Wall clock time and date at job start Wed Apr 1 2020 00:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34235 * 116.99786 * 2 1 4 4 O 1.20826 * 119.99965 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00205 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47295 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47179 * 179.97438 * 6 5 3 8 8 C 1.37099 * 120.00120 * 270.00556 * 7 6 5 9 9 H 1.07995 * 120.00411 * 129.49807 * 8 7 6 10 10 C 1.38956 * 119.99329 * 309.49298 * 8 7 6 11 11 N 1.31411 * 120.00127 * 4.14650 * 10 8 7 12 12 Si 1.86799 * 119.99560 * 184.15257 * 10 8 7 13 13 H 1.48500 * 109.47395 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47401 * 119.99838 * 12 10 8 15 15 H 1.48500 * 109.46938 * 239.99616 * 12 10 8 16 16 C 1.34773 * 119.99828 * 89.99517 * 7 6 5 17 17 O 1.21292 * 120.00283 * 355.75047 * 16 7 6 18 18 C 1.50701 * 120.00085 * 175.74529 * 16 7 6 19 19 F 1.39905 * 109.47053 * 82.00996 * 18 16 7 20 20 F 1.39909 * 109.47241 * 322.01350 * 18 16 7 21 21 C 1.50693 * 109.47559 * 202.01420 * 18 16 7 22 22 N 1.31886 * 119.61645 * 3.71249 * 21 18 16 23 23 C 1.31854 * 121.72643 * 179.97438 * 22 21 18 24 24 C 1.38226 * 120.76295 * 0.02562 * 23 22 21 25 25 C 1.38623 * 119.16551 * 0.02562 * 24 23 22 26 26 C 1.38181 * 119.62135 * 183.71237 * 21 18 16 27 27 C 1.50700 * 120.41823 * 0.02562 * 26 21 18 28 28 H 1.09006 * 109.46267 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46999 * 300.00045 * 1 2 3 30 30 H 1.08997 * 109.47284 * 60.00495 * 1 2 3 31 31 H 1.09004 * 109.47409 * 59.98839 * 5 3 2 32 32 H 1.09007 * 109.46942 * 299.99416 * 5 3 2 33 33 H 1.09000 * 109.46752 * 59.99558 * 6 5 3 34 34 H 1.08993 * 109.46671 * 299.99390 * 6 5 3 35 35 H 0.97003 * 119.99953 * 185.00156 * 11 10 8 36 36 H 1.08005 * 119.61826 * 179.97438 * 23 22 21 37 37 H 1.08007 * 120.41556 * 180.02562 * 24 23 22 38 38 H 1.07995 * 120.79519 * 180.02562 * 25 24 23 39 39 H 1.08999 * 109.46731 * 265.26560 * 27 26 21 40 40 H 1.09007 * 109.46997 * 25.26069 * 27 26 21 41 41 H 1.08999 * 109.47540 * 145.26051 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7423 -0.0011 7 7 5.4630 2.8191 -0.0011 8 6 6.1475 2.8553 1.1863 9 1 6.9694 2.1758 1.3567 10 6 5.7837 3.7665 2.1703 11 7 4.7337 4.5372 1.9963 12 14 6.7876 3.8959 3.7403 13 1 7.9107 2.9257 3.6912 14 1 7.3278 5.2730 3.8704 15 1 5.9218 3.5915 4.9078 16 6 6.1360 2.8538 -1.1682 17 8 5.5370 2.7440 -2.2172 18 6 7.6327 3.0293 -1.1701 19 9 8.2474 1.7940 -0.9384 20 9 7.9982 3.9283 -0.1622 21 6 8.0739 3.5670 -2.5069 22 7 7.1697 3.8720 -3.4173 23 6 7.5091 4.3457 -4.6001 24 6 8.8374 4.5402 -4.9293 25 6 9.8165 4.2299 -3.9983 26 6 9.4210 3.7349 -2.7647 27 6 10.4476 3.3833 -1.7190 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 3.9557 0.7810 -0.8907 32 1 3.9564 0.7808 0.8893 33 1 3.6105 3.2366 0.8889 34 1 3.6100 3.2361 -0.8911 35 1 4.5217 5.2227 2.6491 36 1 6.7403 4.5839 -5.3204 37 1 9.1090 4.9289 -5.8996 38 1 10.8623 4.3718 -4.2275 39 1 10.7086 4.2765 -1.1514 40 1 10.0368 2.6316 -1.0448 41 1 11.3398 2.9874 -2.2042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871343801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:57:55 Heat of formation + Delta-G solvation = -151.651844 kcal Electronic energy + Delta-G solvation = -31182.472432 eV Core-core repulsion = 26507.035778 eV Total energy + Delta-G solvation = -4675.436654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.122 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.46808 -46.31764 -40.08778 -39.99313 -38.38007 -36.14420 -35.04578 -33.48302 -32.30093 -31.94300 -30.71706 -28.12151 -27.45184 -26.24636 -25.06207 -23.89876 -22.47643 -21.64404 -20.27270 -19.45136 -18.08465 -17.51770 -17.18721 -16.85820 -16.18866 -16.11826 -16.04109 -15.73159 -15.31777 -14.76212 -14.48157 -14.23698 -14.13961 -13.76513 -13.50742 -13.40162 -13.16236 -12.96884 -12.76458 -12.66170 -12.59794 -12.46122 -12.14773 -12.01002 -11.95675 -11.86138 -11.59007 -11.25326 -11.12819 -10.95423 -10.69502 -10.50429 -10.31527 -10.03944 -9.97634 -9.66731 -9.41528 -9.00003 -8.83612 -8.34700 -7.51140 -6.37016 -4.28027 1.07240 1.41712 2.71465 3.06283 3.12005 3.22833 3.26660 3.51536 3.71411 3.90359 4.07443 4.28240 4.73603 4.85755 4.88357 4.93861 5.06698 5.15277 5.27091 5.33621 5.33978 5.39925 5.59108 5.65943 5.69621 5.73040 5.79172 5.80735 5.90001 6.05263 6.12997 6.21833 6.29680 6.32780 6.74155 6.76129 6.87910 7.30656 7.53899 7.86313 8.19688 8.22711 8.30044 8.99742 9.22438 9.69683 10.63005 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.010424 B = 0.004612 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.352863 B = 6069.478271 C = 7966.028884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.124 4.124 6 C 0.126 3.874 7 N -0.422 5.422 8 C -0.348 4.348 9 H 0.090 0.910 10 C 0.060 3.940 11 N -0.860 5.860 12 Si 0.915 3.085 13 H -0.264 1.264 14 H -0.277 1.277 15 H -0.280 1.280 16 C 0.448 3.552 17 O -0.529 6.529 18 C 0.355 3.645 19 F -0.186 7.186 20 F -0.161 7.161 21 C 0.072 3.928 22 N -0.397 5.397 23 C 0.084 3.916 24 C -0.157 4.157 25 C -0.090 4.090 26 C -0.100 4.100 27 C -0.131 4.131 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.065 0.935 35 H 0.273 0.727 36 H 0.158 0.842 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.354 -3.520 -6.701 9.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.310 3.690 4 O -0.391 6.391 5 C -0.163 4.163 6 C 0.002 3.998 7 N -0.141 5.141 8 C -0.476 4.476 9 H 0.108 0.892 10 C -0.148 4.148 11 N -0.495 5.495 12 Si 0.741 3.259 13 H -0.188 1.188 14 H -0.203 1.203 15 H -0.206 1.206 16 C 0.231 3.769 17 O -0.408 6.408 18 C 0.315 3.685 19 F -0.167 7.167 20 F -0.141 7.141 21 C -0.068 4.068 22 N -0.104 5.104 23 C -0.075 4.075 24 C -0.177 4.177 25 C -0.116 4.116 26 C -0.102 4.102 27 C -0.188 4.188 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.124 0.876 33 H 0.145 0.855 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.176 0.824 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.758 -3.294 -6.845 8.475 hybrid contribution 1.324 0.339 0.691 1.532 sum 5.082 -2.955 -6.153 8.511 Atomic orbital electron populations 1.23160 0.77430 1.02975 1.02321 1.86543 1.22699 1.34463 1.84698 1.24052 0.92351 0.80864 0.71715 1.90650 1.67252 1.36205 1.45030 1.21895 0.85862 1.03361 1.05209 1.21447 0.81491 0.90975 1.05841 1.43299 1.04700 1.62013 1.04125 1.19507 1.16343 1.19833 0.91913 0.89190 1.25567 0.95244 0.94363 0.99614 1.69675 1.23770 1.19211 1.36868 0.86048 0.80028 0.78758 0.81088 1.18837 1.20293 1.20579 1.20379 0.87400 0.83518 0.85594 1.90664 1.67239 1.52084 1.30828 1.19318 0.92175 0.74531 0.82511 1.92940 1.84395 1.44150 1.95170 1.93112 1.92603 1.67168 1.61233 1.21127 0.89647 1.00679 0.95351 1.67842 1.36478 1.05493 1.00627 1.22935 0.94908 0.95760 0.93858 1.22265 0.94497 1.00488 1.00422 1.21381 1.00138 0.97571 0.92489 1.20730 0.94896 0.98035 0.96579 1.21074 0.97002 1.03266 0.97436 0.88676 0.92161 0.92208 0.88574 0.87624 0.85544 0.91698 0.91633 0.82449 0.84687 0.84576 0.90217 0.89569 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.11 10.57 -39.27 -0.41 -6.53 16 3 C 0.47 9.14 7.96 36.00 0.29 9.43 16 4 O -0.50 -11.13 15.73 -18.75 -0.29 -11.43 16 5 C -0.12 -2.53 6.13 -27.88 -0.17 -2.70 16 6 C 0.13 3.05 4.25 -4.04 -0.02 3.03 16 7 N -0.42 -10.66 2.48 -114.81 -0.29 -10.95 16 8 C -0.35 -8.80 6.75 -14.93 -0.10 -8.90 16 9 H 0.09 2.23 7.70 -52.49 -0.40 1.83 16 10 C 0.06 1.50 5.38 -17.47 -0.09 1.41 16 11 N -0.86 -22.81 11.07 55.50 0.61 -22.20 16 12 Si 0.92 19.63 29.56 -169.99 -5.02 14.61 16 13 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 16 C 0.45 11.20 7.00 -10.99 -0.08 11.12 16 17 O -0.53 -13.78 13.98 5.55 0.08 -13.70 16 18 C 0.36 7.91 1.12 -29.04 -0.03 7.88 16 19 F -0.19 -3.88 14.72 2.25 0.03 -3.84 16 20 F -0.16 -3.69 14.25 2.25 0.03 -3.66 16 21 C 0.07 1.44 6.12 -82.59 -0.51 0.94 16 22 N -0.40 -8.14 7.43 -9.47 -0.07 -8.21 16 23 C 0.08 1.30 11.18 -17.55 -0.20 1.10 16 24 C -0.16 -1.92 10.11 -39.44 -0.40 -2.32 16 25 C -0.09 -1.14 9.88 -39.28 -0.39 -1.53 16 26 C -0.10 -1.60 5.85 -104.48 -0.61 -2.21 16 27 C -0.13 -1.78 9.22 36.01 0.33 -1.45 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.10 1.91 8.14 -51.93 -0.42 1.48 16 32 H 0.11 2.03 8.14 -51.93 -0.42 1.61 16 33 H 0.13 3.34 5.53 -51.93 -0.29 3.05 16 34 H 0.06 1.67 7.44 -51.93 -0.39 1.29 16 35 H 0.27 6.86 8.32 -40.82 -0.34 6.52 16 36 H 0.16 1.99 8.06 -52.48 -0.42 1.57 16 37 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 38 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.09 1.32 5.20 -51.92 -0.27 1.05 16 41 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 LS Contribution 357.94 15.07 5.39 5.39 Total: -1.00 -31.93 357.94 -5.56 -37.49 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -4.71 Total: 5.70 kcal Atomic # 6 Polarization: 18.23 SS G_CDS: -0.91 Total: 17.33 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.26 Total: -41.36 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.63 Total: -31.66 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 0.07 Total: -7.50 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.93 -5.56 -37.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.163 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds