Wall clock time and date at job start Wed Apr 1 2020 00:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40421 * 122.20922 * 2 1 4 4 C 1.41564 * 128.85780 * 359.76674 * 3 2 1 5 5 C 1.35918 * 120.49644 * 180.02562 * 4 3 2 6 6 C 1.38973 * 120.69427 * 359.94490 * 5 4 3 7 7 C 1.37392 * 120.18763 * 0.02562 * 6 5 4 8 8 C 1.39899 * 120.17721 * 0.02562 * 7 6 5 9 9 S 1.75995 * 130.57652 * 180.02562 * 8 7 6 10 10 C 1.33676 * 122.21168 * 179.71083 * 2 1 3 11 11 C 1.47005 * 124.66168 * 0.26653 * 10 2 1 12 12 O 1.21652 * 119.99888 * 0.02562 * 11 10 2 13 13 N 1.34779 * 120.00172 * 179.97438 * 11 10 2 14 14 C 1.46500 * 119.99890 * 180.02562 * 13 11 10 15 15 H 1.08994 * 115.51880 * 9.58851 * 14 13 11 16 16 C 1.53002 * 117.43855 * 224.24253 * 14 13 11 17 17 H 1.09002 * 119.54263 * 4.12042 * 16 14 13 18 18 C 1.54390 * 118.12144 * 160.81019 * 16 14 13 19 19 N 1.48145 * 104.61875 * 87.19059 * 18 16 14 20 20 C 1.36934 * 127.84056 * 140.41751 * 19 18 16 21 21 H 1.08005 * 119.99922 * 195.62005 * 20 19 18 22 22 C 1.38807 * 120.00135 * 15.61134 * 20 19 18 23 23 N 1.31624 * 119.99877 * 9.11991 * 22 20 19 24 24 Si 1.86798 * 120.00499 * 189.10954 * 22 20 19 25 25 H 1.48503 * 109.46788 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47319 * 119.99957 * 24 22 20 27 27 H 1.48500 * 109.47521 * 240.00342 * 24 22 20 28 28 C 1.48152 * 104.32324 * 320.41274 * 19 18 16 29 29 C 1.53003 * 117.44041 * 155.00609 * 14 13 11 30 30 H 1.08993 * 119.53980 * 354.27981 * 29 14 13 31 31 H 1.08999 * 109.46826 * 90.00666 * 1 2 3 32 32 H 1.09007 * 109.46898 * 209.99805 * 1 2 3 33 33 H 1.08995 * 109.47320 * 329.99776 * 1 2 3 34 34 H 1.08001 * 119.75120 * 359.95973 * 4 3 2 35 35 H 1.07994 * 119.65661 * 179.97438 * 5 4 3 36 36 H 1.08006 * 119.90476 * 179.97438 * 6 5 4 37 37 H 1.07996 * 119.91316 * 179.97438 * 7 6 5 38 38 H 0.96999 * 119.99821 * 0.02562 * 13 11 10 39 39 H 1.09006 * 110.40547 * 328.40518 * 18 16 14 40 40 H 1.09001 * 110.51093 * 206.02296 * 18 16 14 41 41 H 0.96995 * 120.00161 * 180.02562 * 23 22 20 42 42 H 1.08995 * 110.41010 * 280.80625 * 28 19 18 43 43 H 1.09002 * 110.40580 * 158.36823 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2555 1.1881 0.0000 4 6 1.7962 2.5272 -0.0045 5 6 2.6802 3.5596 -0.0042 6 6 4.0493 3.3212 0.0016 7 6 4.5262 2.0328 0.0067 8 6 3.6361 0.9534 0.0054 9 16 3.9391 -0.7802 0.0114 10 6 2.2196 -1.1310 0.0057 11 6 1.6422 -2.4829 0.0069 12 8 0.4345 -2.6285 0.0021 13 7 2.4509 -3.5611 0.0123 14 6 1.8755 -4.9084 0.0130 15 1 0.7998 -4.9596 -0.1549 16 6 2.4895 -5.9368 0.9649 17 1 3.2769 -5.6293 1.6531 18 6 1.6560 -7.1864 1.3222 19 7 1.9669 -8.1618 0.2514 20 6 2.1576 -9.5122 0.3748 21 1 2.6210 -10.0676 -0.4273 22 6 1.7556 -10.1672 1.5307 23 7 1.0333 -9.5324 2.4295 24 14 2.2393 -11.9496 1.8107 25 1 3.0456 -12.4302 0.6599 26 1 3.0422 -12.0550 3.0554 27 1 1.0152 -12.7805 1.9393 28 6 2.0246 -7.3449 -0.9832 29 6 2.7325 -6.0414 -0.5550 30 1 3.6892 -5.8090 -1.0227 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 0.7354 2.7299 -0.0092 35 1 2.3148 4.5759 -0.0081 36 1 4.7404 4.1513 0.0014 37 1 5.5910 1.8526 0.0108 38 1 3.4139 -3.4450 0.0158 39 1 0.5925 -6.9469 1.3211 40 1 1.9551 -7.5801 2.2935 41 1 0.7527 -9.9900 3.2374 42 1 1.0188 -7.1302 -1.3442 43 1 2.6038 -7.8574 -1.7513 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960918521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:16 Heat of formation + Delta-G solvation = 72.662470 kcal Electronic energy + Delta-G solvation = -25781.534037 eV Core-core repulsion = 22112.806783 eV Total energy + Delta-G solvation = -3668.727254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 342.114 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.48175 -39.69589 -38.40508 -35.99270 -34.53907 -32.74079 -31.62803 -30.54506 -30.10088 -28.40364 -27.17014 -25.75369 -24.33663 -23.28164 -22.02312 -20.88108 -20.50657 -19.46647 -19.31092 -18.69490 -16.97881 -16.90079 -16.58249 -15.69799 -15.51386 -15.28495 -15.06046 -14.70975 -14.27889 -14.09409 -13.98366 -13.58825 -13.28216 -13.15490 -12.94811 -12.77351 -12.62503 -12.23987 -11.91151 -11.61320 -11.56480 -11.49247 -11.32840 -11.03727 -10.99729 -10.85500 -10.42889 -10.22530 -10.15329 -10.00859 -9.86170 -9.74269 -9.21922 -8.95139 -8.75528 -8.37656 -8.02797 -6.87876 -5.80331 -3.14952 -0.00724 0.82551 1.08022 1.53107 1.64182 2.95285 2.97428 3.31710 3.37770 3.43601 3.46229 4.23751 4.28013 4.37978 4.46238 4.48856 4.69885 4.81204 4.90559 5.09844 5.14244 5.22999 5.25629 5.33970 5.37352 5.49643 5.54752 5.58657 5.73205 5.80264 5.80890 5.87257 5.97594 6.04384 6.08245 6.19273 6.31776 6.42272 6.49561 6.66663 6.74589 6.86634 7.34542 7.43510 7.53305 7.71273 8.10743 8.19579 9.09990 9.72728 10.49430 11.34005 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.031000 B = 0.002038 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.013433 B =13734.013766 C =14138.728570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.006 4.006 3 C -0.083 4.083 4 C -0.066 4.066 5 C -0.124 4.124 6 C -0.093 4.093 7 C -0.088 4.088 8 C -0.126 4.126 9 S 0.116 5.884 10 C -0.228 4.228 11 C 0.591 3.409 12 O -0.518 6.518 13 N -0.690 5.690 14 C 0.095 3.905 15 H 0.135 0.865 16 C -0.177 4.177 17 H 0.102 0.898 18 C 0.185 3.815 19 N -0.593 5.593 20 C -0.227 4.227 21 H 0.078 0.922 22 C -0.006 4.006 23 N -0.914 5.914 24 Si 0.913 3.087 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.156 3.844 29 C -0.182 4.182 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.396 0.604 39 H 0.027 0.973 40 H 0.092 0.908 41 H 0.254 0.746 42 H 0.028 0.972 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.106 28.016 -5.198 29.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.020 4.020 3 C -0.091 4.091 4 C -0.085 4.085 5 C -0.144 4.144 6 C -0.114 4.114 7 C -0.111 4.111 8 C -0.242 4.242 9 S 0.384 5.616 10 C -0.347 4.347 11 C 0.377 3.623 12 O -0.396 6.396 13 N -0.338 5.338 14 C -0.010 4.010 15 H 0.153 0.847 16 C -0.199 4.199 17 H 0.120 0.880 18 C 0.059 3.941 19 N -0.316 5.316 20 C -0.355 4.355 21 H 0.096 0.904 22 C -0.203 4.203 23 N -0.560 5.560 24 Si 0.743 3.257 25 H -0.204 1.204 26 H -0.216 1.216 27 H -0.217 1.217 28 C 0.029 3.971 29 C -0.203 4.203 30 H 0.122 0.878 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.230 0.770 39 H 0.045 0.955 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.503 26.606 -5.042 27.850 hybrid contribution -0.171 0.134 0.208 0.301 sum 6.332 26.741 -4.834 27.902 Atomic orbital electron populations 1.20954 0.88344 1.04550 1.03487 1.19041 0.98129 0.89668 0.95118 1.18123 0.91467 0.94110 1.05402 1.20853 1.00288 0.90038 0.97368 1.20725 0.93263 0.99270 1.01169 1.21135 0.95819 0.96140 0.98352 1.20504 0.98724 0.90785 1.01062 1.22940 0.96846 0.97687 1.06742 1.84088 1.03036 0.97182 1.77295 1.23476 0.97082 0.97400 1.16723 1.16932 0.86389 0.82389 0.76638 1.90766 1.13480 1.85475 1.49852 1.45249 1.09247 1.05269 1.74043 1.21895 0.97876 0.76764 1.04467 0.84734 1.24757 1.03681 0.98846 0.92577 0.87954 1.21060 0.94382 0.83652 0.94991 1.45187 1.82438 1.03187 1.00803 1.19032 1.32728 0.81260 1.02479 0.90446 1.24918 0.98898 0.98278 0.98242 1.69908 1.39065 1.36198 1.10851 0.86033 0.77722 0.84138 0.77764 1.20358 1.21627 1.21663 1.21128 0.96608 0.88517 0.90854 1.24312 1.00802 0.96681 0.98550 0.87788 0.90300 0.87836 0.91651 0.85178 0.85236 0.85006 0.85263 0.76963 0.95485 0.89007 0.93547 0.95436 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 9.22 36.01 0.33 -0.92 16 2 C -0.01 -0.07 5.86 -105.40 -0.62 -0.68 16 3 C -0.08 -0.86 5.85 -107.13 -0.63 -1.49 16 4 C -0.07 -0.52 9.62 -39.15 -0.38 -0.90 16 5 C -0.12 -0.79 9.94 -40.14 -0.40 -1.19 16 6 C -0.09 -0.59 10.03 -39.62 -0.40 -0.98 16 7 C -0.09 -0.69 10.07 -39.27 -0.40 -1.08 16 8 C -0.13 -1.27 6.50 -38.28 -0.25 -1.52 16 9 S 0.12 1.20 22.26 -107.50 -2.39 -1.19 16 10 C -0.23 -2.93 6.32 -37.63 -0.24 -3.17 16 11 C 0.59 9.00 7.77 -12.71 -0.10 8.90 16 12 O -0.52 -9.24 13.46 5.23 0.07 -9.17 16 13 N -0.69 -10.05 5.56 -55.01 -0.31 -10.35 16 14 C 0.10 1.64 5.98 -67.93 -0.41 1.23 16 15 H 0.14 2.57 7.40 -51.93 -0.38 2.18 16 16 C -0.18 -3.41 7.06 -89.22 -0.63 -4.04 16 17 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 18 C 0.19 4.50 5.70 -2.41 -0.01 4.49 16 19 N -0.59 -15.23 3.38 -168.85 -0.57 -15.80 16 20 C -0.23 -6.32 10.35 -15.06 -0.16 -6.47 16 21 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 22 C -0.01 -0.17 5.40 -17.43 -0.09 -0.27 16 23 N -0.91 -26.88 10.86 55.49 0.60 -26.28 16 24 Si 0.91 21.94 29.56 -169.99 -5.03 16.92 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 C 0.16 3.27 7.04 -2.40 -0.02 3.26 16 29 C -0.18 -3.24 7.06 -89.22 -0.63 -3.87 16 30 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 1.37 5.72 -51.92 -0.30 1.07 16 33 H 0.06 0.55 7.35 -51.93 -0.38 0.17 16 34 H 0.13 0.78 7.42 -52.49 -0.39 0.40 16 35 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 36 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.40 4.88 7.87 -40.82 -0.32 4.56 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 2.48 6.51 -51.93 -0.34 2.14 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 367.62 15.07 5.54 5.54 Total: -1.00 -32.14 367.62 -12.56 -44.70 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -5.46 Total: 4.34 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -5.01 Total: -8.71 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.27 Total: -52.43 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.07 Total: -9.17 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.92 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.39 Total: -1.19 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.14 -12.56 -44.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960918521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.363 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds