00695 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 2.1865 -6.0980 0.0018 13 8 3.4024 -6.0981 0.0023 14 7 1.5126 -7.2652 0.0018 15 6 2.2101 -8.4734 0.0030 16 6 3.5631 -8.6207 0.0047 17 6 3.8444 -9.9898 0.0060 18 7 2.7105 -10.6426 0.0058 19 7 1.6646 -9.7109 0.0037 20 6 0.2330 -10.0220 0.0021 21 1 -0.3489 -9.1004 0.0127 22 6 -0.1236 -10.8561 -1.2409 23 6 -1.5328 -11.4513 -1.0492 24 16 -1.7379 -11.6155 0.7610 25 8 -2.7850 -10.7588 1.1958 26 8 -1.7598 -12.9930 1.1095 27 6 -0.1232 -10.8894 1.2368 28 1 -0.4850 0.8400 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 2.8718 -3.6044 0.8905 32 1 2.8719 -3.6044 -0.8894 33 1 0.5426 -4.9308 0.0011 34 1 0.5426 -7.2653 0.0018 35 1 4.2900 -7.8220 0.0009 36 1 4.8293 -10.4330 0.0071 37 1 -0.1121 -10.2191 -2.1254 38 1 0.5997 -11.6628 -1.3608 39 1 -2.2867 -10.7775 -1.4561 40 1 -1.5998 -12.4276 -1.5294 41 1 0.6218 -11.6703 1.3890 42 1 -0.2243 -10.2704 2.1283 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614259090.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:55 Heat of formation + Delta-G solvation = -38.593298 kcal Electronic energy + Delta-G solvation = -27015.467757 eV Core-core repulsion = 22931.066827 eV Total energy + Delta-G solvation = -4084.400930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.65686 -40.94298 -38.22486 -37.80132 -37.12924 -36.84235 -35.96269 -34.83992 -32.67731 -31.70095 -30.35153 -29.65710 -26.75999 -26.24330 -23.78602 -23.63712 -22.64412 -21.59490 -21.20952 -19.93078 -19.69171 -18.92097 -18.41161 -17.82629 -17.31409 -17.05216 -16.83315 -16.54037 -16.47889 -16.05821 -15.68613 -15.49235 -15.26629 -15.14722 -14.92556 -14.74641 -14.29379 -14.04349 -13.67987 -13.41609 -13.33851 -13.21431 -13.20006 -13.08856 -12.96506 -12.50993 -12.35779 -12.31896 -12.06847 -12.01493 -11.80118 -11.57892 -11.48207 -11.39641 -11.13274 -10.59918 -10.19098 -10.00111 -9.08695 -8.23030 -6.32281 -1.08155 0.68485 0.79617 1.42320 1.43022 1.45361 1.56581 1.77796 1.79531 2.17346 2.41937 2.51524 2.86448 3.04644 3.12841 3.13539 3.26962 3.48672 3.56220 3.90854 3.96880 4.17987 4.33235 4.47581 4.53336 4.54079 4.59124 4.75179 4.78337 4.86714 4.91027 4.94852 5.10742 5.27603 5.50500 5.61768 5.68721 5.77297 5.82186 5.99315 6.18085 6.63213 6.81501 6.89941 7.34789 7.37295 8.88905 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.016048 B = 0.002159 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.379995 B =12963.817487 C =14344.521932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.022 3.978 10 C 0.160 3.840 11 N -0.719 5.719 12 C 0.708 3.292 13 O -0.596 6.596 14 N -0.650 5.650 15 C 0.326 3.674 16 C -0.305 4.305 17 C 0.069 3.931 18 N -0.302 5.302 19 N -0.375 5.375 20 C 0.152 3.848 21 H 0.141 0.859 22 C -0.124 4.124 23 C -0.561 4.561 24 S 2.409 3.591 25 O -0.966 6.966 26 O -0.971 6.971 27 C -0.600 4.600 28 H 0.265 0.735 29 H 0.012 0.988 30 H 0.010 0.990 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.411 0.589 34 H 0.423 0.577 35 H 0.153 0.847 36 H 0.214 0.786 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.168 0.832 40 H 0.167 0.833 41 H 0.152 0.848 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.948 -25.506 -2.960 25.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.787 3.213 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.016 4.016 10 C 0.036 3.964 11 N -0.374 5.374 12 C 0.408 3.592 13 O -0.474 6.474 14 N -0.302 5.302 15 C 0.105 3.895 16 C -0.337 4.337 17 C -0.117 4.117 18 N -0.123 5.123 19 N -0.163 5.163 20 C 0.048 3.952 21 H 0.158 0.842 22 C -0.163 4.163 23 C -0.693 4.693 24 S 2.595 3.405 25 O -0.963 6.963 26 O -0.968 6.968 27 C -0.730 4.730 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.247 0.753 34 H 0.262 0.738 35 H 0.171 0.829 36 H 0.230 0.770 37 H 0.133 0.867 38 H 0.119 0.881 39 H 0.186 0.814 40 H 0.185 0.815 41 H 0.170 0.830 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.466 -26.823 -2.373 27.150 hybrid contribution 0.413 2.235 -0.200 2.281 sum -3.053 -24.588 -2.572 24.910 Atomic orbital electron populations 1.70049 1.07462 1.27866 1.51235 1.25821 0.95748 1.02966 0.94585 0.85443 0.79090 0.79052 0.77752 1.18903 1.20391 1.20480 1.21492 0.93676 0.91831 1.51128 0.92153 1.19150 0.94295 0.91504 0.96615 1.21192 0.94636 0.80209 1.00343 1.45167 1.10745 1.03851 1.77637 1.15718 0.85122 0.80295 0.78090 1.90860 1.12891 1.86051 1.57584 1.41668 1.10435 1.01376 1.76686 1.17698 0.91214 0.79789 1.00788 1.21674 0.93539 0.98249 1.20246 1.24190 0.98468 0.91872 0.97144 1.77326 0.94175 1.13169 1.27648 1.48424 1.05905 1.00877 1.61085 1.22203 0.77502 1.01338 0.94120 0.84181 1.22270 0.94610 1.01503 0.97901 1.30349 1.04609 1.13307 1.21067 1.08378 0.76829 0.74383 0.80934 1.93615 1.52842 1.68584 1.81220 1.93590 1.86828 1.33087 1.83291 1.31107 1.23025 1.12355 1.06470 0.92618 0.97006 0.97125 0.93189 0.93029 0.75265 0.73842 0.82943 0.76996 0.86706 0.88126 0.81365 0.81507 0.83029 0.83033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.50 13.29 21.45 0.28 -52.21 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.96 42.31 29.54 68.60 2.03 44.34 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 6 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.54 -28.86 9.11 25.60 0.23 -28.63 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.02 1.03 5.09 29.85 0.15 1.18 16 10 C 0.16 6.21 5.61 86.38 0.48 6.70 16 11 N -0.72 -21.45 5.56 -478.54 -2.66 -24.12 16 12 C 0.71 21.10 8.53 179.06 1.53 22.63 16 13 O -0.60 -22.38 13.47 -3.99 -0.05 -22.43 16 14 N -0.65 -13.66 5.42 -322.31 -1.75 -15.41 16 15 C 0.33 7.45 7.66 131.31 1.01 8.46 16 16 C -0.30 -7.95 9.65 22.14 0.21 -7.74 16 17 C 0.07 1.42 12.01 85.21 1.02 2.44 16 18 N -0.30 -6.06 12.19 -57.09 -0.70 -6.76 16 19 N -0.37 -6.62 3.36 -319.74 -1.07 -7.69 16 20 C 0.15 1.50 3.41 45.99 0.16 1.65 16 21 H 0.14 0.62 6.85 -2.39 -0.02 0.61 16 22 C -0.12 -0.71 5.99 31.29 0.19 -0.53 16 23 C -0.56 -1.45 7.26 72.38 0.53 -0.93 16 24 S 2.41 24.63 6.10 -56.49 -0.34 24.28 16 25 O -0.97 -16.94 18.14 -127.47 -2.31 -19.25 16 26 O -0.97 -18.08 18.15 -127.47 -2.31 -20.39 16 27 C -0.60 -5.73 6.91 72.68 0.50 -5.23 16 28 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 29 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.41 9.81 8.49 -92.71 -0.79 9.03 16 34 H 0.42 5.33 7.56 -92.71 -0.70 4.63 16 35 H 0.15 4.81 5.82 -2.91 -0.02 4.79 16 36 H 0.21 2.86 8.06 -2.91 -0.02 2.84 16 37 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.10 0.74 8.02 -2.39 -0.02 0.72 16 39 H 0.17 -0.24 8.14 -2.39 -0.02 -0.26 16 40 H 0.17 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.15 1.63 8.01 -2.39 -0.02 1.61 16 42 H 0.15 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -81.90 367.24 -2.83 -84.73 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -0.41 Total: 14.02 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 6.48 Total: 0.88 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -5.89 Total: -106.18 kcal Atomic # 8 Polarization: -57.39 SS G_CDS: -4.68 Total: -62.07 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 24.63 SS G_CDS: -0.34 Total: 24.28 kcal Total: -81.90 -2.83 -84.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614259090.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.135 kcal (2) G-P(sol) polarization free energy of solvation -81.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds