Wall clock time and date at job start Wed Apr 1 2020 01:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39765 * 125.84213 * 2 1 4 4 C 1.36095 * 107.82598 * 179.73878 * 3 2 1 5 5 N 1.39507 * 126.21346 * 180.02562 * 4 3 2 6 6 C 1.34778 * 120.00120 * 359.97116 * 5 4 3 7 7 O 1.21593 * 119.99764 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00378 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99959 * 179.97438 * 8 6 5 10 10 C 1.50705 * 109.46990 * 179.97438 * 9 8 6 11 11 H 1.08007 * 119.99898 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00161 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99680 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00081 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47288 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47031 * 119.99872 * 14 12 10 17 17 H 1.48491 * 109.47195 * 240.00081 * 14 12 10 18 18 N 1.35248 * 107.57545 * 359.97438 * 4 3 2 19 19 C 1.46493 * 126.04712 * 180.02562 * 18 4 3 20 20 H 1.09000 * 110.01299 * 358.62596 * 19 18 4 21 21 C 1.53882 * 110.02873 * 120.00096 * 19 18 4 22 22 C 1.54161 * 108.70673 * 166.46916 * 21 19 18 23 23 S 1.82922 * 105.08529 * 332.09479 * 22 21 19 24 24 O 1.42103 * 109.35348 * 115.52170 * 23 22 21 25 25 O 1.42098 * 109.35269 * 248.72216 * 23 22 21 26 26 C 1.55048 * 110.02827 * 237.19246 * 19 18 4 27 27 N 1.30848 * 125.83702 * 179.69062 * 2 1 3 28 28 H 1.09007 * 109.47155 * 90.00412 * 1 2 3 29 29 H 1.09002 * 109.47333 * 210.00165 * 1 2 3 30 30 H 1.08995 * 109.47409 * 330.00137 * 1 2 3 31 31 H 1.08003 * 126.08092 * 359.75310 * 3 2 1 32 32 H 0.97004 * 120.00166 * 179.97438 * 5 4 3 33 33 H 0.97004 * 119.99910 * 359.97438 * 8 6 5 34 34 H 1.08999 * 109.46908 * 299.99294 * 9 8 6 35 35 H 1.08998 * 109.47151 * 59.99986 * 9 8 6 36 36 H 0.97001 * 119.99393 * 180.02562 * 13 12 10 37 37 H 1.08999 * 109.64648 * 286.32937 * 21 19 18 38 38 H 1.09002 * 109.64136 * 46.61755 * 21 19 18 39 39 H 1.08999 * 110.31567 * 90.99506 * 22 21 19 40 40 H 1.08995 * 110.32224 * 213.09045 * 22 21 19 41 41 H 1.08998 * 110.79022 * 316.54213 * 26 19 18 42 42 H 1.09001 * 110.78959 * 80.00864 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1330 0.0000 4 6 3.6196 0.7121 0.0059 5 7 4.7515 1.5275 0.0084 6 6 4.6161 2.8685 0.0043 7 8 3.5072 3.3675 -0.0021 8 7 5.7095 3.6563 0.0062 9 6 5.5622 5.1139 0.0012 10 6 6.9253 5.7566 0.0052 11 1 7.8126 5.1408 0.0105 12 6 7.0397 7.1306 0.0010 13 7 5.9591 7.8803 -0.0070 14 14 8.7293 7.9272 0.0053 15 1 9.7741 6.8719 0.0126 16 1 8.8835 8.7674 -1.2094 17 1 8.8735 8.7755 1.2155 18 7 3.6092 -0.6404 0.0101 19 6 4.7870 -1.5115 0.0175 20 1 5.6958 -0.9102 -0.0053 21 6 4.7758 -2.4022 1.2723 22 6 5.8155 -3.5258 1.0903 23 16 5.9268 -3.7833 -0.7173 24 8 7.2311 -3.4375 -1.1628 25 8 5.3769 -5.0514 -1.0470 26 6 4.7495 -2.4656 -1.2041 27 7 2.2731 -1.0608 0.0057 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.9903 2.1597 -0.0038 32 1 5.6361 1.1295 0.0131 33 1 6.5941 3.2583 0.0109 34 1 5.0180 5.4209 -0.8920 35 1 5.0109 5.4264 0.8880 36 1 6.0397 8.8470 -0.0103 37 1 5.0307 -1.8051 2.1478 38 1 3.7851 -2.8374 1.4038 39 1 6.7816 -3.2155 1.4886 40 1 5.4783 -4.4371 1.5839 41 1 3.7488 -2.8739 -1.3455 42 1 5.0910 -1.9550 -2.1045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785665553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:18 Heat of formation + Delta-G solvation = -10.671523 kcal Electronic energy + Delta-G solvation = -27424.190489 eV Core-core repulsion = 23341.000338 eV Total energy + Delta-G solvation = -4083.190151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.60862 -39.42012 -37.57609 -37.25014 -36.47490 -34.95929 -34.33813 -32.64102 -32.38211 -30.44320 -28.96434 -28.09947 -27.08388 -25.28383 -23.26766 -22.24044 -21.52695 -20.11600 -20.01036 -19.36200 -18.21909 -17.98085 -17.24835 -16.55384 -16.15755 -16.02112 -15.74067 -15.43495 -15.05995 -14.84882 -14.68664 -14.56986 -14.16214 -13.75898 -13.33565 -13.30853 -13.04636 -12.98827 -12.68812 -12.63386 -12.52431 -12.47001 -12.32430 -12.11200 -12.04157 -11.76924 -11.36493 -11.04312 -11.03617 -10.94869 -10.66350 -10.59777 -10.34638 -9.56725 -9.48088 -8.90754 -8.87132 -8.24653 -7.80677 -6.25738 -4.33248 -0.54677 1.70709 1.81260 2.11227 2.87045 2.88222 3.03547 3.18184 3.26006 3.28452 3.40053 3.64600 3.70894 3.83344 3.98149 4.03216 4.23436 4.26027 4.62208 4.63076 4.82947 4.98009 5.06718 5.11089 5.11246 5.26302 5.34311 5.57394 5.60962 5.79874 5.81783 6.02702 6.26550 6.73973 6.83339 7.08168 7.25815 7.34205 7.39911 7.60446 7.77661 7.87594 8.50284 8.69312 8.97696 9.33613 10.84323 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.012018 B = 0.002693 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.284298 B =10393.480731 C =12356.299241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.093 3.907 3 C -0.278 4.278 4 C 0.342 3.658 5 N -0.672 5.672 6 C 0.698 3.302 7 O -0.564 6.564 8 N -0.716 5.716 9 C 0.266 3.734 10 C -0.546 4.546 11 H 0.064 0.936 12 C 0.065 3.935 13 N -0.883 5.883 14 Si 0.905 3.095 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.282 1.282 18 N -0.388 5.388 19 C 0.172 3.828 20 H 0.114 0.886 21 C -0.125 4.125 22 C -0.589 4.589 23 S 2.397 3.603 24 O -0.929 6.929 25 O -0.930 6.930 26 C -0.604 4.604 27 N -0.301 5.301 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.178 0.822 32 H 0.400 0.600 33 H 0.389 0.611 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.267 0.733 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.063 -22.740 2.080 23.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.074 4.074 3 C -0.309 4.309 4 C 0.122 3.878 5 N -0.323 5.323 6 C 0.397 3.603 7 O -0.440 6.440 8 N -0.368 5.368 9 C 0.146 3.854 10 C -0.584 4.584 11 H 0.082 0.918 12 C -0.139 4.139 13 N -0.520 5.520 14 Si 0.733 3.267 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.207 1.207 18 N -0.176 5.176 19 C 0.067 3.933 20 H 0.132 0.868 21 C -0.164 4.164 22 C -0.719 4.719 23 S 2.579 3.421 24 O -0.926 6.926 25 O -0.926 6.926 26 C -0.733 4.733 27 N -0.124 5.124 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.195 0.805 32 H 0.235 0.765 33 H 0.222 0.778 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.161 0.839 40 H 0.164 0.836 41 H 0.173 0.827 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.406 -23.891 1.531 24.181 hybrid contribution 1.533 1.585 0.449 2.251 sum -1.872 -22.306 1.980 22.472 Atomic orbital electron populations 1.20177 0.86545 1.03248 1.02974 1.22251 0.96892 0.90693 0.97542 1.21629 0.88713 1.01449 1.19139 1.17739 0.88889 0.81280 0.99877 1.42263 1.06465 1.05631 1.77891 1.15878 0.86281 0.79127 0.78983 1.90840 1.24017 1.72483 1.56615 1.45782 1.05628 1.09384 1.76008 1.19131 0.97666 0.70566 0.98085 1.21215 0.91672 0.91876 1.53642 0.91778 1.24939 0.97407 0.97003 0.94574 1.69980 1.28019 1.05463 1.48564 0.86335 0.83231 0.79355 0.77826 1.19630 1.20738 1.20746 1.48121 1.05117 1.01454 1.62921 1.21628 0.87081 0.91663 0.92927 0.86789 1.22253 1.00489 0.95274 0.98408 1.30496 1.08348 1.08006 1.25073 1.08896 0.76620 0.77008 0.79623 1.93661 1.35038 1.84628 1.79250 1.93641 1.79820 1.37137 1.82044 1.31159 1.19403 1.16282 1.06418 1.77260 0.84306 1.21537 1.29332 0.90501 0.91119 0.90141 0.80455 0.76495 0.77784 0.95241 0.95244 0.92361 0.88131 0.87757 0.83926 0.83589 0.82669 0.83722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.44 36.01 0.38 -0.31 16 2 C 0.09 1.24 7.21 -82.44 -0.59 0.64 16 3 C -0.28 -4.40 9.58 -39.78 -0.38 -4.78 16 4 C 0.34 4.94 7.66 -153.14 -1.17 3.76 16 5 N -0.67 -9.33 5.42 -15.85 -0.09 -9.41 16 6 C 0.70 13.03 8.53 -86.92 -0.74 12.29 16 7 O -0.56 -12.62 13.47 5.28 0.07 -12.55 16 8 N -0.72 -13.77 5.55 -66.41 -0.37 -14.14 16 9 C 0.27 6.61 5.43 -5.19 -0.03 6.58 16 10 C -0.55 -14.02 9.28 -34.44 -0.32 -14.34 16 11 H 0.06 1.54 7.60 -52.48 -0.40 1.14 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.88 -25.05 13.29 55.43 0.74 -24.31 16 14 Si 0.91 20.09 29.54 -169.99 -5.02 15.07 16 15 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 N -0.39 -4.55 3.36 -52.41 -0.18 -4.72 16 19 C 0.17 1.32 3.41 -66.39 -0.23 1.09 16 20 H 0.11 0.61 6.85 -51.93 -0.36 0.26 16 21 C -0.13 -0.72 6.00 -25.66 -0.15 -0.87 16 22 C -0.59 -2.28 7.26 37.76 0.27 -2.01 16 23 S 2.40 15.75 6.11 -107.50 -0.66 15.10 16 24 O -0.93 -9.18 18.15 -57.71 -1.05 -10.23 16 25 O -0.93 -9.49 18.15 -57.71 -1.05 -10.54 16 26 C -0.60 -4.06 6.90 38.24 0.26 -3.80 16 27 N -0.30 -3.88 12.19 33.65 0.41 -3.47 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.18 3.23 5.82 -52.48 -0.31 2.92 16 32 H 0.40 3.95 7.56 -40.82 -0.31 3.64 16 33 H 0.39 6.20 8.34 -40.82 -0.34 5.86 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.66 8.04 -51.93 -0.42 0.25 16 39 H 0.14 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.15 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.16 1.12 7.98 -51.93 -0.41 0.70 16 42 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 367.47 15.07 5.54 5.54 Total: -1.00 -37.55 367.47 -9.93 -47.48 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.48 Total: 6.29 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -2.80 Total: -0.10 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.52 Total: -56.06 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -2.02 Total: -33.32 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 15.75 SS G_CDS: -0.66 Total: 15.10 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.55 -9.93 -47.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785665553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.806 kcal (2) G-P(sol) polarization free energy of solvation -37.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds