Wall clock time and date at job start Wed Apr 1 2020 00:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38763 * 119.89408 * 2 1 4 4 C 1.37276 * 120.33965 * 179.97438 * 3 2 1 5 5 C 1.40690 * 120.27780 * 0.02894 * 4 3 2 6 6 C 1.46374 * 129.79146 * 179.97438 * 5 4 3 7 7 C 1.46824 * 123.03665 * 359.97438 * 6 5 4 8 8 O 1.21683 * 119.99769 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00443 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00128 * 180.02562 * 9 7 6 11 11 H 1.08996 * 115.52057 * 9.57935 * 10 9 7 12 12 C 1.53005 * 117.40364 * 224.22756 * 10 9 7 13 13 H 1.09002 * 119.54133 * 4.10038 * 12 10 9 14 14 C 1.54388 * 118.11953 * 160.79251 * 12 10 9 15 15 N 1.48147 * 104.61527 * 87.19121 * 14 12 10 16 16 C 1.36944 * 127.83511 * 140.41382 * 15 14 12 17 17 H 1.07995 * 120.00220 * 359.97438 * 16 15 14 18 18 C 1.38816 * 119.99397 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00462 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99395 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47385 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46869 * 119.99890 * 20 18 16 23 23 H 1.48507 * 109.46865 * 239.99630 * 20 18 16 24 24 C 1.51827 * 104.55132 * 320.13659 * 15 14 12 25 25 C 1.53001 * 117.44114 * 155.00200 * 10 9 7 26 26 H 1.09002 * 119.53987 * 355.83432 * 25 10 9 27 27 C 1.33918 * 113.93291 * 180.26823 * 6 5 4 28 28 S 1.70023 * 112.23984 * 359.57881 * 27 6 5 29 29 C 1.39439 * 119.16458 * 359.97438 * 5 4 3 30 30 C 1.37495 * 119.89567 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.47227 * 90.00217 * 1 2 3 32 32 H 1.09001 * 109.47114 * 209.99284 * 1 2 3 33 33 H 1.08999 * 109.47569 * 330.00033 * 1 2 3 34 34 H 1.08004 * 119.82890 * 359.97438 * 3 2 1 35 35 H 1.08001 * 119.86404 * 180.02562 * 4 3 2 36 36 H 0.97006 * 119.99480 * 0.02562 * 9 7 6 37 37 H 1.09005 * 110.40063 * 205.97149 * 14 12 10 38 38 H 1.08991 * 110.41105 * 328.40677 * 14 12 10 39 39 H 0.96998 * 120.00080 * 180.02562 * 19 18 16 40 40 H 1.08997 * 110.21952 * 281.99947 * 24 15 14 41 41 H 1.09001 * 112.25708 * 158.41268 * 24 15 14 42 42 H 1.08008 * 123.87835 * 179.73403 * 27 6 5 43 43 H 1.07995 * 119.84595 * 0.04955 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.2030 0.0000 4 6 3.5713 1.2137 0.0005 5 6 4.2901 0.0042 0.0005 6 6 5.7356 -0.2265 0.0005 7 6 6.7200 0.8629 0.0000 8 8 6.3460 2.0208 0.0000 9 7 8.0378 0.5803 0.0005 10 6 9.0200 1.6673 0.0006 11 1 8.6152 2.6660 0.1639 12 6 10.2147 1.5370 -0.9464 13 1 10.2678 0.6906 -1.6313 14 6 11.0017 2.8158 -1.3053 15 7 12.0136 2.9457 -0.2311 16 6 13.3203 3.3375 -0.3510 17 1 13.7199 3.5956 -1.3206 18 6 14.1315 3.4019 0.7736 19 7 13.6447 3.0870 1.9552 20 14 15.9138 3.9371 0.6102 21 1 16.2127 4.2348 -0.8136 22 1 16.1422 5.1544 1.4295 23 1 16.8034 2.8468 1.0848 24 6 11.2764 2.5537 1.0369 25 6 10.4056 1.3655 0.5750 26 1 10.6010 0.3914 1.0234 27 6 6.0791 -1.5208 -0.0053 28 16 4.7232 -2.5465 0.0004 29 6 3.5906 -1.2020 0.0004 30 6 2.1923 -1.1920 0.0005 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5137 33 1 -0.3634 0.8900 0.5138 34 1 1.6541 2.1357 -0.0004 35 1 4.1018 2.1544 0.0009 36 1 8.3359 -0.3428 0.0008 37 1 11.4882 2.7033 -2.2742 38 1 10.3391 3.6812 -1.3099 39 1 14.2114 3.1324 2.7410 40 1 10.6474 3.3765 1.3767 41 1 11.9560 2.2412 1.8298 42 1 7.1003 -1.8727 -0.0104 43 1 1.6481 -2.1248 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960104766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:42 Heat of formation + Delta-G solvation = 53.886401 kcal Electronic energy + Delta-G solvation = -25701.196664 eV Core-core repulsion = 22031.655218 eV Total energy + Delta-G solvation = -3669.541446 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 342.114 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.48726 -40.48880 -39.51458 -36.64338 -36.04335 -34.38884 -32.57841 -32.05439 -31.53415 -28.85280 -27.81250 -27.44487 -25.93705 -23.75916 -23.42350 -22.44904 -22.00980 -20.88930 -20.72399 -19.01013 -18.86865 -18.22112 -17.62002 -16.78881 -16.50586 -16.35084 -16.14647 -15.56502 -15.52967 -15.18879 -14.91936 -14.82053 -14.65535 -14.57764 -13.86803 -13.81338 -13.62650 -13.26365 -13.12660 -13.09651 -13.01879 -12.76482 -12.74554 -12.51780 -12.10630 -12.02074 -11.98665 -11.75488 -11.68294 -11.66896 -11.11453 -10.96011 -10.70362 -10.66268 -9.80009 -9.48737 -8.98469 -8.70337 -7.77409 -5.24893 -0.53792 0.15087 0.39870 0.60179 0.80284 1.47757 1.48730 1.59125 1.86684 1.99942 2.48556 2.67102 2.87015 3.31704 3.47142 3.50611 3.70034 3.81990 3.86789 3.89820 3.95222 4.11914 4.19113 4.28125 4.33964 4.42503 4.51546 4.54964 4.59334 4.75161 4.85434 4.88370 4.90334 4.96221 5.00256 5.17232 5.25065 5.26638 5.35463 5.42575 5.44516 5.48143 5.58388 5.75712 5.90951 6.24012 6.40982 7.00938 7.08266 7.67728 8.42490 9.24477 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.028804 B = 0.001986 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.861103 B =14093.898560 C =14623.226952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.073 4.073 3 C -0.117 4.117 4 C -0.095 4.095 5 C -0.072 4.072 6 C -0.162 4.162 7 C 0.575 3.425 8 O -0.574 6.574 9 N -0.677 5.677 10 C 0.115 3.885 11 H 0.107 0.893 12 C -0.168 4.168 13 H 0.133 0.867 14 C 0.153 3.847 15 N -0.625 5.625 16 C -0.229 4.229 17 H 0.085 0.915 18 C -0.071 4.071 19 N -0.950 5.950 20 Si 0.985 3.015 21 H -0.267 1.267 22 H -0.294 1.294 23 H -0.290 1.290 24 C 0.153 3.847 25 C -0.171 4.171 26 H 0.122 0.878 27 C -0.178 4.178 28 S 0.240 5.760 29 C -0.177 4.177 30 C -0.087 4.087 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.146 0.854 35 H 0.119 0.881 36 H 0.415 0.585 37 H 0.063 0.937 38 H 0.022 0.978 39 H 0.249 0.751 40 H -0.004 1.004 41 H 0.110 0.890 42 H 0.201 0.799 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.498 -16.015 -4.562 31.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.076 4.076 3 C -0.136 4.136 4 C -0.115 4.115 5 C -0.079 4.079 6 C -0.181 4.181 7 C 0.363 3.637 8 O -0.455 6.455 9 N -0.327 5.327 10 C 0.008 3.992 11 H 0.125 0.875 12 C -0.190 4.190 13 H 0.150 0.850 14 C 0.027 3.973 15 N -0.350 5.350 16 C -0.358 4.358 17 H 0.103 0.897 18 C -0.263 4.263 19 N -0.600 5.600 20 Si 0.813 3.187 21 H -0.191 1.191 22 H -0.221 1.221 23 H -0.217 1.217 24 C 0.029 3.971 25 C -0.192 4.192 26 H 0.140 0.860 27 C -0.315 4.315 28 S 0.509 5.491 29 C -0.292 4.292 30 C -0.109 4.109 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.164 0.836 35 H 0.137 0.863 36 H 0.253 0.747 37 H 0.081 0.919 38 H 0.040 0.960 39 H 0.059 0.941 40 H 0.014 0.986 41 H 0.127 0.873 42 H 0.218 0.782 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -26.612 -16.762 -4.478 31.768 hybrid contribution 1.776 2.002 0.189 2.683 sum -24.836 -14.760 -4.289 29.207 Atomic orbital electron populations 1.20868 0.88043 1.04223 1.03597 1.20203 0.97943 0.91922 0.97522 1.21230 0.92927 0.99383 1.00094 1.21237 0.94792 0.96950 0.98496 1.18898 0.90675 0.94371 1.03950 1.19434 0.92509 0.93200 1.12921 1.17911 0.82156 0.88265 0.75379 1.90743 1.80335 1.22695 1.51683 1.45010 1.04172 1.09670 1.73818 1.21455 0.83281 0.91755 1.02680 0.87480 1.24321 0.99598 1.01335 0.93716 0.84951 1.21205 0.90067 0.93650 0.92330 1.46438 1.07069 1.78332 1.03115 1.19535 0.85380 1.36455 0.94409 0.89713 1.25623 1.02673 1.03002 0.94999 1.69741 1.35571 1.56197 0.98478 0.84908 0.79212 0.76892 0.77683 1.19098 1.22141 1.21658 1.22313 0.92361 0.91163 0.91283 1.24326 0.95803 1.01762 0.97325 0.86033 1.25471 1.07715 0.96665 1.01694 1.82698 0.90051 1.03661 1.72706 1.23061 0.99308 0.97093 1.09746 1.20650 0.89764 0.99550 1.00959 0.89780 0.89854 0.90444 0.83640 0.86312 0.74739 0.91876 0.96033 0.94112 0.98569 0.87273 0.78169 0.82666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 71.24 0.71 -0.16 16 2 C -0.07 -1.10 5.87 -19.91 -0.12 -1.22 16 3 C -0.12 -2.25 9.66 22.17 0.21 -2.04 16 4 C -0.09 -2.48 9.59 22.64 0.22 -2.26 16 5 C -0.07 -1.84 6.03 -20.27 -0.12 -1.96 16 6 C -0.16 -4.04 5.95 -19.90 -0.12 -4.15 16 7 C 0.58 17.76 7.77 86.49 0.67 18.43 16 8 O -0.57 -22.37 14.46 -4.29 -0.06 -22.43 16 9 N -0.68 -18.44 5.52 -446.36 -2.47 -20.91 16 10 C 0.12 3.96 5.97 44.99 0.27 4.23 16 11 H 0.11 4.32 7.40 -2.39 -0.02 4.30 16 12 C -0.17 -5.93 7.06 -9.88 -0.07 -6.00 16 13 H 0.13 3.91 8.14 -2.39 -0.02 3.89 16 14 C 0.15 6.53 7.05 86.53 0.61 7.14 16 15 N -0.62 -32.79 3.46 -678.17 -2.35 -35.14 16 16 C -0.23 -12.91 10.42 84.03 0.88 -12.03 16 17 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 18 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 19 N -0.95 -56.45 10.12 21.65 0.22 -56.23 16 20 Si 0.98 45.68 29.55 68.60 2.03 47.71 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 24 C 0.15 7.68 6.43 85.80 0.55 8.23 16 25 C -0.17 -6.54 6.96 -9.88 -0.07 -6.61 16 26 H 0.12 4.15 8.14 -2.39 -0.02 4.13 16 27 C -0.18 -2.98 10.20 66.84 0.68 -2.29 16 28 S 0.24 3.25 22.98 -56.49 -1.30 1.96 16 29 C -0.18 -3.43 6.47 22.94 0.15 -3.29 16 30 C -0.09 -1.34 9.71 22.48 0.22 -1.12 16 31 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.08 0.43 8.08 -2.39 -0.02 0.41 16 33 H 0.08 0.52 8.08 -2.39 -0.02 0.50 16 34 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.12 3.63 6.45 -2.91 -0.02 3.61 16 36 H 0.41 8.13 7.22 -92.70 -0.67 7.46 16 37 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 38 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 40 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.11 6.14 5.34 -2.39 -0.01 6.13 16 42 H 0.20 2.01 6.87 -2.91 -0.02 1.99 16 43 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -74.15 368.60 1.60 -72.55 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.39 Total: 21.15 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 5.14 Total: -8.66 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -4.59 Total: -112.28 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.06 Total: -22.43 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.30 Total: 1.96 kcal Total: -74.15 1.60 -72.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960104766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.441 kcal (2) G-P(sol) polarization free energy of solvation -74.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds