Wall clock time and date at job start Wed Apr 1 2020 00:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99962 * 2 1 4 4 H 1.48504 * 109.46838 * 274.26316 * 3 2 1 5 5 H 1.48499 * 109.47073 * 34.26306 * 3 2 1 6 6 H 1.48493 * 109.46860 * 154.26199 * 3 2 1 7 7 C 1.37871 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99994 * 352.58396 * 7 2 1 9 9 C 1.50696 * 119.99941 * 172.86366 * 7 2 1 10 10 C 1.53004 * 115.54959 * 301.47198 * 9 7 2 11 11 N 1.46499 * 109.47063 * 294.79679 * 10 9 7 12 12 C 1.34773 * 120.00035 * 184.69789 * 11 10 9 13 13 O 1.21589 * 119.99782 * 4.68973 * 12 11 10 14 14 N 1.34771 * 120.00285 * 184.69304 * 12 11 10 15 15 C 1.46497 * 120.00217 * 184.68243 * 14 12 11 16 16 H 1.09003 * 110.32874 * 35.77142 * 15 14 12 17 17 C 1.54995 * 110.36311 * 273.54560 * 15 14 12 18 18 C 1.55852 * 102.51487 * 276.15311 * 17 15 14 19 19 C 1.53132 * 101.28786 * 319.57841 * 18 17 15 20 20 H 1.09001 * 101.44755 * 284.59542 * 19 18 17 21 21 S 1.76979 * 115.18933 * 174.41456 * 19 18 17 22 22 C 1.78902 * 107.02692 * 258.92264 * 21 19 18 23 23 C 1.53086 * 108.15391 * 303.00623 * 22 21 19 24 24 S 1.80407 * 108.82377 * 74.13989 * 23 22 21 25 25 C 1.49099 * 109.14091 * 32.13287 * 19 18 17 26 26 H 1.09003 * 109.14522 * 232.36982 * 25 19 18 27 27 C 1.53003 * 117.50095 * 155.80617 * 9 7 2 28 28 C 1.52998 * 117.50086 * 87.14682 * 9 7 2 29 29 H 0.97001 * 120.00429 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47175 * 54.79805 * 10 9 7 31 31 H 1.09002 * 109.47077 * 174.80001 * 10 9 7 32 32 H 0.97003 * 120.00126 * 4.70166 * 11 10 9 33 33 H 0.97005 * 119.99969 * 4.68260 * 14 12 11 34 34 H 1.08994 * 110.79889 * 34.40906 * 17 15 14 35 35 H 1.09007 * 110.79537 * 157.70580 * 17 15 14 36 36 H 1.09004 * 111.05991 * 77.57828 * 18 17 15 37 37 H 1.09001 * 111.06062 * 201.57831 * 18 17 15 38 38 H 1.09007 * 109.91593 * 183.22393 * 22 21 19 39 39 H 1.09003 * 109.56748 * 62.58157 * 22 21 19 40 40 H 1.08999 * 109.58316 * 314.33433 * 23 22 21 41 41 H 1.09004 * 109.57538 * 193.94214 * 23 22 21 42 42 H 1.09006 * 117.49387 * 359.97438 * 27 9 7 43 43 H 1.09000 * 117.50230 * 145.01488 * 27 9 7 44 44 H 1.09001 * 117.49953 * 214.97878 * 28 9 7 45 45 H 1.09001 * 117.49961 * 359.97438 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4065 2.0984 -1.3963 5 1 1.4945 2.6250 0.7882 6 1 3.5888 1.4158 0.6080 7 6 2.0045 -1.1940 0.0005 8 1 1.4712 -2.1254 0.1217 9 6 3.5027 -1.1991 -0.1616 10 6 4.0297 -0.5557 -1.4459 11 7 3.5880 -1.3400 -2.6018 12 6 4.0130 -1.0150 -3.8387 13 8 4.8288 -0.1258 -3.9871 14 7 3.5337 -1.6756 -4.9112 15 6 4.0700 -1.3937 -6.2450 16 1 5.1381 -1.1838 -6.1872 17 6 3.3196 -0.1990 -6.8867 18 6 2.0591 -0.8813 -7.4988 19 6 2.6612 -2.1706 -8.0647 20 1 3.1675 -1.7999 -8.9559 21 16 1.4910 -3.3205 -8.7282 22 6 1.2494 -4.5930 -7.4941 23 6 2.6123 -5.2129 -7.1751 24 16 3.5597 -4.0511 -6.1715 25 6 3.8017 -2.5964 -7.2038 26 1 4.6806 -2.7565 -7.8284 27 6 4.2691 -2.4022 0.3917 28 6 4.3507 -1.0493 1.1031 29 1 -0.4851 0.8400 -0.0004 30 1 3.6443 0.4605 -1.5277 31 1 5.1190 -0.5302 -1.4189 32 1 2.9897 -2.0933 -2.4768 33 1 2.8336 -2.3377 -4.8000 34 1 3.0350 0.5312 -6.1291 35 1 3.9264 0.2674 -7.6629 36 1 1.3191 -1.0996 -6.7288 37 1 1.6285 -0.2694 -8.2914 38 1 0.5770 -5.3601 -7.8785 39 1 0.8259 -4.1511 -6.5921 40 1 3.1476 -5.4154 -8.1027 41 1 2.4706 -6.1419 -6.6227 42 1 3.6896 -3.1898 0.8734 43 1 5.1489 -2.7352 -0.1590 44 1 5.2842 -0.4927 1.0201 45 1 3.8249 -0.9466 2.0523 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797504592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:55 Heat of formation + Delta-G solvation = 2.254140 kcal Electronic energy + Delta-G solvation = -26202.035002 eV Core-core repulsion = 22665.698564 eV Total energy + Delta-G solvation = -3536.336437 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.02131 -38.36654 -36.93591 -33.78026 -33.38063 -33.00413 -32.19043 -29.38415 -28.30690 -26.46209 -24.91306 -24.23016 -21.73059 -21.53327 -21.07383 -20.05178 -19.27360 -18.14023 -17.89334 -16.59397 -16.57905 -16.22101 -15.65900 -15.27587 -14.84614 -14.55455 -14.39280 -14.37049 -14.18132 -13.92885 -13.43374 -13.16703 -13.06710 -12.92799 -12.75971 -12.34744 -12.13693 -12.04522 -11.80356 -11.40721 -11.20128 -11.04188 -10.90048 -10.65763 -10.54404 -10.44971 -10.23004 -9.96624 -9.79949 -9.48413 -9.17659 -8.91133 -8.78921 -8.47779 -8.17504 -8.08826 -7.92207 -6.17875 -4.18838 1.01838 1.32485 2.02190 2.24571 3.14746 3.30553 3.39827 3.45888 3.65003 3.87690 4.11174 4.24395 4.39191 4.53146 4.63622 4.67296 4.84624 4.88132 5.01122 5.02447 5.05208 5.18714 5.24371 5.25562 5.33306 5.38752 5.65956 5.71033 5.73130 5.97249 5.98978 6.03142 6.17106 6.28850 6.47590 6.52644 6.72686 6.75860 6.94959 7.10267 7.23900 7.48669 7.68396 8.41999 8.59848 8.84399 9.12642 9.46395 10.93085 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.003337 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.374588 B = 8389.436994 C = 8562.320430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.084 3.916 3 Si 0.870 3.130 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.252 1.252 7 C -0.488 4.488 8 H 0.078 0.922 9 C -0.015 4.015 10 C 0.173 3.827 11 N -0.716 5.716 12 C 0.702 3.298 13 O -0.607 6.607 14 N -0.738 5.738 15 C 0.187 3.813 16 H 0.100 0.900 17 C -0.135 4.135 18 C -0.103 4.103 19 C -0.087 4.087 20 H 0.102 0.898 21 S -0.194 6.194 22 C -0.110 4.110 23 C -0.109 4.109 24 S -0.199 6.199 25 C -0.065 4.065 26 H 0.108 0.892 27 C -0.180 4.180 28 C -0.189 4.189 29 H 0.265 0.735 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.403 0.597 33 H 0.404 0.596 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.832 -8.531 -18.098 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.119 4.119 3 Si 0.698 3.302 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.176 1.176 7 C -0.525 4.525 8 H 0.096 0.904 9 C -0.017 4.017 10 C 0.049 3.951 11 N -0.369 5.369 12 C 0.402 3.598 13 O -0.487 6.487 14 N -0.398 5.398 15 C 0.077 3.923 16 H 0.118 0.882 17 C -0.176 4.176 18 C -0.143 4.143 19 C -0.217 4.217 20 H 0.120 0.880 21 S 0.037 5.963 22 C -0.260 4.260 23 C -0.259 4.259 24 S 0.029 5.971 25 C -0.196 4.196 26 H 0.126 0.874 27 C -0.217 4.217 28 C -0.227 4.227 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.238 0.762 33 H 0.243 0.757 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.137 0.863 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.137 0.863 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.287 -7.752 -18.172 20.452 hybrid contribution -0.113 0.360 0.032 0.378 sum 5.174 -7.392 -18.140 20.261 Atomic orbital electron populations 1.69895 1.06374 1.27244 1.49298 1.24897 0.94485 0.99028 0.93532 0.87011 0.81321 0.83611 0.78279 1.20444 1.22037 1.17581 1.20242 0.86825 0.94639 1.50790 0.90443 1.19600 0.94682 0.97859 0.89533 1.20930 0.96539 0.93833 0.83822 1.44968 1.52179 1.35480 1.04299 1.15998 0.81305 0.81751 0.80765 1.90857 1.38023 1.34135 1.85664 1.45363 1.44024 1.45539 1.04874 1.21613 0.99462 0.90433 0.80784 0.88196 1.23183 0.96162 0.97575 1.00661 1.22627 0.98026 0.92919 1.00769 1.22105 0.97321 0.98364 1.03926 0.87990 1.85636 1.57993 1.26011 1.26708 1.23499 0.99589 1.00012 1.02934 1.23739 0.96842 1.01022 1.04300 1.86820 1.72668 1.12540 1.25039 1.23396 1.00245 0.96635 0.99323 0.87420 1.22770 1.01824 0.91837 1.05277 1.23059 1.01205 0.99776 0.98671 0.92499 0.92980 0.93332 0.76176 0.75703 0.89470 0.90235 0.90404 0.90011 0.86296 0.88052 0.88585 0.86291 0.89725 0.90867 0.91157 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 2 C 0.08 2.32 5.46 -17.82 -0.10 2.22 16 3 Si 0.87 21.54 24.70 -169.99 -4.20 17.35 16 4 H -0.28 -7.06 6.95 56.52 0.39 -6.66 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.25 -5.93 6.12 56.52 0.35 -5.58 16 7 C -0.49 -12.78 9.19 -34.44 -0.32 -13.09 16 8 H 0.08 2.20 8.06 -52.48 -0.42 1.77 16 9 C -0.02 -0.34 0.85 -155.66 -0.13 -0.48 16 10 C 0.17 3.79 5.08 -4.04 -0.02 3.77 16 11 N -0.72 -14.16 5.48 -65.23 -0.36 -14.51 16 12 C 0.70 13.36 8.55 -86.93 -0.74 12.61 16 13 O -0.61 -13.44 16.08 5.29 0.09 -13.35 16 14 N -0.74 -10.81 4.38 -56.02 -0.25 -11.05 16 15 C 0.19 2.26 3.02 -65.20 -0.20 2.07 16 16 H 0.10 1.32 7.72 -51.93 -0.40 0.92 16 17 C -0.13 -1.51 6.59 -24.15 -0.16 -1.67 16 18 C -0.10 -1.02 6.50 -25.14 -0.16 -1.18 16 19 C -0.09 -0.78 2.42 -28.58 -0.07 -0.85 16 20 H 0.10 0.83 7.79 -43.14 -0.34 0.50 16 21 S -0.19 -1.74 21.41 -107.50 -2.30 -4.04 16 22 C -0.11 -0.85 6.32 37.20 0.24 -0.62 16 23 C -0.11 -0.82 6.27 37.20 0.23 -0.59 16 24 S -0.20 -2.03 18.68 -107.50 -2.01 -4.04 16 25 C -0.06 -0.62 3.33 -26.97 -0.09 -0.71 16 26 H 0.11 0.91 8.12 -51.64 -0.42 0.49 16 27 C -0.18 -3.49 9.96 -26.69 -0.27 -3.76 16 28 C -0.19 -3.88 8.69 -26.70 -0.23 -4.11 16 29 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.05 1.26 4.26 -51.93 -0.22 1.04 16 31 H 0.05 1.04 8.06 -51.93 -0.42 0.62 16 32 H 0.40 7.56 8.36 -40.82 -0.34 7.22 16 33 H 0.40 5.54 6.77 -35.60 -0.24 5.30 16 34 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.12 0.73 8.14 -51.81 -0.42 0.31 16 39 H 0.10 0.89 8.04 -51.73 -0.42 0.47 16 40 H 0.10 0.69 8.01 -51.90 -0.42 0.28 16 41 H 0.12 0.76 8.14 -51.90 -0.42 0.34 16 42 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -30.57 372.01 -11.72 -42.30 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -7.06 Total: 13.46 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -2.02 Total: -6.38 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 0.17 Total: -50.89 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.09 Total: -13.35 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.20 Total: 17.35 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -4.31 Total: -8.08 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.57 -11.72 -42.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797504592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.552 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds