Wall clock time and date at job start Wed Apr 1 2020 00:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99962 * 2 1 4 4 H 1.48504 * 109.46838 * 274.26316 * 3 2 1 5 5 H 1.48499 * 109.47073 * 34.26306 * 3 2 1 6 6 H 1.48493 * 109.46860 * 154.26199 * 3 2 1 7 7 C 1.37871 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99994 * 352.58396 * 7 2 1 9 9 C 1.50696 * 119.99941 * 172.86366 * 7 2 1 10 10 C 1.53004 * 115.54959 * 301.47198 * 9 7 2 11 11 N 1.46499 * 109.47063 * 294.79679 * 10 9 7 12 12 C 1.34773 * 120.00035 * 184.69789 * 11 10 9 13 13 O 1.21589 * 119.99782 * 4.68973 * 12 11 10 14 14 N 1.34771 * 120.00285 * 184.69304 * 12 11 10 15 15 C 1.46497 * 120.00217 * 184.68243 * 14 12 11 16 16 H 1.09003 * 110.32874 * 35.77142 * 15 14 12 17 17 C 1.54995 * 110.36311 * 273.54560 * 15 14 12 18 18 C 1.55852 * 102.51487 * 276.15311 * 17 15 14 19 19 C 1.53132 * 101.28786 * 319.57841 * 18 17 15 20 20 H 1.09001 * 101.44755 * 284.59542 * 19 18 17 21 21 S 1.76979 * 115.18933 * 174.41456 * 19 18 17 22 22 C 1.78902 * 107.02692 * 258.92264 * 21 19 18 23 23 C 1.53086 * 108.15391 * 303.00623 * 22 21 19 24 24 S 1.80407 * 108.82377 * 74.13989 * 23 22 21 25 25 C 1.49099 * 109.14091 * 32.13287 * 19 18 17 26 26 H 1.09003 * 109.14522 * 232.36982 * 25 19 18 27 27 C 1.53003 * 117.50095 * 155.80617 * 9 7 2 28 28 C 1.52998 * 117.50086 * 87.14682 * 9 7 2 29 29 H 0.97001 * 120.00429 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47175 * 54.79805 * 10 9 7 31 31 H 1.09002 * 109.47077 * 174.80001 * 10 9 7 32 32 H 0.97003 * 120.00126 * 4.70166 * 11 10 9 33 33 H 0.97005 * 119.99969 * 4.68260 * 14 12 11 34 34 H 1.08994 * 110.79889 * 34.40906 * 17 15 14 35 35 H 1.09007 * 110.79537 * 157.70580 * 17 15 14 36 36 H 1.09004 * 111.05991 * 77.57828 * 18 17 15 37 37 H 1.09001 * 111.06062 * 201.57831 * 18 17 15 38 38 H 1.09007 * 109.91593 * 183.22393 * 22 21 19 39 39 H 1.09003 * 109.56748 * 62.58157 * 22 21 19 40 40 H 1.08999 * 109.58316 * 314.33433 * 23 22 21 41 41 H 1.09004 * 109.57538 * 193.94214 * 23 22 21 42 42 H 1.09006 * 117.49387 * 359.97438 * 27 9 7 43 43 H 1.09000 * 117.50230 * 145.01488 * 27 9 7 44 44 H 1.09001 * 117.49953 * 214.97878 * 28 9 7 45 45 H 1.09001 * 117.49961 * 359.97438 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4065 2.0984 -1.3963 5 1 1.4945 2.6250 0.7882 6 1 3.5888 1.4158 0.6080 7 6 2.0045 -1.1940 0.0005 8 1 1.4712 -2.1254 0.1217 9 6 3.5027 -1.1991 -0.1616 10 6 4.0297 -0.5557 -1.4459 11 7 3.5880 -1.3400 -2.6018 12 6 4.0130 -1.0150 -3.8387 13 8 4.8288 -0.1258 -3.9871 14 7 3.5337 -1.6756 -4.9112 15 6 4.0700 -1.3937 -6.2450 16 1 5.1381 -1.1838 -6.1872 17 6 3.3196 -0.1990 -6.8867 18 6 2.0591 -0.8813 -7.4988 19 6 2.6612 -2.1706 -8.0647 20 1 3.1675 -1.7999 -8.9559 21 16 1.4910 -3.3205 -8.7282 22 6 1.2494 -4.5930 -7.4941 23 6 2.6123 -5.2129 -7.1751 24 16 3.5597 -4.0511 -6.1715 25 6 3.8017 -2.5964 -7.2038 26 1 4.6806 -2.7565 -7.8284 27 6 4.2691 -2.4022 0.3917 28 6 4.3507 -1.0493 1.1031 29 1 -0.4851 0.8400 -0.0004 30 1 3.6443 0.4605 -1.5277 31 1 5.1190 -0.5302 -1.4189 32 1 2.9897 -2.0933 -2.4768 33 1 2.8336 -2.3377 -4.8000 34 1 3.0350 0.5312 -6.1291 35 1 3.9264 0.2674 -7.6629 36 1 1.3191 -1.0996 -6.7288 37 1 1.6285 -0.2694 -8.2914 38 1 0.5770 -5.3601 -7.8785 39 1 0.8259 -4.1511 -6.5921 40 1 3.1476 -5.4154 -8.1027 41 1 2.4706 -6.1419 -6.6227 42 1 3.6896 -3.1898 0.8734 43 1 5.1489 -2.7352 -0.1590 44 1 5.2842 -0.4927 1.0201 45 1 3.8249 -0.9466 2.0523 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797504592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:54 Heat of formation + Delta-G solvation = -16.554509 kcal Electronic energy + Delta-G solvation = -26202.850606 eV Core-core repulsion = 22665.698564 eV Total energy + Delta-G solvation = -3537.152042 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.31864 -39.59274 -38.55476 -35.02564 -34.65279 -34.28087 -33.97141 -30.21732 -29.46028 -28.17556 -26.71656 -24.85966 -23.25017 -22.62171 -22.11132 -21.35575 -21.02174 -19.41596 -18.96410 -18.32041 -17.49630 -17.11083 -17.01902 -16.91222 -16.13293 -15.80553 -15.66595 -15.45435 -15.12720 -14.94277 -14.87988 -14.74843 -14.29278 -14.16726 -13.91847 -13.78890 -13.50494 -13.01277 -12.89786 -12.76861 -12.61403 -12.33354 -12.16403 -12.07005 -12.03197 -11.65716 -11.50722 -11.30396 -11.17751 -11.03437 -10.70351 -10.68031 -10.37738 -10.24133 -9.63824 -8.92029 -8.67890 -8.31987 -6.33367 0.27352 0.63808 1.30570 1.33618 1.37118 1.47001 1.53241 1.81221 2.18878 2.33393 2.94037 3.02213 3.28376 3.30829 3.52806 3.61719 3.76592 4.00670 4.02584 4.05695 4.15061 4.24099 4.29171 4.30518 4.41768 4.47598 4.48297 4.54309 4.62463 4.68080 4.77730 4.81698 4.92876 4.93411 5.02998 5.07311 5.10374 5.26198 5.51276 5.54895 5.64524 5.69564 6.07956 6.30438 6.71701 7.14979 7.33801 7.62497 8.82368 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.003337 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.374588 B = 8389.436994 C = 8562.320430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.038 3.962 3 Si 0.918 3.082 4 H -0.292 1.292 5 H -0.296 1.296 6 H -0.230 1.230 7 C -0.473 4.473 8 H 0.046 0.954 9 C -0.041 4.041 10 C 0.180 3.820 11 N -0.719 5.719 12 C 0.700 3.300 13 O -0.639 6.639 14 N -0.723 5.723 15 C 0.178 3.822 16 H 0.090 0.910 17 C -0.131 4.131 18 C -0.097 4.097 19 C -0.085 4.085 20 H 0.118 0.882 21 S -0.200 6.200 22 C -0.108 4.108 23 C -0.092 4.092 24 S -0.244 6.244 25 C -0.048 4.048 26 H 0.125 0.875 27 C -0.154 4.154 28 C -0.183 4.183 29 H 0.264 0.736 30 H 0.027 0.973 31 H 0.058 0.942 32 H 0.407 0.593 33 H 0.409 0.591 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.140 0.860 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.134 0.866 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.308 -9.710 -19.510 22.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.161 4.161 3 Si 0.746 3.254 4 H -0.219 1.219 5 H -0.224 1.224 6 H -0.152 1.152 7 C -0.511 4.511 8 H 0.064 0.936 9 C -0.042 4.042 10 C 0.056 3.944 11 N -0.372 5.372 12 C 0.399 3.601 13 O -0.522 6.522 14 N -0.382 5.382 15 C 0.070 3.930 16 H 0.108 0.892 17 C -0.172 4.172 18 C -0.137 4.137 19 C -0.216 4.216 20 H 0.136 0.864 21 S 0.031 5.969 22 C -0.258 4.258 23 C -0.242 4.242 24 S -0.016 6.016 25 C -0.179 4.179 26 H 0.144 0.856 27 C -0.191 4.191 28 C -0.221 4.221 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.242 0.758 33 H 0.249 0.751 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.158 0.842 39 H 0.107 0.893 40 H 0.124 0.876 41 H 0.152 0.848 42 H 0.104 0.896 43 H 0.115 0.885 44 H 0.110 0.890 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.769 -8.968 -19.602 22.594 hybrid contribution -0.610 0.602 0.429 0.959 sum 6.159 -8.365 -19.173 21.806 Atomic orbital electron populations 1.70004 1.07834 1.27748 1.52026 1.25493 0.94884 1.01776 0.93953 0.86236 0.81319 0.80453 0.77421 1.21899 1.22359 1.15208 1.20358 0.89042 0.92996 1.48688 0.93581 1.19447 0.92640 1.01343 0.90801 1.20724 0.96833 0.92697 0.84173 1.44911 1.52447 1.35466 1.04382 1.16146 0.81038 0.81649 0.81240 1.90824 1.39605 1.35619 1.86145 1.45328 1.43390 1.44588 1.04906 1.21811 0.98870 0.92348 0.80013 0.89236 1.23132 0.97097 0.96601 1.00373 1.22570 0.96947 0.93673 1.00557 1.22024 0.97248 0.98033 1.04286 0.86369 1.85686 1.57963 1.26366 1.26871 1.23543 1.00063 1.00077 1.02154 1.23756 0.96013 1.00265 1.04204 1.86956 1.73426 1.14072 1.27144 1.23302 1.01248 0.94929 0.98414 0.85646 1.22807 1.01573 0.91035 1.03728 1.23106 1.01210 1.00695 0.97121 0.92681 0.95545 0.92373 0.75812 0.75096 0.92725 0.87914 0.92347 0.88575 0.84244 0.89260 0.87566 0.84824 0.89573 0.88453 0.89028 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.41 13.96 21.44 0.30 -56.11 16 2 C 0.04 2.12 5.46 84.65 0.46 2.58 16 3 Si 0.92 44.98 24.70 68.60 1.69 46.68 16 4 H -0.29 -14.84 6.95 99.48 0.69 -14.15 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.23 -10.26 6.12 99.48 0.61 -9.65 16 7 C -0.47 -25.02 9.19 25.60 0.24 -24.78 16 8 H 0.05 2.68 8.06 -2.91 -0.02 2.65 16 9 C -0.04 -1.78 0.85 -52.93 -0.04 -1.83 16 10 C 0.18 7.77 5.08 86.38 0.44 8.21 16 11 N -0.72 -28.36 5.48 -478.54 -2.62 -30.99 16 12 C 0.70 26.75 8.55 179.06 1.53 28.28 16 13 O -0.64 -28.50 16.08 -4.00 -0.06 -28.57 16 14 N -0.72 -21.18 4.38 -449.41 -1.97 -23.15 16 15 C 0.18 4.21 3.02 46.76 0.14 4.35 16 16 H 0.09 2.34 7.72 -2.39 -0.02 2.32 16 17 C -0.13 -2.87 6.59 32.26 0.21 -2.66 16 18 C -0.10 -1.82 6.50 31.63 0.21 -1.62 16 19 C -0.09 -1.36 2.42 29.40 0.07 -1.29 16 20 H 0.12 1.57 7.79 -7.97 -0.06 1.51 16 21 S -0.20 -3.13 21.41 -56.49 -1.21 -4.34 16 22 C -0.11 -1.44 6.32 72.01 0.46 -0.99 16 23 C -0.09 -1.18 6.27 72.01 0.45 -0.72 16 24 S -0.24 -4.64 18.68 -56.49 -1.06 -5.69 16 25 C -0.05 -0.83 3.33 30.44 0.10 -0.73 16 26 H 0.13 1.80 8.12 -2.57 -0.02 1.78 16 27 C -0.15 -5.60 9.96 30.62 0.30 -5.29 16 28 C -0.18 -7.05 8.69 30.62 0.27 -6.78 16 29 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.03 1.28 4.26 -2.39 -0.01 1.27 16 31 H 0.06 2.38 8.06 -2.39 -0.02 2.36 16 32 H 0.41 15.30 8.36 -92.71 -0.78 14.53 16 33 H 0.41 11.23 6.77 -96.02 -0.65 10.58 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.14 1.32 8.14 -2.46 -0.02 1.30 16 39 H 0.09 1.45 8.04 -2.51 -0.02 1.43 16 40 H 0.11 1.20 8.01 -2.41 -0.02 1.18 16 41 H 0.13 1.35 8.14 -2.40 -0.02 1.33 16 42 H 0.09 3.11 8.14 -2.38 -0.02 3.09 16 43 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 44 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 45 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -67.00 372.01 -0.67 -67.67 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: -0.58 Total: 37.78 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 4.83 Total: -3.27 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -4.29 Total: -110.26 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.06 Total: -28.57 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.69 Total: 46.68 kcal Atomic # 16 Polarization: -7.77 SS G_CDS: -2.26 Total: -10.04 kcal Total: -67.00 -0.67 -67.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797504592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.117 kcal (2) G-P(sol) polarization free energy of solvation -66.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds