Wall clock time and date at job start Wed Apr 1 2020 00:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99704 * 2 1 4 4 C 1.53002 * 109.46765 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46862 * 64.52068 * 4 3 2 6 6 C 1.46501 * 119.99715 * 275.24261 * 5 4 3 7 7 C 1.50705 * 109.46997 * 275.00265 * 6 5 4 8 8 H 1.07991 * 119.99960 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99859 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99742 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99626 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47040 * 90.00599 * 11 9 7 13 13 H 1.48499 * 109.46899 * 209.99965 * 11 9 7 14 14 H 1.48501 * 109.47355 * 330.00101 * 11 9 7 15 15 S 1.65596 * 120.00495 * 95.24208 * 5 4 3 16 16 O 1.42095 * 106.40362 * 151.29590 * 15 5 4 17 17 O 1.42101 * 106.39769 * 18.37439 * 15 5 4 18 18 N 1.65598 * 107.21797 * 264.83827 * 15 5 4 19 19 C 1.46502 * 119.99751 * 297.83835 * 18 15 5 20 20 C 1.53006 * 112.90662 * 307.64617 * 19 18 15 21 21 C 1.53779 * 113.61216 * 176.39791 * 19 18 15 22 22 C 1.53779 * 87.08085 * 270.88109 * 21 19 18 23 23 F 1.39904 * 113.61237 * 89.11935 * 22 21 19 24 24 F 1.39902 * 113.61570 * 220.01829 * 22 21 19 25 25 C 1.53776 * 87.08205 * 334.56792 * 22 21 19 26 26 H 1.09007 * 109.47310 * 299.99749 * 1 2 3 27 27 H 1.09007 * 109.47074 * 59.99689 * 1 2 3 28 28 H 1.09004 * 109.47374 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46818 * 60.00783 * 3 2 1 30 30 H 1.08997 * 109.47553 * 300.00061 * 3 2 1 31 31 H 1.08998 * 109.47112 * 304.51574 * 4 3 2 32 32 H 1.09001 * 109.46742 * 184.51607 * 4 3 2 33 33 H 1.09003 * 109.46977 * 34.99846 * 6 5 4 34 34 H 1.09001 * 109.47450 * 155.00041 * 6 5 4 35 35 H 0.97000 * 119.99746 * 180.02562 * 10 9 7 36 36 H 0.97003 * 120.00316 * 117.84567 * 18 15 5 37 37 H 1.08994 * 109.47549 * 297.66974 * 20 19 18 38 38 H 1.08996 * 109.46589 * 57.67324 * 20 19 18 39 39 H 1.09006 * 109.46933 * 177.66629 * 20 19 18 40 40 H 1.09008 * 113.61158 * 156.33695 * 21 19 18 41 41 H 1.09002 * 113.61840 * 25.43832 * 21 19 18 42 42 H 1.08998 * 113.61399 * 139.97390 * 25 22 21 43 43 H 1.08999 * 113.61784 * 270.88040 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9757 0.5536 -1.2460 6 6 3.9953 -0.9068 -1.3604 7 6 5.2913 -1.4370 -0.8033 8 1 6.0269 -0.7544 -0.4043 9 6 5.5379 -2.7936 -0.8030 10 7 4.6418 -3.6249 -1.2884 11 14 7.1446 -3.4507 -0.1130 12 1 6.9829 -3.7314 1.3362 13 1 7.5123 -4.7028 -0.8216 14 1 8.2158 -2.4403 -0.3051 15 16 4.4513 1.4908 -2.5257 16 8 5.3990 0.7232 -3.2549 17 8 4.7362 2.7783 -1.9960 18 7 3.1361 1.6729 -3.5153 19 6 2.5279 0.5002 -4.1485 20 6 3.5415 -0.3611 -4.9047 21 6 1.2659 0.8258 -4.9646 22 6 0.4670 0.6069 -3.6690 23 9 0.3246 1.7643 -2.8961 24 9 -0.7418 -0.0701 -3.8635 25 6 1.6162 -0.3047 -3.2074 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6886 1.8463 0.8901 30 1 1.6886 1.8465 -0.8899 31 1 3.8513 0.5757 0.8476 32 1 3.9784 2.1773 0.0816 33 1 3.1601 -1.3265 -0.7997 34 1 3.9078 -1.1903 -2.4093 35 1 4.8151 -4.5793 -1.2879 36 1 2.7685 2.5561 -3.6759 37 1 3.9803 0.2211 -5.7149 38 1 4.3273 -0.6821 -4.2209 39 1 3.0389 -1.2362 -5.3169 40 1 1.0472 0.0931 -5.7415 41 1 1.2343 1.8527 -5.3289 42 1 1.8675 -0.1904 -2.1529 43 1 1.4933 -1.3464 -3.5038 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872667182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:25 Heat of formation + Delta-G solvation = -188.629615 kcal Electronic energy + Delta-G solvation = -32069.430073 eV Core-core repulsion = 27527.833894 eV Total energy + Delta-G solvation = -4541.596179 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.75679 -47.08516 -39.07189 -37.82217 -36.63163 -35.38914 -35.19726 -32.51194 -32.25872 -29.57239 -28.76813 -26.76032 -26.33546 -25.67477 -22.82051 -22.58270 -21.80194 -20.15138 -18.62871 -17.53320 -17.38844 -17.09947 -16.60376 -16.20305 -16.03827 -15.96534 -15.74854 -15.61594 -14.83346 -14.53984 -14.38262 -13.92953 -13.58885 -13.47202 -13.35527 -13.17555 -12.95955 -12.70967 -12.47095 -12.21996 -12.19497 -12.04827 -11.97356 -11.65202 -11.48196 -11.43194 -11.25817 -11.10742 -11.02927 -10.84812 -10.60812 -10.42416 -10.36535 -10.18550 -9.99013 -9.64844 -9.39605 -9.29513 -8.37456 -8.05478 -6.01025 -4.03008 1.17151 3.34099 3.35981 3.40798 3.46765 3.50271 3.82632 4.03361 4.10228 4.23274 4.38753 4.48747 4.52128 4.95854 5.21411 5.33661 5.35671 5.35888 5.38275 5.46853 5.49151 5.54505 5.59545 5.65496 5.67792 5.76640 5.90253 6.03867 6.09253 6.25652 6.27370 6.37556 6.49403 6.77704 7.08805 7.39329 7.45339 7.49948 7.72252 7.97117 8.28393 8.98492 9.60861 11.07246 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.005687 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.075831 B = 4922.503718 C = 5182.198478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.037 3.963 4 C 0.124 3.876 5 N -0.985 5.985 6 C 0.252 3.748 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.064 3.936 10 N -0.894 5.894 11 Si 0.892 3.108 12 H -0.282 1.282 13 H -0.286 1.286 14 H -0.274 1.274 15 S 2.779 3.221 16 O -0.956 6.956 17 O -0.999 6.999 18 N -1.115 6.115 19 C 0.166 3.834 20 C -0.169 4.169 21 C -0.159 4.159 22 C 0.252 3.748 23 F -0.180 7.180 24 F -0.193 7.193 25 C -0.195 4.195 26 H 0.035 0.965 27 H 0.036 0.964 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.038 0.962 35 H 0.262 0.738 36 H 0.411 0.589 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.071 0.929 40 H 0.123 0.877 41 H 0.094 0.906 42 H 0.133 0.867 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.600 8.932 -4.633 14.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.283 6.283 3 C -0.042 4.042 4 C -0.004 4.004 5 N -0.827 5.827 6 C 0.130 3.870 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.138 4.138 10 N -0.533 5.533 11 Si 0.721 3.279 12 H -0.208 1.208 13 H -0.212 1.212 14 H -0.199 1.199 15 S 2.787 3.213 16 O -0.939 6.939 17 O -0.984 6.984 18 N -0.871 5.871 19 C 0.075 3.925 20 C -0.227 4.227 21 C -0.198 4.198 22 C 0.216 3.784 23 F -0.161 7.161 24 F -0.174 7.174 25 C -0.234 4.234 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.244 0.756 37 H 0.084 0.916 38 H 0.127 0.873 39 H 0.090 0.910 40 H 0.141 0.859 41 H 0.113 0.887 42 H 0.151 0.849 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.585 8.764 -4.777 13.839 hybrid contribution -0.297 0.139 0.459 0.564 sum -9.882 8.903 -4.318 13.985 Atomic orbital electron populations 1.22745 0.82360 1.02470 0.99353 1.88092 1.18390 1.26939 1.94916 1.23229 0.95552 0.85427 0.99987 1.21285 0.90793 0.99072 0.89205 1.57664 1.81443 1.19219 1.24378 1.19322 0.98270 0.71341 0.98041 1.21501 1.02692 0.91982 1.40259 0.92377 1.24866 0.96760 0.96789 0.95415 1.69909 1.34387 1.02972 1.46041 0.86586 0.84102 0.78410 0.78851 1.20787 1.21230 1.19858 1.02080 0.73474 0.72541 0.73229 1.93614 1.57967 1.70847 1.71482 1.93531 1.83871 1.41548 1.79428 1.56080 1.52715 1.13469 1.64878 1.20667 0.92496 0.86231 0.93067 1.22402 0.99771 0.98638 1.01898 1.24424 0.93706 1.05328 0.96341 1.22143 0.80933 0.81758 0.93564 1.92969 1.96232 1.50206 1.76675 1.92991 1.49389 1.79639 1.95406 1.25133 0.91610 1.00351 1.06292 0.94661 0.94589 0.89828 0.92998 0.93420 0.88566 0.88905 0.92722 0.94408 0.92878 0.75567 0.91570 0.87346 0.90991 0.85905 0.88727 0.84865 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.37 -5.99 7.15 -35.23 -0.25 -6.24 16 3 C 0.04 0.54 5.70 37.16 0.21 0.76 16 4 C 0.12 2.09 6.11 -4.04 -0.02 2.07 16 5 N -0.99 -19.33 2.00 -115.66 -0.23 -19.56 16 6 C 0.25 5.85 3.03 -5.19 -0.02 5.84 16 7 C -0.52 -14.13 9.38 -34.44 -0.32 -14.45 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -25.01 13.29 55.43 0.74 -24.28 16 11 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 S 2.78 52.44 5.99 -107.50 -0.64 51.80 16 16 O -0.96 -21.20 14.16 -57.17 -0.81 -22.00 16 17 O -1.00 -19.86 16.60 -57.17 -0.95 -20.81 16 18 N -1.11 -16.16 5.37 1.20 0.01 -16.15 16 19 C 0.17 2.29 1.18 -131.00 -0.15 2.13 16 20 C -0.17 -2.53 8.17 37.16 0.30 -2.22 16 21 C -0.16 -1.69 7.13 -25.92 -0.18 -1.88 16 22 C 0.25 3.27 3.27 -25.92 -0.08 3.18 16 23 F -0.18 -2.42 15.15 2.25 0.03 -2.38 16 24 F -0.19 -2.62 17.41 2.25 0.04 -2.58 16 25 C -0.19 -2.86 5.79 -25.92 -0.15 -3.01 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.04 0.47 7.27 -51.92 -0.38 0.09 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.68 7.12 -51.93 -0.37 0.31 16 31 H 0.10 1.69 8.11 -51.93 -0.42 1.27 16 32 H 0.09 1.45 6.87 -51.93 -0.36 1.09 16 33 H 0.05 1.34 6.37 -51.93 -0.33 1.01 16 34 H 0.04 0.90 4.67 -51.93 -0.24 0.66 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.41 4.93 8.76 -34.47 -0.30 4.63 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.11 2.08 4.20 -51.93 -0.22 1.86 16 39 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 40 H 0.12 1.08 8.10 -51.92 -0.42 0.66 16 41 H 0.09 0.85 8.11 -51.93 -0.42 0.43 16 42 H 0.13 2.20 2.75 -51.93 -0.14 2.06 16 43 H 0.12 1.78 8.09 -51.93 -0.42 1.36 16 LS Contribution 351.47 15.07 5.30 5.30 Total: -1.00 -31.87 351.47 -6.88 -38.75 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.68 Total: 6.14 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 0.59 Total: -4.46 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.51 Total: -59.99 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -2.01 Total: -49.05 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.07 Total: -4.97 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 52.44 SS G_CDS: -0.64 Total: 51.80 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.87 -6.88 -38.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872667182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.877 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds