Wall clock time and date at job start Wed Apr 1 2020 01:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.34375 * 126.43051 * 2 1 4 4 C 1.34470 * 108.19072 * 180.30935 * 3 2 1 5 5 C 1.47829 * 125.49839 * 179.75436 * 4 3 2 6 6 C 1.41106 * 126.35788 * 359.68894 * 5 4 3 7 7 N 1.30556 * 108.09890 * 179.81711 * 6 5 4 8 8 N 1.39956 * 108.82725 * 0.44052 * 7 6 5 9 9 C 1.46496 * 125.81816 * 179.71216 * 8 7 6 10 10 C 1.34663 * 108.36842 * 359.71530 * 8 7 6 11 11 N 1.30939 * 109.00410 * 359.72689 * 4 3 2 12 12 C 1.35965 * 108.39670 * 0.02562 * 11 4 3 13 13 C 1.47413 * 126.36698 * 179.97438 * 12 11 4 14 14 O 1.21643 * 119.99848 * 180.02562 * 13 12 11 15 15 N 1.34773 * 120.00419 * 0.02562 * 13 12 11 16 16 C 1.40540 * 120.00329 * 179.97438 * 15 13 12 17 17 C 1.40665 * 126.08410 * 0.02710 * 16 15 13 18 18 N 1.30901 * 108.39014 * 179.73782 * 17 16 15 19 19 N 1.40070 * 108.40965 * 359.97438 * 18 17 16 20 20 C 1.37316 * 126.06886 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99904 * 179.97438 * 20 19 18 22 22 C 1.38984 * 120.00090 * 359.97438 * 20 19 18 23 23 N 1.31294 * 119.99914 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00189 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47297 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47523 * 120.00015 * 24 22 20 27 27 H 1.48499 * 109.47194 * 239.99924 * 24 22 20 28 28 C 1.35691 * 126.08269 * 179.71164 * 16 15 13 29 29 H 1.09011 * 109.47230 * 270.14106 * 1 2 3 30 30 H 1.08996 * 109.47661 * 30.13988 * 1 2 3 31 31 H 1.08995 * 109.47468 * 150.14394 * 1 2 3 32 32 H 1.07997 * 125.94759 * 359.97438 * 6 5 4 33 33 H 1.08998 * 109.47414 * 270.00367 * 9 8 7 34 34 H 1.09005 * 109.46879 * 30.00627 * 9 8 7 35 35 H 1.08999 * 109.47027 * 150.00275 * 9 8 7 36 36 H 1.08003 * 126.28560 * 179.97438 * 10 8 7 37 37 H 0.97007 * 119.99643 * 359.97438 * 15 13 12 38 38 H 1.08001 * 125.80452 * 359.70862 * 17 16 15 39 39 H 0.97000 * 119.99834 * 180.02562 * 23 22 20 40 40 H 1.07996 * 126.24809 * 0.23280 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3049 1.0812 0.0000 4 6 3.5820 0.6603 -0.0069 5 6 4.7740 1.5347 -0.0144 6 6 4.7763 2.9457 -0.0218 7 7 6.0179 3.3492 -0.0231 8 7 6.8569 2.2290 -0.0268 9 6 8.3216 2.2550 -0.0351 10 6 6.0884 1.1232 -0.0214 11 7 3.5995 -0.6490 -0.0053 12 6 2.3152 -1.0953 0.0022 13 6 1.8792 -2.5034 0.0059 14 8 0.6930 -2.7728 0.0122 15 7 2.7947 -3.4925 0.0022 16 6 2.3790 -4.8350 0.0063 17 6 1.0480 -5.2901 0.0136 18 7 1.0592 -6.5990 0.0098 19 7 2.3918 -7.0301 -0.0007 20 6 2.8195 -8.3349 -0.0079 21 1 3.8765 -8.5567 -0.0162 22 6 1.8922 -9.3702 -0.0044 23 7 0.6073 -9.1005 0.0052 24 14 2.4739 -11.1452 -0.0135 25 1 3.9585 -11.1796 -0.0244 26 1 1.9712 -11.8372 1.2005 27 1 1.9545 -11.8302 -1.2244 28 6 3.1901 -5.9227 -0.0022 29 1 -0.3634 0.0025 1.0278 30 1 -0.3634 0.8887 -0.5160 31 1 -0.3634 -0.8912 -0.5116 32 1 3.9031 3.5811 -0.0234 33 1 8.6791 2.2605 -1.0648 34 1 8.6720 3.1517 0.4760 35 1 8.7036 1.3720 0.4774 36 1 6.4385 0.1015 -0.0229 37 1 3.7407 -3.2776 -0.0032 38 1 0.1668 -4.6657 0.0215 39 1 -0.0399 -9.8230 0.0079 40 1 4.2700 -5.9140 -0.0097 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752408104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:45 Heat of formation + Delta-G solvation = 156.677579 kcal Electronic energy + Delta-G solvation = -27723.932381 eV Core-core repulsion = 23544.847831 eV Total energy + Delta-G solvation = -4179.084549 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.123 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.31582 -41.53408 -39.81014 -38.41909 -34.82916 -34.21914 -33.99653 -33.07819 -32.54382 -30.66443 -30.21905 -28.20118 -27.74819 -26.42925 -24.92613 -23.71072 -22.40496 -21.63860 -20.94928 -20.77746 -19.90577 -19.35176 -18.16534 -17.44149 -16.95112 -16.67788 -15.90058 -15.70232 -15.40931 -15.31911 -14.94471 -14.54600 -14.40252 -14.10932 -13.83146 -13.38476 -13.35972 -13.22273 -13.12286 -12.97987 -12.93471 -12.86171 -12.38234 -11.66810 -11.39731 -11.38928 -11.27345 -11.24470 -10.92839 -10.72325 -10.49588 -10.14443 -9.98669 -9.78346 -9.34607 -9.14666 -8.78883 -8.18026 -8.02824 -6.65277 -6.53956 -4.20116 0.88088 1.42100 1.79093 1.86701 2.46293 2.77640 2.96954 3.06439 3.12405 3.42628 3.51474 3.80498 3.83215 3.95920 4.06857 4.42310 4.49889 4.60070 4.65965 4.71395 4.77266 4.92711 5.04365 5.04858 5.14467 5.18006 5.34019 5.51073 5.54206 5.88454 5.95046 6.09210 6.15409 6.28690 6.37716 6.50384 6.92659 6.98129 7.11413 7.14863 7.25954 7.52869 7.88484 8.22704 8.32013 8.64524 8.87351 9.40188 9.69403 10.42177 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.016917 B = 0.002176 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.720066 B =12862.380568 C =14496.620047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.030 3.970 3 O -0.195 6.195 4 C 0.278 3.722 5 C -0.176 4.176 6 C 0.085 3.915 7 N -0.295 5.295 8 N -0.366 5.366 9 C 0.098 3.902 10 C 0.121 3.879 11 N -0.461 5.461 12 C -0.054 4.054 13 C 0.584 3.416 14 O -0.532 6.532 15 N -0.603 5.603 16 C -0.059 4.059 17 C -0.031 4.031 18 N -0.260 5.260 19 N -0.143 5.143 20 C -0.322 4.322 21 H 0.117 0.883 22 C 0.045 3.955 23 N -0.770 5.770 24 Si 0.935 3.065 25 H -0.263 1.263 26 H -0.274 1.274 27 H -0.274 1.274 28 C -0.081 4.081 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.194 0.806 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.193 0.807 37 H 0.405 0.595 38 H 0.177 0.823 39 H 0.274 0.726 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.545 21.328 -0.064 24.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.026 4.026 3 O -0.083 6.083 4 C 0.072 3.928 5 C -0.190 4.190 6 C -0.103 4.103 7 N -0.115 5.115 8 N -0.145 5.145 9 C -0.042 4.042 10 C -0.030 4.030 11 N -0.192 5.192 12 C -0.175 4.175 13 C 0.369 3.631 14 O -0.410 6.410 15 N -0.243 5.243 16 C -0.165 4.165 17 C -0.207 4.207 18 N -0.091 5.091 19 N 0.090 4.910 20 C -0.454 4.454 21 H 0.134 0.866 22 C -0.172 4.172 23 N -0.396 5.396 24 Si 0.759 3.241 25 H -0.187 1.187 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.232 4.232 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.134 0.866 32 H 0.210 0.790 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.210 0.790 37 H 0.239 0.761 38 H 0.194 0.806 39 H 0.085 0.915 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 11.274 20.605 -0.060 23.487 hybrid contribution 0.346 -0.172 0.007 0.387 sum 11.620 20.433 -0.054 23.506 Atomic orbital electron populations 1.20585 0.82439 1.05326 1.04596 1.23662 0.94931 0.82911 1.01104 1.84331 1.17316 1.36118 1.70529 1.22381 0.81696 0.88059 1.00695 1.17260 0.87860 0.91295 1.22558 1.24035 0.95660 0.93079 0.97498 1.77270 1.00824 1.08584 1.24823 1.48413 1.07317 1.03620 1.55170 1.22018 0.72969 1.05190 1.04072 1.22839 0.89640 0.93710 0.96807 1.71001 1.21625 1.07918 1.18649 1.21540 0.88434 0.95752 1.11775 1.16483 0.85584 0.81899 0.79096 1.90671 1.16158 1.82389 1.51805 1.42257 1.09138 1.03612 1.69319 1.17272 0.93799 0.81644 1.23789 1.24126 0.95874 0.92846 1.07821 1.78247 0.95982 1.09202 1.25676 1.44557 1.03269 1.04069 1.39142 1.19914 0.94218 0.77987 1.53287 0.86579 1.25644 0.94894 1.01084 0.95533 1.70228 1.00596 1.33356 1.35461 0.85765 0.79400 0.80525 0.78451 1.18705 1.19931 1.19936 1.21263 0.95886 0.86313 1.19732 0.89164 0.90496 0.86624 0.78950 0.90059 0.88783 0.88775 0.78978 0.76117 0.80592 0.91533 0.83630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 9.87 36.00 0.36 -0.47 16 2 C 0.03 0.42 7.43 -35.07 -0.26 0.16 16 3 O -0.20 -2.55 10.75 5.06 0.05 -2.50 16 4 C 0.28 3.63 8.10 -14.01 -0.11 3.52 16 5 C -0.18 -1.86 6.12 -105.07 -0.64 -2.50 16 6 C 0.09 0.80 12.01 -17.01 -0.20 0.59 16 7 N -0.30 -2.88 12.51 30.84 0.39 -2.50 16 8 N -0.37 -2.84 3.99 -67.58 -0.27 -3.11 16 9 C 0.10 0.33 11.45 59.84 0.69 1.01 16 10 C 0.12 1.02 11.47 -16.49 -0.19 0.83 16 11 N -0.46 -6.83 11.04 -8.27 -0.09 -6.92 16 12 C -0.05 -0.88 6.99 -83.06 -0.58 -1.46 16 13 C 0.58 11.26 7.78 -12.53 -0.10 11.16 16 14 O -0.53 -11.29 11.93 5.24 0.06 -11.23 16 15 N -0.60 -11.84 5.46 -10.97 -0.06 -11.90 16 16 C -0.06 -1.41 6.90 -83.86 -0.58 -1.99 16 17 C -0.03 -0.82 10.85 -17.03 -0.18 -1.01 16 18 N -0.26 -7.61 10.40 30.80 0.32 -7.29 16 19 N -0.14 -3.96 3.74 -11.41 -0.04 -4.00 16 20 C -0.32 -8.57 10.25 -14.82 -0.15 -8.72 16 21 H 0.12 2.77 7.83 -52.48 -0.41 2.36 16 22 C 0.05 1.18 5.50 -17.51 -0.10 1.08 16 23 N -0.77 -21.59 11.81 55.49 0.66 -20.94 16 24 Si 0.93 19.00 29.55 -169.99 -5.02 13.98 16 25 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 26 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 27 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 28 C -0.08 -1.95 11.49 -16.38 -0.19 -2.14 16 29 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.12 1.50 6.47 -51.93 -0.34 1.17 16 32 H 0.19 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 36 H 0.19 1.19 8.06 -52.48 -0.42 0.77 16 37 H 0.40 6.83 8.55 -40.82 -0.35 6.48 16 38 H 0.18 4.55 5.91 -52.49 -0.31 4.24 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.15 2.94 8.06 -52.49 -0.42 2.52 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -35.97 360.66 -4.74 -40.71 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -3.92 Total: 10.18 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -2.25 Total: 0.08 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: 0.90 Total: -56.66 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.12 Total: -13.72 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.97 -4.74 -40.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752408104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.390 kcal (2) G-P(sol) polarization free energy of solvation -35.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds