Wall clock time and date at job start Wed Apr 1 2020 01:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39765 * 125.84213 * 2 1 4 4 C 1.36095 * 107.82598 * 179.73878 * 3 2 1 5 5 N 1.39507 * 126.21346 * 180.02562 * 4 3 2 6 6 C 1.34778 * 120.00120 * 359.97116 * 5 4 3 7 7 O 1.21593 * 119.99764 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00378 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99959 * 179.97438 * 8 6 5 10 10 C 1.50705 * 109.46990 * 179.97438 * 9 8 6 11 11 H 1.08007 * 119.99898 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00161 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99680 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00081 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47288 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47031 * 119.99872 * 14 12 10 17 17 H 1.48491 * 109.47195 * 240.00081 * 14 12 10 18 18 N 1.35248 * 107.57545 * 359.97438 * 4 3 2 19 19 C 1.46493 * 126.04712 * 180.02562 * 18 4 3 20 20 H 1.09000 * 110.01299 * 358.62596 * 19 18 4 21 21 C 1.53882 * 110.02873 * 120.00096 * 19 18 4 22 22 C 1.54161 * 108.70673 * 166.46916 * 21 19 18 23 23 S 1.82922 * 105.08529 * 332.09479 * 22 21 19 24 24 O 1.42103 * 109.35348 * 115.52170 * 23 22 21 25 25 O 1.42098 * 109.35269 * 248.72216 * 23 22 21 26 26 C 1.55048 * 110.02827 * 237.19246 * 19 18 4 27 27 N 1.30848 * 125.83702 * 179.69062 * 2 1 3 28 28 H 1.09007 * 109.47155 * 90.00412 * 1 2 3 29 29 H 1.09002 * 109.47333 * 210.00165 * 1 2 3 30 30 H 1.08995 * 109.47409 * 330.00137 * 1 2 3 31 31 H 1.08003 * 126.08092 * 359.75310 * 3 2 1 32 32 H 0.97004 * 120.00166 * 179.97438 * 5 4 3 33 33 H 0.97004 * 119.99910 * 359.97438 * 8 6 5 34 34 H 1.08999 * 109.46908 * 299.99294 * 9 8 6 35 35 H 1.08998 * 109.47151 * 59.99986 * 9 8 6 36 36 H 0.97001 * 119.99393 * 180.02562 * 13 12 10 37 37 H 1.08999 * 109.64648 * 286.32937 * 21 19 18 38 38 H 1.09002 * 109.64136 * 46.61755 * 21 19 18 39 39 H 1.08999 * 110.31567 * 90.99506 * 22 21 19 40 40 H 1.08995 * 110.32224 * 213.09045 * 22 21 19 41 41 H 1.08998 * 110.79022 * 316.54213 * 26 19 18 42 42 H 1.09001 * 110.78959 * 80.00864 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1330 0.0000 4 6 3.6196 0.7121 0.0059 5 7 4.7515 1.5275 0.0084 6 6 4.6161 2.8685 0.0043 7 8 3.5072 3.3675 -0.0021 8 7 5.7095 3.6563 0.0062 9 6 5.5622 5.1139 0.0012 10 6 6.9253 5.7566 0.0052 11 1 7.8126 5.1408 0.0105 12 6 7.0397 7.1306 0.0010 13 7 5.9591 7.8803 -0.0070 14 14 8.7293 7.9272 0.0053 15 1 9.7741 6.8719 0.0126 16 1 8.8835 8.7674 -1.2094 17 1 8.8735 8.7755 1.2155 18 7 3.6092 -0.6404 0.0101 19 6 4.7870 -1.5115 0.0175 20 1 5.6958 -0.9102 -0.0053 21 6 4.7758 -2.4022 1.2723 22 6 5.8155 -3.5258 1.0903 23 16 5.9268 -3.7833 -0.7173 24 8 7.2311 -3.4375 -1.1628 25 8 5.3769 -5.0514 -1.0470 26 6 4.7495 -2.4656 -1.2041 27 7 2.2731 -1.0608 0.0057 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.9903 2.1597 -0.0038 32 1 5.6361 1.1295 0.0131 33 1 6.5941 3.2583 0.0109 34 1 5.0180 5.4209 -0.8920 35 1 5.0109 5.4264 0.8880 36 1 6.0397 8.8470 -0.0103 37 1 5.0307 -1.8051 2.1478 38 1 3.7851 -2.8374 1.4038 39 1 6.7816 -3.2155 1.4886 40 1 5.4783 -4.4371 1.5839 41 1 3.7488 -2.8739 -1.3455 42 1 5.0910 -1.9550 -2.1045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785665553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:17 Heat of formation + Delta-G solvation = -40.732693 kcal Electronic energy + Delta-G solvation = -27425.494039 eV Core-core repulsion = 23341.000338 eV Total energy + Delta-G solvation = -4084.493701 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.69559 -40.87741 -38.23470 -37.88746 -37.13559 -36.47453 -35.95107 -34.39463 -33.38769 -31.07142 -30.25377 -28.94503 -28.79081 -25.88692 -25.03302 -23.06638 -22.84110 -21.49163 -21.11414 -19.92181 -19.54075 -19.02970 -17.93906 -17.78886 -17.32171 -17.03357 -16.84913 -16.70298 -16.35983 -16.00959 -15.61853 -15.48796 -15.14182 -15.02130 -14.65895 -14.21968 -14.06619 -14.00525 -13.83553 -13.64246 -13.33939 -13.33403 -13.20130 -13.12787 -12.99656 -12.86758 -12.75632 -12.27237 -12.21293 -12.01978 -11.93407 -11.65945 -11.45699 -11.43659 -11.11077 -10.82305 -10.02846 -9.82525 -9.08274 -8.28101 -6.43798 -1.07814 0.66247 0.81116 1.43917 1.46260 1.47430 1.59588 1.70860 1.80928 2.19782 2.39141 2.50630 2.85789 3.08079 3.12905 3.19574 3.26222 3.47017 3.55495 3.83303 3.90789 4.07035 4.29218 4.46438 4.58014 4.72532 4.76000 4.80915 4.86750 4.89199 4.93703 5.01496 5.08961 5.20533 5.26949 5.44023 5.60141 5.80032 5.80555 5.87235 6.08950 6.65081 6.68779 7.05649 7.25511 7.48750 8.84055 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.012018 B = 0.002693 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.284298 B =10393.480731 C =12356.299241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.087 3.913 3 C -0.308 4.308 4 C 0.332 3.668 5 N -0.648 5.648 6 C 0.701 3.299 7 O -0.605 6.605 8 N -0.708 5.708 9 C 0.285 3.715 10 C -0.553 4.553 11 H 0.086 0.914 12 C 0.006 3.994 13 N -0.929 5.929 14 Si 0.982 3.018 15 H -0.252 1.252 16 H -0.282 1.282 17 H -0.280 1.280 18 N -0.374 5.374 19 C 0.152 3.848 20 H 0.141 0.859 21 C -0.124 4.124 22 C -0.559 4.559 23 S 2.413 3.587 24 O -0.963 6.963 25 O -0.970 6.970 26 C -0.602 4.602 27 N -0.299 5.299 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.148 0.852 32 H 0.423 0.577 33 H 0.409 0.591 34 H -0.008 1.008 35 H -0.006 1.006 36 H 0.269 0.731 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.170 0.830 40 H 0.168 0.832 41 H 0.150 0.850 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.955 -24.603 3.038 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.079 4.079 3 C -0.341 4.341 4 C 0.111 3.889 5 N -0.301 5.301 6 C 0.400 3.600 7 O -0.483 6.483 8 N -0.362 5.362 9 C 0.162 3.838 10 C -0.591 4.591 11 H 0.104 0.896 12 C -0.194 4.194 13 N -0.567 5.567 14 Si 0.806 3.194 15 H -0.176 1.176 16 H -0.207 1.207 17 H -0.206 1.206 18 N -0.161 5.161 19 C 0.048 3.952 20 H 0.158 0.842 21 C -0.163 4.163 22 C -0.692 4.692 23 S 2.599 3.401 24 O -0.960 6.960 25 O -0.967 6.967 26 C -0.731 4.731 27 N -0.122 5.122 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.165 0.835 32 H 0.262 0.738 33 H 0.245 0.755 34 H 0.010 0.990 35 H 0.012 0.988 36 H 0.077 0.923 37 H 0.132 0.868 38 H 0.118 0.882 39 H 0.188 0.812 40 H 0.186 0.814 41 H 0.168 0.832 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.248 -25.873 2.455 26.019 hybrid contribution 0.793 2.087 0.181 2.240 sum -0.455 -23.786 2.637 23.936 Atomic orbital electron populations 1.20291 0.84370 1.04217 1.03966 1.22650 0.98411 0.89689 0.97179 1.21534 0.90369 1.01029 1.21130 1.17658 0.88394 0.82541 1.00335 1.41684 1.07698 1.03819 1.76870 1.15891 0.85273 0.80458 0.78376 1.90844 1.25587 1.73872 1.57992 1.45274 1.06929 1.07488 1.76469 1.18534 0.96946 0.73632 0.94686 1.21614 0.92305 0.92405 1.52803 0.89592 1.25993 1.01578 0.97829 0.93977 1.70135 1.30811 1.05862 1.49938 0.85144 0.78294 0.78447 0.77530 1.17583 1.20745 1.20623 1.48335 1.05794 1.00639 1.61369 1.22232 0.86364 0.92183 0.94392 0.84190 1.22264 1.00919 0.95484 0.97640 1.30342 1.09373 1.08384 1.21095 1.08278 0.75247 0.75735 0.80886 1.93614 1.36649 1.84832 1.80937 1.93589 1.80207 1.39225 1.83660 1.31122 1.19258 1.16156 1.06567 1.77228 0.84838 1.21315 1.28832 0.89429 0.89451 0.89843 0.83481 0.73836 0.75480 0.98963 0.98825 0.92256 0.86799 0.88235 0.81220 0.81407 0.83161 0.83147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.44 71.24 0.74 -0.56 16 2 C 0.09 2.30 7.21 43.07 0.31 2.61 16 3 C -0.31 -10.02 9.58 22.14 0.21 -9.81 16 4 C 0.33 9.35 7.66 131.31 1.01 10.36 16 5 N -0.65 -17.30 5.42 -322.30 -1.75 -19.05 16 6 C 0.70 26.45 8.53 179.06 1.53 27.98 16 7 O -0.60 -28.38 13.47 -4.01 -0.05 -28.44 16 8 N -0.71 -27.20 5.55 -482.30 -2.68 -29.88 16 9 C 0.28 14.62 5.43 85.64 0.46 15.08 16 10 C -0.55 -28.30 9.28 25.60 0.24 -28.06 16 11 H 0.09 3.93 7.60 -2.91 -0.02 3.91 16 12 C 0.01 0.33 5.46 84.65 0.46 0.79 16 13 N -0.93 -53.97 13.29 21.45 0.28 -53.69 16 14 Si 0.98 40.61 29.54 68.60 2.03 42.64 16 15 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 16 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 17 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 18 N -0.37 -8.12 3.36 -319.73 -1.07 -9.20 16 19 C 0.15 1.91 3.41 45.99 0.16 2.07 16 20 H 0.14 1.00 6.85 -2.39 -0.02 0.98 16 21 C -0.12 -0.97 6.00 31.28 0.19 -0.79 16 22 C -0.56 -2.10 7.26 72.38 0.53 -1.57 16 23 S 2.41 27.22 6.11 -56.49 -0.34 26.88 16 24 O -0.96 -17.50 18.15 -127.49 -2.31 -19.81 16 25 O -0.97 -18.87 18.15 -127.49 -2.31 -21.18 16 26 C -0.60 -7.03 6.90 72.68 0.50 -6.53 16 27 N -0.30 -7.32 12.19 -47.44 -0.58 -7.89 16 28 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.15 5.74 5.82 -2.91 -0.02 5.73 16 32 H 0.42 7.25 7.56 -92.71 -0.70 6.55 16 33 H 0.41 12.33 8.34 -92.71 -0.77 11.56 16 34 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 35 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 37 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 0.95 8.04 -2.39 -0.02 0.93 16 39 H 0.17 -0.11 8.14 -2.39 -0.02 -0.12 16 40 H 0.17 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.15 1.97 7.98 -2.39 -0.02 1.95 16 42 H 0.15 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -84.74 367.47 -2.85 -87.58 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -0.39 Total: 20.47 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 6.34 Total: 11.56 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -5.79 Total: -119.70 kcal Atomic # 8 Polarization: -64.75 SS G_CDS: -4.68 Total: -69.43 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Atomic # 16 Polarization: 27.22 SS G_CDS: -0.34 Total: 26.88 kcal Total: -84.74 -2.85 -87.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785665553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.852 kcal (2) G-P(sol) polarization free energy of solvation -84.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds