Wall clock time and date at job start Wed Apr 1 2020 01:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99665 * 2 1 4 4 H 1.48502 * 109.46846 * 269.99857 * 3 2 1 5 5 H 1.48494 * 109.47093 * 30.00061 * 3 2 1 6 6 H 1.48500 * 109.46909 * 150.00296 * 3 2 1 7 7 C 1.37874 * 120.00547 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99489 * 359.97438 * 7 2 1 9 9 C 1.50692 * 120.00526 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47605 * 179.97438 * 9 7 2 11 11 C 1.52990 * 109.47183 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.46872 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00019 * 179.97438 * 12 11 10 14 14 O 1.21592 * 120.00049 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00328 * 179.97438 * 13 12 11 16 16 C 1.39083 * 120.00441 * 180.02562 * 15 13 12 17 17 N 1.29889 * 125.65158 * 0.02875 * 16 15 13 18 18 N 1.26245 * 117.65903 * 179.97438 * 17 16 15 19 19 C 1.29504 * 116.58426 * 0.02562 * 18 17 16 20 20 C 1.50700 * 126.14466 * 179.74058 * 19 18 17 21 21 C 1.52997 * 109.47321 * 90.02518 * 20 19 18 22 22 C 1.53003 * 109.47072 * 180.02562 * 21 20 19 23 23 C 1.50700 * 109.46984 * 179.97438 * 22 21 20 24 24 O 1.20823 * 120.00270 * 359.97438 * 23 22 21 25 25 O 1.34235 * 120.00003 * 179.97438 * 23 22 21 26 26 S 1.71306 * 125.65691 * 179.97438 * 16 15 13 27 27 H 0.96995 * 119.99793 * 359.97438 * 1 2 3 28 28 H 1.09009 * 109.46888 * 59.99759 * 9 7 2 29 29 H 1.09001 * 109.47229 * 300.00369 * 9 7 2 30 30 H 1.09005 * 109.46363 * 60.00271 * 10 9 7 31 31 H 1.08997 * 109.47027 * 300.00551 * 10 9 7 32 32 H 1.08997 * 109.47329 * 60.00574 * 11 10 9 33 33 H 1.08997 * 109.47656 * 300.00248 * 11 10 9 34 34 H 0.96991 * 120.00115 * 0.02562 * 12 11 10 35 35 H 0.97005 * 119.99847 * 0.02562 * 15 13 12 36 36 H 1.09005 * 109.46818 * 210.02053 * 20 19 18 37 37 H 1.08999 * 109.47358 * 330.02033 * 20 19 18 38 38 H 1.09005 * 109.46795 * 299.99549 * 21 20 19 39 39 H 1.08991 * 109.47588 * 59.99690 * 21 20 19 40 40 H 1.08996 * 109.46665 * 299.99614 * 22 21 20 41 41 H 1.09003 * 109.47187 * 59.99751 * 22 21 20 42 42 H 0.96692 * 116.99773 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 6 5.5516 -2.6363 -0.0022 12 7 6.0400 -4.0176 -0.0027 13 6 7.3651 -4.2638 -0.0043 14 8 8.1552 -3.3396 -0.0049 15 7 7.8144 -5.5344 -0.0043 16 6 9.1818 -5.7886 -0.0054 17 7 10.1190 -4.8892 -0.0060 18 7 11.3161 -5.2902 -0.0065 19 6 11.4977 -6.5724 -0.0069 20 6 12.8273 -7.2818 -0.0130 21 6 13.2840 -7.5219 1.4273 22 6 14.6342 -8.2415 1.4210 23 6 15.0843 -8.4774 2.8398 24 8 14.3961 -8.1075 3.7614 25 8 16.2498 -9.0985 3.0797 26 16 9.9093 -7.3395 -0.0049 27 1 -0.4849 0.8400 0.0004 28 1 3.8752 -0.6802 0.8889 29 1 3.8746 -0.6799 -0.8911 30 1 3.6580 -3.1504 -0.8908 31 1 3.6587 -3.1501 0.8892 32 1 5.9157 -2.1222 0.8873 33 1 5.9143 -2.1228 -0.8926 34 1 5.4098 -4.7548 -0.0026 35 1 7.1841 -6.2718 -0.0034 36 1 12.7265 -8.2381 -0.5263 37 1 13.5644 -6.6677 -0.5304 38 1 13.3848 -6.5656 1.9406 39 1 12.5470 -8.1360 1.9446 40 1 14.5338 -9.1977 0.9076 41 1 15.3711 -7.6270 0.9038 42 1 16.4964 -9.2269 4.0058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739069379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:16 Heat of formation + Delta-G solvation = -66.466061 kcal Electronic energy + Delta-G solvation = -25122.267595 eV Core-core repulsion = 21036.658011 eV Total energy + Delta-G solvation = -4085.609583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.57685 -40.77408 -40.12198 -36.90162 -36.29592 -35.64477 -35.04507 -33.40557 -31.77835 -31.24452 -28.80543 -27.29520 -25.91227 -23.96253 -23.07334 -21.91778 -21.29618 -20.68726 -20.25413 -19.57031 -18.60756 -18.03268 -17.73197 -17.00186 -16.82262 -16.65630 -16.45111 -15.49294 -15.25431 -15.19792 -14.69939 -14.37404 -14.31223 -13.91995 -13.79502 -13.60693 -13.05669 -12.94079 -12.72371 -12.32664 -12.17375 -12.06172 -11.97472 -11.53022 -11.46886 -11.14949 -11.13802 -10.91208 -10.89584 -10.59735 -10.17840 -10.02753 -9.94070 -9.85957 -9.72553 -9.25964 -9.19463 -8.83752 -8.57402 -6.08427 -4.07542 0.16800 0.19154 0.85262 1.66486 2.18689 2.30689 2.50452 3.09694 3.30814 3.38630 3.43040 3.61019 3.86083 4.18943 4.31019 4.41997 4.43090 4.53067 4.68790 4.84907 4.95443 5.00764 5.19872 5.25846 5.40952 5.45185 5.59989 5.62422 5.70649 5.94852 5.96709 6.15372 6.31894 6.38869 6.64089 6.73114 7.19221 7.32587 7.33658 7.61574 7.73644 8.27828 8.47059 8.48145 8.94880 9.53821 11.04694 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.029719 B = 0.001444 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.923058 B =19385.034605 C =19665.995503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.131 3.869 12 N -0.729 5.729 13 C 0.692 3.308 14 O -0.525 6.525 15 N -0.637 5.637 16 C 0.259 3.741 17 N -0.270 5.270 18 N -0.219 5.219 19 C -0.002 4.002 20 C -0.032 4.032 21 C -0.109 4.109 22 C -0.112 4.112 23 C 0.477 3.523 24 O -0.513 6.513 25 O -0.520 6.520 26 S 0.100 5.900 27 H 0.264 0.736 28 H 0.020 0.980 29 H 0.015 0.985 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.398 0.602 35 H 0.421 0.579 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.323 -25.592 0.572 39.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.008 3.992 12 N -0.385 5.385 13 C 0.389 3.611 14 O -0.395 6.395 15 N -0.292 5.292 16 C -0.113 4.113 17 N -0.113 5.113 18 N -0.055 5.055 19 C -0.285 4.285 20 C -0.073 4.073 21 C -0.148 4.148 22 C -0.150 4.150 23 C 0.319 3.681 24 O -0.400 6.400 25 O -0.332 6.332 26 S 0.339 5.661 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.232 0.768 35 H 0.258 0.742 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 30.497 -23.977 0.409 38.796 hybrid contribution -0.368 0.092 0.642 0.746 sum 30.129 -23.885 1.051 38.462 Atomic orbital electron populations 1.69908 1.06330 1.27003 1.50900 1.25015 0.94734 0.99232 0.94381 0.86786 0.80441 0.83517 0.78637 1.20215 1.21338 1.18846 1.21075 0.89250 0.94526 1.51290 0.91005 1.19505 0.97302 0.91280 0.96817 1.21724 0.90259 1.01256 1.01853 1.21669 0.95989 0.79099 1.02401 1.45335 1.03797 1.10814 1.78521 1.16036 0.83840 0.81996 0.79185 1.91104 1.54178 1.41257 1.52995 1.42137 1.01765 1.09443 1.75828 1.25606 0.91197 0.92931 1.01523 1.71596 0.92853 1.27072 1.19828 1.71437 1.11614 1.10493 1.11941 1.29726 0.98296 0.92392 1.08077 1.20126 0.89164 1.00044 0.98008 1.21481 0.95083 1.02485 0.95761 1.21348 0.98925 1.04225 0.90487 1.23509 0.78100 0.73510 0.93001 1.90775 1.54631 1.47751 1.46861 1.84525 1.39438 1.72514 1.36718 1.84702 1.02715 1.06821 1.71883 0.92666 0.96194 0.96625 0.91999 0.91961 0.91436 0.91448 0.76811 0.74151 0.88825 0.87674 0.89780 0.90350 0.87158 0.86988 0.72947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -14.56 9.66 -34.45 -0.33 -14.89 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.37 16 10 C -0.11 -2.01 5.27 -26.73 -0.14 -2.15 16 11 C 0.13 2.10 5.67 -4.04 -0.02 2.07 16 12 N -0.73 -9.36 5.56 -65.23 -0.36 -9.72 16 13 C 0.69 10.11 8.53 -86.92 -0.74 9.36 16 14 O -0.53 -10.31 15.02 5.28 0.08 -10.23 16 15 N -0.64 -6.79 5.41 -17.32 -0.09 -6.88 16 16 C 0.26 3.12 8.14 -87.05 -0.71 2.41 16 17 N -0.27 -4.23 9.73 29.97 0.29 -3.94 16 18 N -0.22 -2.93 11.65 33.58 0.39 -2.54 16 19 C 0.00 -0.02 7.05 -13.26 -0.09 -0.11 16 20 C -0.03 -0.13 5.84 -27.88 -0.16 -0.30 16 21 C -0.11 -0.52 4.49 -26.73 -0.12 -0.64 16 22 C -0.11 -0.29 5.81 -27.88 -0.16 -0.45 16 23 C 0.48 2.64 8.33 36.01 0.30 2.94 16 24 O -0.51 -4.94 16.74 -18.75 -0.31 -5.25 16 25 O -0.52 -1.91 13.42 -39.27 -0.53 -2.44 16 26 S 0.10 0.75 23.31 -107.50 -2.51 -1.76 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 28 H 0.02 0.46 7.20 -51.92 -0.37 0.09 16 29 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.40 3.71 8.49 -40.82 -0.35 3.36 16 35 H 0.42 2.54 8.84 -40.82 -0.36 2.17 16 36 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 39 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 40 H 0.11 0.03 8.14 -51.93 -0.42 -0.39 16 41 H 0.11 0.11 8.14 -51.93 -0.42 -0.31 16 42 H 0.41 0.09 9.10 45.56 0.41 0.50 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -40.62 380.16 -8.47 -49.09 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -4.87 Total: -2.01 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -2.40 Total: -0.27 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 1.00 Total: -49.87 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.76 Total: -17.92 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.51 Total: -1.76 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -40.62 -8.47 -49.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739069379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.378 kcal (2) G-P(sol) polarization free energy of solvation -40.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds