Wall clock time and date at job start Wed Apr 1 2020 00:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99704 * 2 1 4 4 C 1.53002 * 109.46765 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46862 * 64.52068 * 4 3 2 6 6 C 1.46501 * 119.99715 * 275.24261 * 5 4 3 7 7 C 1.50705 * 109.46997 * 275.00265 * 6 5 4 8 8 H 1.07991 * 119.99960 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99859 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99742 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99626 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47040 * 90.00599 * 11 9 7 13 13 H 1.48499 * 109.46899 * 209.99965 * 11 9 7 14 14 H 1.48501 * 109.47355 * 330.00101 * 11 9 7 15 15 S 1.65596 * 120.00495 * 95.24208 * 5 4 3 16 16 O 1.42095 * 106.40362 * 151.29590 * 15 5 4 17 17 O 1.42101 * 106.39769 * 18.37439 * 15 5 4 18 18 N 1.65598 * 107.21797 * 264.83827 * 15 5 4 19 19 C 1.46502 * 119.99751 * 297.83835 * 18 15 5 20 20 C 1.53006 * 112.90662 * 307.64617 * 19 18 15 21 21 C 1.53779 * 113.61216 * 176.39791 * 19 18 15 22 22 C 1.53779 * 87.08085 * 270.88109 * 21 19 18 23 23 F 1.39904 * 113.61237 * 89.11935 * 22 21 19 24 24 F 1.39902 * 113.61570 * 220.01829 * 22 21 19 25 25 C 1.53776 * 87.08205 * 334.56792 * 22 21 19 26 26 H 1.09007 * 109.47310 * 299.99749 * 1 2 3 27 27 H 1.09007 * 109.47074 * 59.99689 * 1 2 3 28 28 H 1.09004 * 109.47374 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46818 * 60.00783 * 3 2 1 30 30 H 1.08997 * 109.47553 * 300.00061 * 3 2 1 31 31 H 1.08998 * 109.47112 * 304.51574 * 4 3 2 32 32 H 1.09001 * 109.46742 * 184.51607 * 4 3 2 33 33 H 1.09003 * 109.46977 * 34.99846 * 6 5 4 34 34 H 1.09001 * 109.47450 * 155.00041 * 6 5 4 35 35 H 0.97000 * 119.99746 * 180.02562 * 10 9 7 36 36 H 0.97003 * 120.00316 * 117.84567 * 18 15 5 37 37 H 1.08994 * 109.47549 * 297.66974 * 20 19 18 38 38 H 1.08996 * 109.46589 * 57.67324 * 20 19 18 39 39 H 1.09006 * 109.46933 * 177.66629 * 20 19 18 40 40 H 1.09008 * 113.61158 * 156.33695 * 21 19 18 41 41 H 1.09002 * 113.61840 * 25.43832 * 21 19 18 42 42 H 1.08998 * 113.61399 * 139.97390 * 25 22 21 43 43 H 1.08999 * 113.61784 * 270.88040 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9757 0.5536 -1.2460 6 6 3.9953 -0.9068 -1.3604 7 6 5.2913 -1.4370 -0.8033 8 1 6.0269 -0.7544 -0.4043 9 6 5.5379 -2.7936 -0.8030 10 7 4.6418 -3.6249 -1.2884 11 14 7.1446 -3.4507 -0.1130 12 1 6.9829 -3.7314 1.3362 13 1 7.5123 -4.7028 -0.8216 14 1 8.2158 -2.4403 -0.3051 15 16 4.4513 1.4908 -2.5257 16 8 5.3990 0.7232 -3.2549 17 8 4.7362 2.7783 -1.9960 18 7 3.1361 1.6729 -3.5153 19 6 2.5279 0.5002 -4.1485 20 6 3.5415 -0.3611 -4.9047 21 6 1.2659 0.8258 -4.9646 22 6 0.4670 0.6069 -3.6690 23 9 0.3246 1.7643 -2.8961 24 9 -0.7418 -0.0701 -3.8635 25 6 1.6162 -0.3047 -3.2074 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6886 1.8463 0.8901 30 1 1.6886 1.8465 -0.8899 31 1 3.8513 0.5757 0.8476 32 1 3.9784 2.1773 0.0816 33 1 3.1601 -1.3265 -0.7997 34 1 3.9078 -1.1903 -2.4093 35 1 4.8151 -4.5793 -1.2879 36 1 2.7685 2.5561 -3.6759 37 1 3.9803 0.2211 -5.7149 38 1 4.3273 -0.6821 -4.2209 39 1 3.0389 -1.2362 -5.3169 40 1 1.0472 0.0931 -5.7415 41 1 1.2343 1.8527 -5.3289 42 1 1.8675 -0.1904 -2.1529 43 1 1.4933 -1.3464 -3.5038 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872667182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:23 Heat of formation + Delta-G solvation = -211.727435 kcal Electronic energy + Delta-G solvation = -32070.431670 eV Core-core repulsion = 27527.833894 eV Total energy + Delta-G solvation = -4542.597776 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.78066 -48.11230 -40.18503 -39.06748 -38.19594 -36.93900 -36.79313 -34.49733 -33.45993 -31.05425 -29.93406 -28.41438 -27.34964 -26.96952 -24.52903 -23.67211 -23.27107 -21.31126 -20.02228 -19.03431 -18.57082 -18.49715 -18.11220 -17.59116 -17.34181 -17.13995 -16.98589 -16.86068 -16.39473 -15.98100 -15.78354 -15.10623 -14.93382 -14.63466 -14.47034 -14.41470 -14.29787 -14.19685 -13.75890 -13.68962 -13.50274 -13.35607 -13.29889 -13.15113 -12.91823 -12.85991 -12.75516 -12.71350 -12.50753 -12.27879 -12.19527 -11.92563 -11.83775 -11.69019 -11.54955 -11.17622 -10.61379 -10.52601 -10.39041 -9.71656 -8.09613 -6.17580 -0.31792 1.41464 1.43335 1.53037 1.96285 2.45489 2.49972 2.62320 2.82581 2.96643 3.19764 3.21970 3.30286 3.44972 3.56945 3.94090 4.10465 4.21317 4.36962 4.44245 4.45938 4.49173 4.56056 4.57497 4.60930 4.65110 4.84718 4.88510 4.92708 4.99131 5.08350 5.10176 5.22049 5.41426 5.58014 5.66130 5.81770 5.96851 6.15858 6.26940 6.38876 6.89902 7.48616 8.97001 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.005687 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.075831 B = 4922.503718 C = 5182.198478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.393 6.393 3 C 0.041 3.959 4 C 0.116 3.884 5 N -0.990 5.990 6 C 0.275 3.725 7 C -0.544 4.544 8 H 0.046 0.954 9 C 0.018 3.982 10 N -0.916 5.916 11 Si 0.944 3.056 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.278 1.278 15 S 2.792 3.208 16 O -0.993 6.993 17 O -1.011 7.011 18 N -1.097 6.097 19 C 0.157 3.843 20 C -0.169 4.169 21 C -0.134 4.134 22 C 0.254 3.746 23 F -0.183 7.183 24 F -0.196 7.196 25 C -0.210 4.210 26 H 0.055 0.945 27 H 0.037 0.963 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.040 0.960 34 H 0.032 0.968 35 H 0.264 0.736 36 H 0.426 0.574 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.149 0.851 41 H 0.121 0.879 42 H 0.115 0.885 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.831 9.947 -5.368 16.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.312 6.312 3 C -0.037 4.037 4 C -0.010 4.010 5 N -0.831 5.831 6 C 0.152 3.848 7 C -0.583 4.583 8 H 0.064 0.936 9 C -0.181 4.181 10 N -0.556 5.556 11 Si 0.771 3.229 12 H -0.198 1.198 13 H -0.206 1.206 14 H -0.203 1.203 15 S 2.800 3.200 16 O -0.976 6.976 17 O -0.995 6.995 18 N -0.859 5.859 19 C 0.068 3.932 20 C -0.227 4.227 21 C -0.173 4.173 22 C 0.218 3.782 23 F -0.163 7.163 24 F -0.177 7.177 25 C -0.249 4.249 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.124 0.876 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.262 0.738 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.167 0.833 41 H 0.139 0.861 42 H 0.134 0.866 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.825 9.809 -5.491 15.606 hybrid contribution 0.053 -0.161 0.704 0.724 sum -10.773 9.648 -4.787 15.234 Atomic orbital electron populations 1.22835 0.80840 1.02913 1.00357 1.88055 1.20131 1.27874 1.95161 1.23180 0.93698 0.85261 1.01549 1.21470 0.92819 0.99075 0.87660 1.57529 1.81905 1.17799 1.25880 1.18806 0.95814 0.73245 0.96914 1.21879 1.03950 0.92246 1.40243 0.93601 1.25542 0.99505 0.97194 0.95905 1.69987 1.35661 1.03143 1.46848 0.85771 0.80696 0.77763 0.78709 1.19822 1.20585 1.20276 1.01451 0.73711 0.71750 0.73044 1.93583 1.60142 1.71644 1.72223 1.93505 1.84483 1.41706 1.79839 1.55592 1.51720 1.14706 1.63867 1.20756 0.93176 0.85713 0.93581 1.22355 0.99080 0.99915 1.01394 1.24396 0.89727 1.07764 0.95396 1.22133 0.80387 0.81169 0.94536 1.92963 1.96214 1.50139 1.77031 1.92988 1.49503 1.79791 1.95419 1.25188 0.93278 1.00946 1.05537 0.92654 0.94436 0.89784 0.90237 0.92821 0.89926 0.87618 0.94248 0.95061 0.92738 0.73766 0.90278 0.91780 0.89072 0.83310 0.86090 0.86638 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.39 -12.72 7.15 -148.98 -1.06 -13.78 16 3 C 0.04 1.18 5.70 71.98 0.41 1.59 16 4 C 0.12 3.92 6.11 86.38 0.53 4.45 16 5 N -0.99 -39.36 2.00 -519.82 -1.04 -40.40 16 6 C 0.28 13.16 3.03 85.63 0.26 13.42 16 7 C -0.54 -30.06 9.38 25.60 0.24 -29.82 16 8 H 0.05 2.58 7.81 -2.91 -0.02 2.55 16 9 C 0.02 1.01 5.46 84.66 0.46 1.47 16 10 N -0.92 -52.12 13.29 21.45 0.28 -51.83 16 11 Si 0.94 44.56 29.54 68.60 2.03 46.59 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 14 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 15 S 2.79 105.29 5.99 -56.49 -0.34 104.95 16 16 O -0.99 -44.95 14.16 -128.00 -1.81 -46.76 16 17 O -1.01 -39.56 16.60 -128.00 -2.12 -41.69 16 18 N -1.10 -30.24 5.37 -150.13 -0.81 -31.05 16 19 C 0.16 4.09 1.18 4.13 0.00 4.09 16 20 C -0.17 -4.92 8.17 71.98 0.59 -4.33 16 21 C -0.13 -2.38 7.13 31.12 0.22 -2.16 16 22 C 0.25 5.96 3.27 31.12 0.10 6.06 16 23 F -0.18 -4.44 15.15 44.97 0.68 -3.76 16 24 F -0.20 -4.86 17.41 44.97 0.78 -4.08 16 25 C -0.21 -5.98 5.79 31.12 0.18 -5.80 16 26 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.04 0.92 7.27 -2.38 -0.02 0.90 16 28 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.05 1.45 7.12 -2.39 -0.02 1.43 16 31 H 0.08 2.98 8.11 -2.39 -0.02 2.96 16 32 H 0.11 3.25 6.87 -2.39 -0.02 3.23 16 33 H 0.04 2.00 6.37 -2.39 -0.02 1.99 16 34 H 0.03 1.55 4.67 -2.39 -0.01 1.54 16 35 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 36 H 0.43 9.18 8.76 -96.74 -0.85 8.34 16 37 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.06 2.51 4.20 -2.39 -0.01 2.50 16 39 H 0.09 2.22 8.13 -2.38 -0.02 2.20 16 40 H 0.15 1.95 8.10 -2.38 -0.02 1.93 16 41 H 0.12 1.59 8.11 -2.39 -0.02 1.57 16 42 H 0.12 3.79 2.75 -2.39 -0.01 3.78 16 43 H 0.12 3.46 8.09 -2.39 -0.02 3.44 16 Total: -1.00 -69.41 351.47 1.04 -68.37 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.21 Total: 22.54 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 4.25 Total: -9.09 kcal Atomic # 7 Polarization: -121.72 SS G_CDS: -1.56 Total: -123.28 kcal Atomic # 8 Polarization: -97.23 SS G_CDS: -5.00 Total: -102.24 kcal Atomic # 9 Polarization: -9.30 SS G_CDS: 1.46 Total: -7.84 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 105.29 SS G_CDS: -0.34 Total: 104.95 kcal Total: -69.41 1.04 -68.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872667182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.357 kcal (2) G-P(sol) polarization free energy of solvation -69.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds