Wall clock time and date at job start Wed Apr 1 2020 00:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00234 * 2 1 4 4 H 1.48494 * 109.47070 * 270.00312 * 3 2 1 5 5 H 1.48504 * 109.47140 * 30.00530 * 3 2 1 6 6 H 1.48509 * 109.46983 * 150.00323 * 3 2 1 7 7 C 1.37880 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99985 * 173.55181 * 7 2 1 9 9 C 1.50703 * 119.99774 * 353.55621 * 7 2 1 10 10 C 1.52995 * 115.55332 * 85.40412 * 9 7 2 11 11 N 1.46500 * 109.47054 * 65.13995 * 10 9 7 12 12 C 1.34779 * 119.99661 * 178.28732 * 11 10 9 13 13 O 1.21587 * 120.00290 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99600 * 179.97438 * 12 11 10 15 15 C 1.46507 * 119.99628 * 180.02562 * 14 12 11 16 16 H 1.08999 * 110.27554 * 32.91686 * 15 14 12 17 17 C 1.54944 * 110.38866 * 270.78025 * 15 14 12 18 18 C 1.55356 * 106.45071 * 244.62747 * 17 15 14 19 19 C 1.53475 * 102.76393 * 23.94236 * 18 17 15 20 20 H 1.09000 * 111.36088 * 75.99993 * 19 18 17 21 21 S 1.80290 * 114.16255 * 201.99339 * 19 18 17 22 22 C 1.81652 * 102.17479 * 177.81553 * 21 19 18 23 23 C 1.52371 * 111.24334 * 298.59177 * 22 21 19 24 24 S 1.81545 * 111.33508 * 63.91409 * 23 22 21 25 25 C 1.52730 * 110.30516 * 155.00171 * 15 14 12 26 26 H 1.09004 * 109.92076 * 206.70247 * 25 15 14 27 27 C 1.53002 * 117.49495 * 231.07080 * 9 7 2 28 28 C 1.53000 * 117.49634 * 299.72669 * 9 7 2 29 29 H 0.97000 * 119.99844 * 5.06224 * 1 2 3 30 30 H 1.09002 * 109.47083 * 305.13709 * 10 9 7 31 31 H 1.09004 * 109.47178 * 185.14077 * 10 9 7 32 32 H 0.96998 * 119.99948 * 358.28511 * 11 10 9 33 33 H 0.97001 * 120.00327 * 0.02562 * 14 12 11 34 34 H 1.09004 * 110.06192 * 3.86803 * 17 15 14 35 35 H 1.08994 * 110.06307 * 125.37994 * 17 15 14 36 36 H 1.09006 * 110.75162 * 265.62929 * 18 17 15 37 37 H 1.09003 * 110.75666 * 142.26319 * 18 17 15 38 38 H 1.09004 * 109.11213 * 59.01816 * 22 21 19 39 39 H 1.08990 * 109.12080 * 178.15220 * 22 21 19 40 40 H 1.08998 * 109.11675 * 184.31970 * 23 22 21 41 41 H 1.08998 * 109.11322 * 303.39635 * 23 22 21 42 42 H 1.08994 * 117.50209 * 215.00127 * 27 9 7 43 43 H 1.08999 * 117.49780 * 0.02777 * 27 9 7 44 44 H 1.08995 * 117.50318 * 359.97438 * 28 9 7 45 45 H 1.09005 * 117.49722 * 144.97690 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0793 -1.1971 -0.1056 9 6 1.2580 -2.4951 0.1454 10 6 0.7019 -3.0859 -1.1517 11 7 1.8110 -3.4583 -2.0336 12 6 1.5596 -4.0345 -3.2258 13 8 0.4125 -4.2448 -3.5696 14 7 2.5799 -4.3766 -4.0373 15 6 2.3067 -5.0024 -5.3335 16 1 1.3727 -4.6221 -5.7471 17 6 2.2413 -6.5434 -5.1858 18 6 3.4279 -7.1151 -6.0096 19 6 4.4119 -5.9379 -6.0486 20 1 4.9300 -5.8218 -5.0966 21 16 5.5953 -6.0098 -7.4069 22 6 6.5281 -4.4671 -7.1843 23 6 5.6206 -3.2498 -7.3122 24 16 4.3698 -3.2175 -5.9968 25 6 3.4595 -4.7426 -6.3010 26 1 3.0954 -4.7681 -7.3281 27 6 1.7470 -3.4739 1.2149 28 6 0.4417 -2.7017 1.4228 29 1 -0.4850 0.8368 -0.0741 30 1 0.0752 -2.3455 -1.6489 31 1 0.1072 -3.9703 -0.9225 32 1 2.7261 -3.2902 -1.7594 33 1 3.4951 -4.2085 -3.7631 34 1 2.3449 -6.8233 -4.1375 35 1 1.2970 -6.9172 -5.5816 36 1 3.1059 -7.3827 -7.0161 37 1 3.8715 -7.9727 -5.5040 38 1 6.9877 -4.4674 -6.1959 39 1 7.3101 -4.4104 -7.9414 40 1 6.2257 -2.3454 -7.2499 41 1 5.1205 -3.2776 -8.2802 42 1 1.6724 -4.5388 0.9944 43 1 2.6082 -3.1767 1.8132 44 1 0.4449 -1.8970 2.1579 45 1 -0.4918 -3.2583 1.3390 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797504594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:58 Heat of formation + Delta-G solvation = -24.999040 kcal Electronic energy + Delta-G solvation = -25737.295318 eV Core-core repulsion = 22199.777094 eV Total energy + Delta-G solvation = -3537.518224 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.24317 -39.41898 -38.35177 -34.99571 -34.59115 -34.01203 -33.88295 -29.95164 -29.29177 -27.79340 -26.74281 -24.85015 -22.99190 -22.28080 -22.14771 -21.45688 -21.18224 -19.49795 -18.48926 -17.90064 -17.77097 -16.90841 -16.68597 -16.43686 -16.25557 -15.76291 -15.66558 -15.42661 -15.08480 -14.95157 -14.77959 -14.59401 -14.34191 -13.95513 -13.72980 -13.44869 -13.12878 -13.01361 -12.90127 -12.83839 -12.58550 -12.34112 -12.21661 -12.02575 -11.90492 -11.83720 -11.49893 -11.27635 -11.22444 -10.83620 -10.63336 -10.44743 -10.28056 -10.03241 -9.59848 -9.03633 -8.69118 -8.08344 -6.20971 0.46333 0.56604 1.33431 1.42118 1.44445 1.47831 1.52695 1.83161 2.25720 2.43360 3.05359 3.19878 3.31652 3.45834 3.63802 3.64661 3.76616 4.00019 4.09919 4.18005 4.23727 4.26708 4.28913 4.34683 4.48130 4.58225 4.61834 4.67278 4.73179 4.74746 4.77144 4.97438 5.00571 5.03168 5.09857 5.17531 5.29096 5.55452 5.61162 5.63630 5.73050 5.80395 6.11974 6.38718 6.85559 7.21591 7.48144 7.69100 8.99157 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.014308 B = 0.003094 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.528642 B = 9046.182243 C =10254.114499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.026 3.974 3 Si 0.948 3.052 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.503 4.503 8 H 0.062 0.938 9 C 0.007 3.993 10 C 0.201 3.799 11 N -0.715 5.715 12 C 0.700 3.300 13 O -0.641 6.641 14 N -0.724 5.724 15 C 0.184 3.816 16 H 0.079 0.921 17 C -0.122 4.122 18 C -0.085 4.085 19 C -0.056 4.056 20 H 0.104 0.896 21 S -0.254 6.254 22 C -0.081 4.081 23 C -0.083 4.083 24 S -0.260 6.260 25 C -0.067 4.067 26 H 0.118 0.882 27 C -0.175 4.175 28 C -0.158 4.158 29 H 0.258 0.742 30 H 0.024 0.976 31 H 0.033 0.967 32 H 0.405 0.595 33 H 0.406 0.594 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.679 -12.930 -15.579 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.175 4.175 3 Si 0.774 3.226 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.006 3.994 10 C 0.076 3.924 11 N -0.368 5.368 12 C 0.400 3.600 13 O -0.524 6.524 14 N -0.381 5.381 15 C 0.076 3.924 16 H 0.097 0.903 17 C -0.163 4.163 18 C -0.125 4.125 19 C -0.187 4.187 20 H 0.123 0.877 21 S -0.024 6.024 22 C -0.231 4.231 23 C -0.233 4.233 24 S -0.031 6.031 25 C -0.198 4.198 26 H 0.136 0.864 27 C -0.212 4.212 28 C -0.197 4.197 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.239 0.761 33 H 0.243 0.757 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.155 0.845 40 H 0.150 0.850 41 H 0.117 0.883 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.082 0.918 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.514 -12.952 -15.821 24.509 hybrid contribution 0.585 1.575 0.367 1.720 sum 14.099 -11.377 -15.454 23.813 Atomic orbital electron populations 1.70103 1.07232 1.27248 1.49889 1.25681 0.95429 1.01983 0.94426 0.85718 0.79042 0.79994 0.77856 1.20831 1.21485 1.18718 1.20636 0.93043 0.89615 1.50763 0.91983 1.19038 0.99701 0.94420 0.86268 1.20379 0.86935 0.95129 0.89910 1.44919 1.10916 1.63708 1.17232 1.16129 0.84720 0.78334 0.80843 1.90838 1.21716 1.63594 1.76244 1.45035 1.08124 1.66218 1.18700 1.21005 0.96505 0.93784 0.81110 0.90287 1.22971 0.99535 0.92469 1.01360 1.22100 0.92969 0.95700 1.01696 1.24252 0.96633 0.98158 0.99670 0.87745 1.86782 1.42737 1.31575 1.41283 1.23544 0.99733 0.91773 1.08006 1.23599 0.97699 1.02349 0.99639 1.87390 1.38709 1.31863 1.45110 1.24422 0.97347 0.94380 1.03689 0.86390 1.22997 0.97329 0.96254 1.04660 1.22431 0.93781 1.01396 1.02065 0.93280 0.95779 0.94851 0.76052 0.75685 0.90973 0.89838 0.89318 0.88752 0.88369 0.84459 0.84980 0.88270 0.89313 0.89588 0.91783 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.91 12.91 21.45 0.28 -51.63 16 2 C 0.03 1.37 5.39 84.66 0.46 1.82 16 3 Si 0.95 42.74 29.55 68.60 2.03 44.76 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.50 -25.87 8.63 25.60 0.22 -25.65 16 8 H 0.06 3.09 7.82 -2.91 -0.02 3.06 16 9 C 0.01 0.31 1.38 -52.93 -0.07 0.23 16 10 C 0.20 9.44 5.50 86.38 0.48 9.92 16 11 N -0.72 -28.29 5.48 -478.53 -2.62 -30.92 16 12 C 0.70 26.92 8.56 179.05 1.53 28.45 16 13 O -0.64 -29.87 15.99 -3.99 -0.06 -29.93 16 14 N -0.72 -20.39 4.43 -455.04 -2.02 -22.41 16 15 C 0.18 4.39 3.13 45.57 0.14 4.53 16 16 H 0.08 2.30 7.56 -2.39 -0.02 2.28 16 17 C -0.12 -2.32 6.66 32.07 0.21 -2.11 16 18 C -0.08 -1.18 6.42 31.56 0.20 -0.98 16 19 C -0.06 -0.86 2.75 31.40 0.09 -0.77 16 20 H 0.10 1.69 8.12 -2.39 -0.02 1.67 16 21 S -0.25 -3.67 21.66 -56.49 -1.22 -4.89 16 22 C -0.08 -0.86 6.23 71.77 0.45 -0.41 16 23 C -0.08 -1.04 6.22 71.77 0.45 -0.59 16 24 S -0.26 -5.32 20.04 -56.49 -1.13 -6.45 16 25 C -0.07 -1.25 2.49 31.15 0.08 -1.17 16 26 H 0.12 2.12 8.09 -2.39 -0.02 2.10 16 27 C -0.18 -6.96 9.96 30.62 0.30 -6.65 16 28 C -0.16 -7.24 9.42 30.62 0.29 -6.96 16 29 H 0.26 14.29 8.32 -92.71 -0.77 13.52 16 30 H 0.02 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.03 1.55 8.09 -2.38 -0.02 1.53 16 32 H 0.40 14.43 8.38 -92.71 -0.78 13.66 16 33 H 0.41 10.05 7.61 -92.71 -0.71 9.34 16 34 H 0.07 1.53 7.95 -2.38 -0.02 1.51 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.14 0.91 8.14 -2.40 -0.02 0.89 16 40 H 0.13 1.30 8.14 -2.40 -0.02 1.28 16 41 H 0.10 1.19 8.14 -2.40 -0.02 1.17 16 42 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 44 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 45 H 0.07 3.10 8.14 -2.38 -0.02 3.08 16 Total: -1.00 -65.61 383.77 -0.42 -66.03 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: -0.48 Total: 35.77 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 4.82 Total: -0.33 kcal Atomic # 7 Polarization: -100.60 SS G_CDS: -4.36 Total: -104.96 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.06 Total: -29.93 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -2.36 Total: -11.34 kcal Total: -65.61 -0.42 -66.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797504594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.027 kcal (2) G-P(sol) polarization free energy of solvation -65.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds