Wall clock time and date at job start Wed Apr 1 2020 00:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99571 * 2 1 4 4 H 1.48505 * 109.46833 * 269.99254 * 3 2 1 5 5 H 1.48497 * 109.47738 * 29.99482 * 3 2 1 6 6 H 1.48504 * 109.46720 * 149.99829 * 3 2 1 7 7 C 1.38804 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99731 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00113 * 0.02562 * 7 2 1 10 10 C 1.47772 * 134.40524 * 180.02562 * 9 7 2 11 11 C 1.52940 * 85.80516 * 156.05644 * 10 9 7 12 12 C 1.47762 * 134.40749 * 359.96916 * 9 7 2 13 13 C 1.54008 * 115.15520 * 266.50276 * 11 10 9 14 14 C 1.55479 * 100.78262 * 194.49010 * 13 11 10 15 15 H 1.08992 * 110.99672 * 274.81439 * 14 13 11 16 16 N 1.46504 * 110.82614 * 151.33074 * 14 13 11 17 17 C 1.34775 * 120.00034 * 160.59691 * 16 14 13 18 18 O 1.21613 * 119.99861 * 359.97438 * 17 16 14 19 19 C 1.47375 * 119.99854 * 180.02562 * 17 16 14 20 20 C 1.36414 * 127.19599 * 359.97438 * 19 17 16 21 21 O 1.33648 * 108.39651 * 180.02562 * 20 19 17 22 22 C 1.34214 * 110.91281 * 359.72968 * 21 20 19 23 23 C 1.50696 * 125.44044 * 180.28854 * 22 21 20 24 24 F 1.39899 * 109.47255 * 120.18884 * 23 22 21 25 25 F 1.39903 * 109.46996 * 240.18698 * 23 22 21 26 26 C 1.34177 * 109.12202 * 0.45134 * 22 21 20 27 27 C 1.54463 * 102.37269 * 33.11374 * 14 13 11 28 28 O 1.42553 * 116.19102 * 141.02935 * 11 10 9 29 29 H 0.97002 * 120.00131 * 0.02562 * 1 2 3 30 30 H 1.08999 * 113.82394 * 41.83896 * 10 9 7 31 31 H 1.08997 * 113.92509 * 270.28667 * 10 9 7 32 32 H 1.08996 * 113.82104 * 89.72339 * 12 9 7 33 33 H 1.08997 * 113.82574 * 318.15862 * 12 9 7 34 34 H 1.08994 * 111.15716 * 76.60381 * 13 11 10 35 35 H 1.09004 * 111.15271 * 312.36909 * 13 11 10 36 36 H 0.97004 * 119.99867 * 340.60033 * 16 14 13 37 37 H 1.08002 * 125.80125 * 359.97438 * 20 19 17 38 38 H 1.09003 * 109.47201 * 0.18863 * 23 22 21 39 39 H 1.08002 * 127.02647 * 179.84063 * 26 22 21 40 40 H 1.09003 * 109.83643 * 98.13551 * 27 14 13 41 41 H 1.08998 * 109.83795 * 219.03388 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.7228 -3.8113 0.0015 11 6 0.3496 -4.0781 0.6196 12 6 -0.1056 -2.7557 0.0006 13 6 0.3220 -4.1231 2.1587 14 6 -1.0691 -4.7721 2.4059 15 1 -1.8573 -4.0193 2.4029 16 7 -1.0765 -5.5258 3.6621 17 6 -2.2461 -5.8307 4.2582 18 8 -3.2955 -5.4798 3.7535 19 6 -2.2535 -6.5885 5.5222 20 6 -1.1718 -7.0515 6.2124 21 8 -1.6084 -7.6870 7.3041 22 6 -2.9486 -7.6595 7.3705 23 6 -3.7819 -8.2709 8.4672 24 9 -4.5427 -7.2732 9.0862 25 9 -4.6346 -9.2366 7.9218 26 6 -3.4283 -7.0038 6.3026 27 6 -1.2114 -5.7210 1.1954 28 8 -0.3267 -5.2491 0.1685 29 1 -0.4850 0.8400 -0.0004 30 1 2.5562 -4.0354 0.6673 31 1 1.8472 -4.2362 -0.9945 32 1 -0.5332 -2.8605 -0.9964 33 1 -0.7168 -2.1458 0.6658 34 1 0.3690 -3.1200 2.5825 35 1 1.1236 -4.7506 2.5483 36 1 -0.2394 -5.8053 4.0649 37 1 -0.1382 -6.9266 5.9251 38 1 -3.1275 -8.7380 9.2033 39 1 -4.4653 -6.8155 6.0669 40 1 -0.9341 -6.7345 1.4853 41 1 -2.2397 -5.7080 0.8341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053906504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:51 Heat of formation + Delta-G solvation = -119.670702 kcal Electronic energy + Delta-G solvation = -29064.942202 eV Core-core repulsion = 24390.892355 eV Total energy + Delta-G solvation = -4674.049847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.122 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.14832 -48.16938 -43.78928 -41.65558 -40.32962 -37.91218 -35.85139 -34.22179 -34.14029 -32.64546 -31.26394 -29.85589 -27.53818 -27.07012 -26.72653 -25.26235 -23.90133 -22.54719 -22.39977 -21.36713 -20.34538 -19.76634 -18.76424 -18.53215 -18.31345 -17.87852 -17.32522 -17.28966 -17.15100 -17.02979 -16.55559 -16.42968 -15.74965 -15.71711 -15.56546 -15.03333 -14.75227 -14.52661 -14.44262 -14.36126 -14.25308 -14.06588 -13.85446 -13.70214 -13.38277 -12.89034 -12.83232 -12.70272 -12.61804 -12.37817 -12.35605 -12.00011 -11.77653 -11.50266 -11.33018 -11.11798 -10.87749 -10.38272 -10.31308 -10.06143 -8.98417 -7.91856 -5.27278 0.14196 0.57145 1.24072 1.46372 1.48637 1.57326 1.83052 2.14395 2.43602 2.81153 2.88778 3.06035 3.18678 3.32881 3.38099 3.53373 3.61833 3.69178 3.74848 3.80492 3.84683 3.99807 4.03319 4.18786 4.34549 4.63606 4.68006 4.70392 4.75701 4.81292 4.85741 4.92127 4.94047 5.02719 5.13980 5.20760 5.32255 5.48713 5.62896 5.85880 6.15395 6.40955 6.87717 7.07801 7.57940 8.51163 9.25138 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.020237 B = 0.002076 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.277810 B =13482.829040 C =14046.281979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.069 4.069 3 Si 0.981 3.019 4 H -0.290 1.290 5 H -0.297 1.297 6 H -0.261 1.261 7 C -0.230 4.230 8 H 0.093 0.907 9 N -0.629 5.629 10 C 0.132 3.868 11 C 0.077 3.923 12 C 0.148 3.852 13 C -0.107 4.107 14 C 0.125 3.875 15 H 0.076 0.924 16 N -0.692 5.692 17 C 0.587 3.413 18 O -0.581 6.581 19 C -0.269 4.269 20 C 0.091 3.909 21 O -0.148 6.148 22 C -0.105 4.105 23 C 0.361 3.639 24 F -0.196 7.196 25 F -0.196 7.196 26 C -0.127 4.127 27 C 0.045 3.955 28 O -0.378 6.378 29 H 0.248 0.752 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.006 0.994 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.422 0.578 37 H 0.273 0.727 38 H 0.182 0.818 39 H 0.152 0.848 40 H 0.096 0.904 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.109 -21.338 20.179 29.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.809 3.191 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.185 1.185 7 C -0.357 4.357 8 H 0.110 0.890 9 N -0.358 5.358 10 C 0.007 3.993 11 C 0.036 3.964 12 C 0.022 3.978 13 C -0.145 4.145 14 C 0.019 3.981 15 H 0.095 0.905 16 N -0.346 5.346 17 C 0.376 3.624 18 O -0.461 6.461 19 C -0.273 4.273 20 C 0.020 3.980 21 O -0.042 6.042 22 C -0.154 4.154 23 C 0.308 3.692 24 F -0.178 7.178 25 F -0.177 7.177 26 C -0.147 4.147 27 C -0.033 4.033 28 O -0.296 6.296 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.024 0.976 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.261 0.739 37 H 0.289 0.711 38 H 0.199 0.801 39 H 0.170 0.830 40 H 0.114 0.886 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.651 -21.021 19.864 28.929 hybrid contribution -0.338 1.582 -0.769 1.792 sum -0.990 -19.439 19.095 27.267 Atomic orbital electron populations 1.70037 1.06673 1.25675 1.58038 1.25694 0.96508 1.01123 1.02855 0.85037 0.77870 0.78813 0.77356 1.21683 1.22321 1.18534 1.19418 0.90977 0.82595 1.42758 0.88953 1.46048 1.02905 1.00664 1.86160 1.22689 0.94640 0.83380 0.98599 1.23721 0.93922 0.84500 0.94273 1.22455 0.87803 0.91220 0.96345 1.22864 0.96069 1.02618 0.92921 1.22268 0.98704 0.93267 0.83826 0.90539 1.45449 1.08801 1.56543 1.23780 1.17564 0.83507 0.78142 0.83164 1.90818 1.33348 1.55368 1.66604 1.21335 0.94882 1.11430 0.99686 1.25536 1.00550 0.89437 0.82500 1.83726 1.20289 1.59909 1.40257 1.22608 0.82538 1.09075 1.01212 1.19554 0.83262 0.77641 0.88744 1.93061 1.78386 1.63633 1.82676 1.93061 1.73468 1.63245 1.87895 1.22761 1.00184 0.98153 0.93580 1.23592 0.94031 0.98374 0.87315 1.88302 1.57927 1.42988 1.40363 0.94323 0.90022 0.93812 0.97624 0.93522 0.90252 0.85937 0.73936 0.71125 0.80129 0.83048 0.88603 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.27 11.40 21.65 0.25 -58.03 16 2 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 3 Si 0.98 45.21 29.55 68.60 2.03 47.24 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 5 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.23 -12.58 10.70 84.03 0.90 -11.68 16 8 H 0.09 4.73 7.83 -2.91 -0.02 4.70 16 9 N -0.63 -31.93 3.69 -739.83 -2.73 -34.66 16 10 C 0.13 5.16 8.49 86.11 0.73 5.89 16 11 C 0.08 2.85 1.48 -10.44 -0.02 2.83 16 12 C 0.15 7.34 6.98 86.11 0.60 7.94 16 13 C -0.11 -3.05 6.02 31.79 0.19 -2.86 16 14 C 0.13 3.44 3.29 46.34 0.15 3.59 16 15 H 0.08 2.64 7.71 -2.39 -0.02 2.63 16 16 N -0.69 -13.27 5.13 -439.46 -2.25 -15.52 16 17 C 0.59 14.41 7.81 86.65 0.68 15.08 16 18 O -0.58 -20.52 16.72 -4.07 -0.07 -20.59 16 19 C -0.27 -4.84 6.31 -18.99 -0.12 -4.96 16 20 C 0.09 0.76 11.61 67.39 0.78 1.54 16 21 O -0.15 -1.50 10.52 4.52 0.05 -1.45 16 22 C -0.11 -1.46 6.71 24.76 0.17 -1.30 16 23 C 0.36 3.59 5.75 71.23 0.41 4.00 16 24 F -0.20 -2.88 17.32 44.97 0.78 -2.11 16 25 F -0.20 -2.78 17.32 44.97 0.78 -2.00 16 26 C -0.13 -2.49 10.90 23.65 0.26 -2.23 16 27 C 0.04 1.27 7.57 72.48 0.55 1.82 16 28 O -0.38 -13.27 11.17 -148.98 -1.66 -14.94 16 29 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.08 2.69 8.11 -2.39 -0.02 2.68 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.05 2.56 7.16 -2.39 -0.02 2.54 16 34 H 0.08 2.69 8.05 -2.39 -0.02 2.67 16 35 H 0.12 2.43 7.98 -2.38 -0.02 2.41 16 36 H 0.42 3.97 7.47 -92.71 -0.69 3.28 16 37 H 0.27 -0.84 7.47 -2.91 -0.02 -0.86 16 38 H 0.18 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 40 H 0.10 2.18 8.02 -2.39 -0.02 2.16 16 41 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -81.77 362.01 3.31 -78.46 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.40 Total: 7.35 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: 5.75 Total: 16.24 kcal Atomic # 7 Polarization: -103.47 SS G_CDS: -4.74 Total: -108.21 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -1.68 Total: -36.98 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 1.56 Total: -4.11 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -81.77 3.31 -78.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053906504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.212 kcal (2) G-P(sol) polarization free energy of solvation -81.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds