Wall clock time and date at job start Wed Apr 1 2020 01:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47084 * 2 1 4 4 C 1.52998 * 109.47233 * 239.99555 * 2 1 3 5 5 C 1.50703 * 109.46579 * 119.99762 * 2 1 3 6 6 N 1.29521 * 126.14847 * 59.98018 * 5 2 1 7 7 N 1.26238 * 116.58053 * 180.02562 * 6 5 2 8 8 C 1.29888 * 117.66289 * 359.97438 * 7 6 5 9 9 N 1.39075 * 125.65480 * 180.02562 * 8 7 6 10 10 C 1.34781 * 120.00279 * 0.02562 * 9 8 7 11 11 O 1.21287 * 119.99324 * 359.97438 * 10 9 8 12 12 C 1.50697 * 120.00143 * 179.72954 * 10 9 8 13 13 N 1.46500 * 109.46939 * 180.27297 * 12 10 9 14 14 C 1.36937 * 120.00139 * 269.99728 * 13 12 10 15 15 H 1.07997 * 119.99826 * 16.21736 * 14 13 12 16 16 C 1.38806 * 120.00058 * 196.22257 * 14 13 12 17 17 N 1.31619 * 120.00645 * 22.12645 * 16 14 13 18 18 Si 1.86804 * 119.99829 * 202.12390 * 16 14 13 19 19 H 1.48504 * 109.47127 * 90.00070 * 18 16 14 20 20 H 1.48502 * 109.47362 * 209.99780 * 18 16 14 21 21 H 1.48500 * 109.47253 * 330.00172 * 18 16 14 22 22 C 1.46503 * 120.00077 * 89.99392 * 13 12 10 23 23 C 1.50707 * 109.46899 * 84.01243 * 22 13 12 24 24 O 1.20826 * 119.99992 * 359.97438 * 23 22 13 25 25 O 1.34229 * 119.99797 * 180.02562 * 23 22 13 26 26 S 1.71305 * 108.69544 * 0.26499 * 8 7 6 27 27 H 1.09002 * 109.47213 * 300.00848 * 1 2 3 28 28 H 1.09002 * 109.47248 * 60.00288 * 1 2 3 29 29 H 1.08998 * 109.47686 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46881 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46954 * 299.99415 * 3 2 1 32 32 H 1.08995 * 109.47149 * 59.99560 * 3 2 1 33 33 H 1.09005 * 109.47142 * 300.00501 * 4 2 1 34 34 H 1.09002 * 109.46875 * 59.99929 * 4 2 1 35 35 H 1.08999 * 109.47379 * 180.02562 * 4 2 1 36 36 H 0.96998 * 120.00282 * 180.02562 * 9 8 7 37 37 H 1.08998 * 109.47040 * 300.26789 * 12 10 9 38 38 H 1.08997 * 109.47399 * 60.27264 * 12 10 9 39 39 H 0.97000 * 120.00496 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.46938 * 204.01048 * 22 13 12 41 41 H 1.08999 * 109.47060 * 324.01226 * 22 13 12 42 42 H 0.96699 * 116.99398 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2306 6 7 1.7935 -1.9420 1.5527 7 7 2.3069 -2.3538 2.6299 8 6 3.0237 -1.5152 3.3155 9 7 3.6635 -1.7907 4.5192 10 6 3.5664 -3.0175 5.0688 11 8 2.9206 -3.8811 4.5137 12 6 4.2647 -3.3177 6.3701 13 7 4.0118 -4.7097 6.7501 14 6 2.9266 -5.0217 7.5249 15 1 2.1225 -4.3100 7.6394 16 6 2.8602 -6.2526 8.1630 17 7 3.9626 -6.9319 8.3990 18 14 1.2063 -6.9450 8.6869 19 1 0.6414 -7.7649 7.5850 20 1 1.3841 -7.7924 9.8934 21 1 0.2784 -5.8283 8.9987 22 6 4.9199 -5.7681 6.3013 23 6 6.0947 -5.8541 7.2413 24 8 6.1663 -5.1076 8.1886 25 8 7.0620 -6.7594 7.0255 26 16 3.0450 -0.0118 2.4947 27 1 -0.3634 0.5140 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 1.6766 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 4.1797 -1.0999 4.9633 37 1 5.3370 -3.1626 6.2512 38 1 3.8856 -2.6542 7.1474 39 1 3.9161 -7.7922 8.8446 40 1 4.3909 -6.7212 6.2926 41 1 5.2747 -5.5403 5.2961 42 1 7.7956 -6.7764 7.6553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826528007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:39 Heat of formation + Delta-G solvation = -28.724389 kcal Electronic energy + Delta-G solvation = -27511.208374 eV Core-core repulsion = 23427.235392 eV Total energy + Delta-G solvation = -4083.972982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.20800 -39.41791 -38.71230 -37.30566 -35.72273 -34.72090 -34.37700 -31.59167 -30.08064 -28.31923 -27.73033 -27.55043 -26.87880 -25.75942 -23.23590 -22.11690 -20.68900 -20.13699 -19.60176 -18.38025 -17.38092 -16.92152 -16.77803 -16.33459 -15.97195 -15.35880 -15.12003 -14.98410 -14.73524 -14.22001 -14.18633 -14.11376 -13.61166 -13.34309 -13.30238 -13.21076 -12.67545 -12.60693 -12.00955 -11.99897 -11.88740 -11.67007 -11.42101 -11.34156 -11.16434 -11.03168 -10.84814 -10.68425 -10.42027 -10.24040 -10.14122 -10.09214 -10.02764 -9.62696 -9.55038 -9.20421 -8.62823 -8.55865 -7.23448 -6.01843 -3.34745 0.53894 0.59736 1.22314 2.65834 2.91456 3.24661 3.37302 3.44024 3.45806 3.77550 3.93378 4.23016 4.44287 4.49191 4.55671 4.71157 4.88197 5.14621 5.18573 5.23950 5.29565 5.34483 5.43319 5.50439 5.52938 5.58792 5.66192 5.77685 5.86265 5.99707 6.01245 6.05164 6.22866 6.30532 6.81703 6.95249 7.25702 7.61144 7.75870 8.02130 8.47211 8.83198 8.88990 9.32371 9.56409 9.95139 11.09529 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.017206 B = 0.002708 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.994257 B =10336.850878 C =11191.097338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.022 3.978 3 C -0.151 4.151 4 C -0.137 4.137 5 C 0.004 3.996 6 N -0.222 5.222 7 N -0.277 5.277 8 C 0.244 3.756 9 N -0.635 5.635 10 C 0.465 3.535 11 O -0.444 6.444 12 C 0.140 3.860 13 N -0.538 5.538 14 C -0.259 4.259 15 H 0.080 0.920 16 C 0.008 3.992 17 N -0.901 5.901 18 Si 0.914 3.086 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.278 1.278 22 C 0.188 3.812 23 C 0.481 3.519 24 O -0.516 6.516 25 O -0.541 6.541 26 S 0.075 5.925 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.419 0.581 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.260 0.740 40 H 0.119 0.881 41 H 0.054 0.946 42 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.370 17.451 -15.214 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.017 3.983 3 C -0.210 4.210 4 C -0.195 4.195 5 C -0.280 4.280 6 N -0.057 5.057 7 N -0.121 5.121 8 C -0.126 4.126 9 N -0.290 5.290 10 C 0.246 3.754 11 O -0.307 6.307 12 C 0.007 3.993 13 N -0.255 5.255 14 C -0.387 4.387 15 H 0.098 0.902 16 C -0.190 4.190 17 N -0.545 5.545 18 Si 0.744 3.256 19 H -0.210 1.210 20 H -0.218 1.218 21 H -0.204 1.204 22 C 0.059 3.941 23 C 0.321 3.679 24 O -0.403 6.403 25 O -0.351 6.351 26 S 0.315 5.685 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.256 0.744 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.070 0.930 40 H 0.136 0.864 41 H 0.072 0.928 42 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 0.498 16.365 -15.329 22.429 hybrid contribution 0.010 -0.126 1.263 1.269 sum 0.508 16.239 -14.066 21.490 Atomic orbital electron populations 1.21883 0.92104 1.03377 1.02209 1.19101 0.96494 0.93973 0.88683 1.22046 1.01668 0.94106 1.03138 1.21880 1.01319 1.01230 0.95108 1.29816 1.02686 0.94038 1.01412 1.71344 1.16657 1.09880 1.07776 1.71590 1.11901 1.26932 1.01684 1.26401 0.98060 0.93290 0.94856 1.44112 1.50481 1.16473 1.17937 1.24280 0.82282 0.79922 0.88904 1.90804 1.35813 1.43796 1.60322 1.20664 0.97991 0.89670 0.91004 1.43430 1.26851 0.99279 1.55892 1.19199 0.94828 1.01300 1.23355 0.90193 1.24816 0.97491 0.98603 0.98127 1.69861 1.25377 1.15348 1.43878 0.86104 0.83073 0.78976 0.77478 1.21029 1.21792 1.20359 1.20205 0.87051 0.96197 0.90599 1.25072 0.81245 0.75286 0.86340 1.90505 1.76117 1.43401 1.30227 1.84620 1.34460 1.59463 1.56574 1.84589 1.51778 1.13183 1.18910 0.92352 0.91414 0.91268 0.91826 0.90722 0.91829 0.91275 0.91413 0.92360 0.74354 0.90370 0.88937 0.93006 0.86357 0.92814 0.76144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.46 37.16 0.31 -0.80 16 2 C 0.02 0.19 0.99 -155.66 -0.15 0.04 16 3 C -0.15 -0.94 7.60 37.16 0.28 -0.66 16 4 C -0.14 -1.09 8.46 37.16 0.31 -0.78 16 5 C 0.00 0.05 6.10 -13.25 -0.08 -0.04 16 6 N -0.22 -3.69 11.65 33.58 0.39 -3.30 16 7 N -0.28 -5.27 9.74 29.97 0.29 -4.98 16 8 C 0.24 3.77 8.14 -87.06 -0.71 3.06 16 9 N -0.64 -9.04 5.41 -12.92 -0.07 -9.11 16 10 C 0.46 8.68 7.86 -10.99 -0.09 8.59 16 11 O -0.44 -10.55 15.11 5.55 0.08 -10.46 16 12 C 0.14 2.63 6.12 -5.20 -0.03 2.60 16 13 N -0.54 -12.99 1.52 -175.98 -0.27 -13.26 16 14 C -0.26 -6.96 9.66 -15.06 -0.15 -7.10 16 15 H 0.08 2.13 7.92 -52.49 -0.42 1.72 16 16 C 0.01 0.22 4.86 -17.43 -0.08 0.14 16 17 N -0.90 -25.33 9.31 55.49 0.52 -24.82 16 18 Si 0.91 22.11 29.61 -169.99 -5.03 17.07 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.19 4.44 5.49 -5.19 -0.03 4.41 16 23 C 0.48 11.21 6.54 36.01 0.24 11.44 16 24 O -0.52 -13.42 16.89 -18.75 -0.32 -13.73 16 25 O -0.54 -10.70 13.42 -39.25 -0.53 -11.23 16 26 S 0.07 0.81 21.98 -107.50 -2.36 -1.55 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.38 8.01 -51.93 -0.42 -0.03 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.39 8.00 -51.93 -0.42 -0.03 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.42 3.99 8.82 -40.82 -0.36 3.63 16 37 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 38 H 0.09 1.61 8.04 -51.93 -0.42 1.19 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.12 3.09 6.35 -51.93 -0.33 2.76 16 41 H 0.05 1.14 8.12 -51.93 -0.42 0.71 16 42 H 0.38 5.89 9.10 45.56 0.41 6.31 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -37.15 373.97 -6.71 -43.86 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.87 Total: 4.94 kcal Atomic # 6 Polarization: 21.09 SS G_CDS: -0.17 Total: 20.92 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.86 Total: -55.45 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -0.76 Total: -35.43 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.07 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.36 Total: -1.55 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.15 -6.71 -43.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826528007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.135 kcal (2) G-P(sol) polarization free energy of solvation -37.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds