Wall clock time and date at job start Wed Apr 1 2020 00:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00234 * 2 1 4 4 H 1.48494 * 109.47070 * 270.00312 * 3 2 1 5 5 H 1.48504 * 109.47140 * 30.00530 * 3 2 1 6 6 H 1.48509 * 109.46983 * 150.00323 * 3 2 1 7 7 C 1.37880 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99985 * 173.55181 * 7 2 1 9 9 C 1.50703 * 119.99774 * 353.55621 * 7 2 1 10 10 C 1.52995 * 115.55332 * 85.40412 * 9 7 2 11 11 N 1.46500 * 109.47054 * 65.13995 * 10 9 7 12 12 C 1.34779 * 119.99661 * 178.28732 * 11 10 9 13 13 O 1.21587 * 120.00290 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99600 * 179.97438 * 12 11 10 15 15 C 1.46507 * 119.99628 * 180.02562 * 14 12 11 16 16 H 1.08999 * 110.27554 * 32.91686 * 15 14 12 17 17 C 1.54944 * 110.38866 * 270.78025 * 15 14 12 18 18 C 1.55356 * 106.45071 * 244.62747 * 17 15 14 19 19 C 1.53475 * 102.76393 * 23.94236 * 18 17 15 20 20 H 1.09000 * 111.36088 * 75.99993 * 19 18 17 21 21 S 1.80290 * 114.16255 * 201.99339 * 19 18 17 22 22 C 1.81652 * 102.17479 * 177.81553 * 21 19 18 23 23 C 1.52371 * 111.24334 * 298.59177 * 22 21 19 24 24 S 1.81545 * 111.33508 * 63.91409 * 23 22 21 25 25 C 1.52730 * 110.30516 * 155.00171 * 15 14 12 26 26 H 1.09004 * 109.92076 * 206.70247 * 25 15 14 27 27 C 1.53002 * 117.49495 * 231.07080 * 9 7 2 28 28 C 1.53000 * 117.49634 * 299.72669 * 9 7 2 29 29 H 0.97000 * 119.99844 * 5.06224 * 1 2 3 30 30 H 1.09002 * 109.47083 * 305.13709 * 10 9 7 31 31 H 1.09004 * 109.47178 * 185.14077 * 10 9 7 32 32 H 0.96998 * 119.99948 * 358.28511 * 11 10 9 33 33 H 0.97001 * 120.00327 * 0.02562 * 14 12 11 34 34 H 1.09004 * 110.06192 * 3.86803 * 17 15 14 35 35 H 1.08994 * 110.06307 * 125.37994 * 17 15 14 36 36 H 1.09006 * 110.75162 * 265.62929 * 18 17 15 37 37 H 1.09003 * 110.75666 * 142.26319 * 18 17 15 38 38 H 1.09004 * 109.11213 * 59.01816 * 22 21 19 39 39 H 1.08990 * 109.12080 * 178.15220 * 22 21 19 40 40 H 1.08998 * 109.11675 * 184.31970 * 23 22 21 41 41 H 1.08998 * 109.11322 * 303.39635 * 23 22 21 42 42 H 1.08994 * 117.50209 * 215.00127 * 27 9 7 43 43 H 1.08999 * 117.49780 * 0.02777 * 27 9 7 44 44 H 1.08995 * 117.50318 * 359.97438 * 28 9 7 45 45 H 1.09005 * 117.49722 * 144.97690 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0793 -1.1971 -0.1056 9 6 1.2580 -2.4951 0.1454 10 6 0.7019 -3.0859 -1.1517 11 7 1.8110 -3.4583 -2.0336 12 6 1.5596 -4.0345 -3.2258 13 8 0.4125 -4.2448 -3.5696 14 7 2.5799 -4.3766 -4.0373 15 6 2.3067 -5.0024 -5.3335 16 1 1.3727 -4.6221 -5.7471 17 6 2.2413 -6.5434 -5.1858 18 6 3.4279 -7.1151 -6.0096 19 6 4.4119 -5.9379 -6.0486 20 1 4.9300 -5.8218 -5.0966 21 16 5.5953 -6.0098 -7.4069 22 6 6.5281 -4.4671 -7.1843 23 6 5.6206 -3.2498 -7.3122 24 16 4.3698 -3.2175 -5.9968 25 6 3.4595 -4.7426 -6.3010 26 1 3.0954 -4.7681 -7.3281 27 6 1.7470 -3.4739 1.2149 28 6 0.4417 -2.7017 1.4228 29 1 -0.4850 0.8368 -0.0741 30 1 0.0752 -2.3455 -1.6489 31 1 0.1072 -3.9703 -0.9225 32 1 2.7261 -3.2902 -1.7594 33 1 3.4951 -4.2085 -3.7631 34 1 2.3449 -6.8233 -4.1375 35 1 1.2970 -6.9172 -5.5816 36 1 3.1059 -7.3827 -7.0161 37 1 3.8715 -7.9727 -5.5040 38 1 6.9877 -4.4674 -6.1959 39 1 7.3101 -4.4104 -7.9414 40 1 6.2257 -2.3454 -7.2499 41 1 5.1205 -3.2776 -8.2802 42 1 1.6724 -4.5388 0.9944 43 1 2.6082 -3.1767 1.8132 44 1 0.4449 -1.8970 2.1579 45 1 -0.4918 -3.2583 1.3390 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797504594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:59 Heat of formation + Delta-G solvation = -8.337606 kcal Electronic energy + Delta-G solvation = -25736.572824 eV Core-core repulsion = 22199.777094 eV Total energy + Delta-G solvation = -3536.795730 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.93289 -38.20444 -36.62737 -33.76894 -33.31908 -32.93593 -31.94015 -29.16446 -28.19326 -25.98670 -24.95266 -24.25713 -21.45901 -21.30192 -20.94435 -20.20491 -19.36857 -18.12716 -17.42936 -16.90905 -16.16530 -15.90211 -15.41872 -15.09535 -14.76915 -14.57505 -14.39298 -14.16541 -14.08725 -14.01760 -13.61457 -13.38948 -13.15252 -12.63802 -12.41064 -12.23003 -11.89306 -11.60628 -11.53078 -11.39978 -11.20503 -11.09631 -10.98151 -10.90930 -10.53905 -10.51019 -10.25412 -9.92914 -9.72870 -9.50110 -8.95413 -8.87797 -8.47140 -8.30014 -8.24005 -7.96707 -7.91573 -6.05397 -4.13698 1.18950 1.23169 2.01091 2.16876 3.19649 3.27670 3.35222 3.36869 3.74607 3.85602 4.21590 4.27049 4.37359 4.51063 4.53278 4.80154 4.83449 4.92036 4.99376 5.01212 5.14219 5.15869 5.22976 5.28565 5.31595 5.38269 5.57552 5.66639 5.90381 6.01139 6.05690 6.36185 6.49006 6.61636 6.71013 6.75116 6.87667 7.10513 7.34765 7.42686 7.49396 7.61321 7.83834 8.36529 8.67150 8.86752 9.21618 9.52929 11.02426 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.014308 B = 0.003094 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.528642 B = 9046.182243 C =10254.114499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.075 3.925 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.029 3.971 10 C 0.183 3.817 11 N -0.718 5.718 12 C 0.701 3.299 13 O -0.602 6.602 14 N -0.744 5.744 15 C 0.192 3.808 16 H 0.104 0.896 17 C -0.128 4.128 18 C -0.095 4.095 19 C -0.063 4.063 20 H 0.107 0.893 21 S -0.245 6.245 22 C -0.086 4.086 23 C -0.100 4.100 24 S -0.202 6.202 25 C -0.082 4.082 26 H 0.114 0.886 27 C -0.211 4.211 28 C -0.148 4.148 29 H 0.261 0.739 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.396 0.604 33 H 0.396 0.604 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.940 -11.868 -14.656 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.028 3.972 10 C 0.059 3.941 11 N -0.370 5.370 12 C 0.401 3.599 13 O -0.482 6.482 14 N -0.402 5.402 15 C 0.082 3.918 16 H 0.122 0.878 17 C -0.170 4.170 18 C -0.135 4.135 19 C -0.194 4.194 20 H 0.125 0.875 21 S -0.014 6.014 22 C -0.237 4.237 23 C -0.251 4.251 24 S 0.028 5.972 25 C -0.214 4.214 26 H 0.132 0.868 27 C -0.248 4.248 28 C -0.186 4.186 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.229 0.771 33 H 0.231 0.769 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.112 0.888 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.705 -11.868 -14.879 21.836 hybrid contribution 1.394 1.253 0.155 1.881 sum 12.099 -10.615 -14.724 21.814 Atomic orbital electron populations 1.69975 1.05873 1.26884 1.48260 1.24972 0.94782 0.98894 0.94305 0.86648 0.79925 0.83638 0.78150 1.20666 1.21189 1.19852 1.20320 0.92777 0.88618 1.51991 0.92283 1.19034 0.98535 0.93865 0.85741 1.20845 0.86593 0.96615 0.90025 1.45135 1.11333 1.63449 1.17089 1.16007 0.84468 0.78642 0.80829 1.90867 1.19764 1.62063 1.75488 1.45204 1.08784 1.67349 1.18822 1.20848 0.96459 0.92514 0.81941 0.87819 1.23072 0.98246 0.94246 1.01418 1.22143 0.94206 0.95691 1.01507 1.24356 0.96692 0.98854 0.99506 0.87483 1.86719 1.42787 1.30294 1.41636 1.23491 0.99853 0.93275 1.07038 1.23576 0.98860 1.01237 1.01386 1.87229 1.36729 1.30635 1.42591 1.24567 0.98025 0.94356 1.04454 0.86830 1.23015 0.98632 0.95655 1.07503 1.22488 0.92270 1.01069 1.02748 0.92874 0.91226 0.94768 0.77089 0.76851 0.90093 0.90048 0.90201 0.90092 0.88602 0.86764 0.86496 0.88763 0.91686 0.90434 0.89844 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.40 12.91 55.43 0.72 -23.68 16 2 C 0.07 1.99 5.39 -17.82 -0.10 1.89 16 3 Si 0.89 20.71 29.55 -169.99 -5.02 15.69 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.50 -12.88 8.63 -34.44 -0.30 -13.18 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.03 0.68 1.38 -155.66 -0.21 0.47 16 10 C 0.18 4.20 5.50 -4.04 -0.02 4.18 16 11 N -0.72 -14.12 5.48 -65.22 -0.36 -14.48 16 12 C 0.70 13.27 8.56 -86.91 -0.74 12.53 16 13 O -0.60 -13.60 15.99 5.29 0.08 -13.52 16 14 N -0.74 -10.51 4.43 -57.80 -0.26 -10.77 16 15 C 0.19 2.29 3.13 -67.04 -0.21 2.08 16 16 H 0.10 1.46 7.56 -51.93 -0.39 1.06 16 17 C -0.13 -1.28 6.66 -24.45 -0.16 -1.44 16 18 C -0.10 -0.76 6.42 -25.23 -0.16 -0.93 16 19 C -0.06 -0.55 2.75 -25.48 -0.07 -0.62 16 20 H 0.11 0.98 8.12 -51.93 -0.42 0.55 16 21 S -0.24 -2.08 21.66 -107.50 -2.33 -4.41 16 22 C -0.09 -0.59 6.23 36.84 0.23 -0.36 16 23 C -0.10 -0.75 6.22 36.84 0.23 -0.52 16 24 S -0.20 -2.17 20.04 -107.50 -2.15 -4.32 16 25 C -0.08 -0.81 2.49 -25.87 -0.06 -0.88 16 26 H 0.11 1.08 8.09 -51.92 -0.42 0.66 16 27 C -0.21 -4.37 9.96 -26.69 -0.27 -4.64 16 28 C -0.15 -3.37 9.42 -26.69 -0.25 -3.63 16 29 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 30 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 31 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 32 H 0.40 7.17 8.38 -40.82 -0.34 6.83 16 33 H 0.40 5.03 7.61 -40.82 -0.31 4.72 16 34 H 0.08 0.90 7.95 -51.93 -0.41 0.48 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.11 0.60 8.14 -51.92 -0.42 0.17 16 40 H 0.12 0.74 8.14 -51.91 -0.42 0.32 16 41 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 45 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 383.77 15.07 5.78 5.78 Total: -1.00 -29.92 383.77 -12.98 -42.90 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -7.34 Total: 11.84 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -2.10 Total: -5.02 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.10 Total: -48.93 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.08 Total: -13.52 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -4.25 SS G_CDS: -4.48 Total: -8.73 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.92 -12.98 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797504594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.561 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds