Wall clock time and date at job start Wed Apr 1 2020 00:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 120.00151 * 2 1 4 4 H 1.48499 * 109.47330 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47645 * 300.00949 * 3 2 1 6 6 H 1.48505 * 109.47008 * 60.00735 * 3 2 1 7 7 C 1.38801 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00037 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00003 * 359.97438 * 7 2 1 10 10 C 1.80997 * 99.99908 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47088 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99834 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00178 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99782 * 0.02562 * 13 11 10 15 15 C 1.52998 * 109.46804 * 269.99447 * 14 13 11 16 16 O 1.42906 * 109.47535 * 65.00369 * 15 14 13 17 17 C 1.46496 * 120.00360 * 180.02562 * 13 11 10 18 18 C 1.52997 * 109.46953 * 90.00228 * 17 13 11 19 19 N 1.46506 * 109.47289 * 180.02562 * 18 17 13 20 20 C 1.34774 * 120.00072 * 180.02562 * 19 18 17 21 21 O 1.21600 * 120.00136 * 359.97438 * 20 19 18 22 22 C 1.47406 * 119.99861 * 179.97438 * 20 19 18 23 23 N 1.31620 * 125.86423 * 359.69433 * 22 20 19 24 24 C 1.33100 * 109.09345 * 179.83188 * 23 22 20 25 25 C 1.35558 * 108.35165 * 0.42803 * 24 23 22 26 26 N 1.35407 * 107.16268 * 359.74376 * 25 24 23 27 27 H 0.96995 * 126.44150 * 179.97438 * 26 25 24 28 28 H 0.97002 * 119.99466 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47220 * 60.00565 * 10 9 7 30 30 H 1.08994 * 109.47559 * 300.00007 * 10 9 7 31 31 H 1.08994 * 109.47320 * 29.99309 * 14 13 11 32 32 H 1.09000 * 109.47211 * 149.99834 * 14 13 11 33 33 H 1.09009 * 109.47169 * 184.99878 * 15 14 13 34 34 H 1.08999 * 109.47772 * 304.99940 * 15 14 13 35 35 H 0.96693 * 114.00449 * 180.02562 * 16 15 14 36 36 H 1.09001 * 109.47062 * 330.00723 * 17 13 11 37 37 H 1.08996 * 109.47565 * 210.00188 * 17 13 11 38 38 H 1.09001 * 109.47289 * 60.00079 * 18 17 13 39 39 H 1.09004 * 109.47261 * 300.00335 * 18 17 13 40 40 H 0.97001 * 119.99251 * 0.02562 * 19 18 17 41 41 H 1.08003 * 125.81919 * 180.21000 * 24 23 22 42 42 H 1.08001 * 126.41841 * 179.77292 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3966 -1.2123 6 1 1.8917 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8440 -6.3432 -0.0003 14 6 4.2890 -6.1021 -0.0008 15 6 4.7915 -6.0182 -1.4435 16 8 4.2175 -4.8759 -2.0822 17 6 2.3302 -7.7151 -0.0003 18 6 2.1510 -8.1925 -1.4427 19 7 1.6366 -9.5644 -1.4428 20 6 1.4004 -10.1954 -2.6100 21 8 1.6136 -9.6261 -3.6631 22 6 0.8834 -11.5759 -2.6099 23 7 0.6183 -12.3000 -1.5433 24 6 0.1660 -13.4914 -1.9273 25 6 0.1529 -13.5265 -3.2824 26 7 0.6026 -12.3257 -3.7175 27 1 0.7064 -12.0498 -4.6416 28 1 -0.4849 0.8401 0.0004 29 1 3.1243 -3.7314 0.8895 30 1 3.1244 -3.7314 -0.8904 31 1 4.5011 -5.1645 0.5129 32 1 4.7940 -6.9202 0.5128 33 1 5.8778 -5.9278 -1.4452 34 1 4.5011 -6.9200 -1.9825 35 1 4.4924 -4.7600 -3.0020 36 1 1.3695 -7.7433 0.5138 37 1 3.0364 -8.3675 0.5132 38 1 3.1117 -8.1643 -1.9569 39 1 1.4448 -7.5401 -1.9563 40 1 1.4662 -10.0183 -0.6027 41 1 -0.1354 -14.2946 -1.2711 42 1 -0.1584 -14.3565 -3.8993 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001057026957.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:44 Heat of formation + Delta-G solvation = -51.942070 kcal Electronic energy + Delta-G solvation = -26816.606939 eV Core-core repulsion = 22731.627163 eV Total energy + Delta-G solvation = -4084.979776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.61677 -39.94636 -39.31019 -37.01225 -35.83884 -34.57769 -33.09582 -32.33779 -31.15038 -29.92142 -29.28503 -27.64209 -25.40789 -24.28061 -23.04932 -22.49890 -21.98825 -20.84555 -19.53409 -18.86964 -17.73036 -17.64908 -16.82995 -16.58248 -16.39917 -16.07811 -15.58362 -15.26747 -14.95356 -14.72659 -14.41813 -14.41542 -14.27956 -13.95597 -13.88924 -13.67094 -13.29454 -12.99908 -12.63620 -12.46980 -12.23354 -11.76820 -11.46040 -11.26796 -11.00006 -10.92006 -10.77474 -10.71714 -10.69854 -10.65622 -10.06260 -9.68631 -9.42154 -9.28236 -8.99824 -8.98489 -8.65297 -8.07955 -6.36889 -6.12861 -3.81049 0.96762 2.13114 2.20536 2.84266 3.07015 3.15997 3.24792 3.26627 3.33289 3.37377 3.72923 3.96070 4.14876 4.29627 4.53045 4.67657 4.74239 4.80510 4.91705 4.92943 5.02662 5.14809 5.21620 5.22468 5.30658 5.40088 5.48373 5.59509 5.74957 5.83938 5.86623 6.02264 6.11389 6.14539 6.61326 6.65055 6.65731 7.03015 7.40673 7.52286 7.65197 7.69229 7.79868 8.45181 8.63332 9.32547 10.94750 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.021201 B = 0.002125 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.400908 B =13172.056772 C =13633.035575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.527 4.527 8 H 0.072 0.928 9 S -0.071 6.071 10 C -0.153 4.153 11 C 0.544 3.456 12 O -0.516 6.516 13 N -0.615 5.615 14 C 0.110 3.890 15 C 0.052 3.948 16 O -0.557 6.557 17 C 0.107 3.893 18 C 0.103 3.897 19 N -0.699 5.699 20 C 0.606 3.394 21 O -0.539 6.539 22 C 0.146 3.854 23 N -0.443 5.443 24 C -0.028 4.028 25 C -0.024 4.024 26 N -0.524 5.524 27 H 0.431 0.569 28 H 0.266 0.734 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.377 0.623 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.413 0.587 41 H 0.180 0.820 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.100 -27.616 -4.852 29.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.675 4.675 8 H 0.090 0.910 9 S 0.156 5.844 10 C -0.303 4.303 11 C 0.333 3.667 12 O -0.390 6.390 13 N -0.351 5.351 14 C -0.014 4.014 15 C -0.027 4.027 16 O -0.363 6.363 17 C -0.017 4.017 18 C -0.021 4.021 19 N -0.351 5.351 20 C 0.390 3.610 21 O -0.415 6.415 22 C -0.116 4.116 23 N -0.166 5.166 24 C -0.181 4.181 25 C -0.163 4.163 26 N -0.126 5.126 27 H 0.271 0.729 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.140 0.860 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.225 0.775 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.249 0.751 41 H 0.197 0.803 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 7.166 -26.953 -4.169 28.199 hybrid contribution 2.124 0.559 -1.517 2.669 sum 9.289 -26.394 -5.686 28.553 Atomic orbital electron populations 1.70043 1.05910 1.27116 1.47402 1.24991 0.95013 0.98954 0.94820 0.86135 0.79605 0.82061 0.77784 1.19653 1.20677 1.20688 1.22885 0.94879 0.91599 1.58146 0.90962 1.85302 1.05764 0.96632 1.96736 1.23729 1.06276 0.94362 1.05923 1.20426 0.85932 0.86394 0.73910 1.90696 1.15281 1.85342 1.47699 1.47770 1.06297 1.04899 1.76137 1.21714 0.80628 1.03582 0.95496 1.22762 0.96464 0.89073 0.94380 1.86599 1.72918 1.46533 1.30222 1.21460 1.01930 0.83334 0.95009 1.22004 1.00152 0.81095 0.98846 1.45481 1.65520 1.15614 1.08473 1.16411 0.77805 0.82326 0.84483 1.90871 1.53039 1.66495 1.31101 1.22654 1.10315 0.96009 0.82599 1.70212 1.14097 1.04330 1.27921 1.22533 1.06270 0.96439 0.92820 1.23034 1.05886 0.89942 0.97480 1.42964 1.47012 1.12063 1.10573 0.72942 0.92401 0.90095 0.86021 0.88871 0.89078 0.92893 0.93471 0.77481 0.88843 0.90075 0.90990 0.90101 0.75104 0.80295 0.79535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.80 13.22 55.49 0.73 -26.06 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.89 29.55 -169.99 -5.02 16.86 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -15.41 9.50 30.94 0.29 -15.12 16 8 H 0.07 2.02 7.80 -52.48 -0.41 1.61 16 9 S -0.07 -2.00 20.57 -107.50 -2.21 -4.22 16 10 C -0.15 -3.27 4.64 36.01 0.17 -3.10 16 11 C 0.54 10.60 7.39 -10.98 -0.08 10.52 16 12 O -0.52 -12.02 15.44 5.55 0.09 -11.93 16 13 N -0.61 -8.42 2.46 -173.69 -0.43 -8.85 16 14 C 0.11 1.12 5.82 -4.04 -0.02 1.10 16 15 C 0.05 0.50 7.39 37.16 0.27 0.77 16 16 O -0.56 -7.06 10.38 -35.23 -0.37 -7.43 16 17 C 0.11 1.19 5.56 -4.05 -0.02 1.17 16 18 C 0.10 1.22 5.97 -4.04 -0.02 1.20 16 19 N -0.70 -7.48 5.55 -61.39 -0.34 -7.82 16 20 C 0.61 7.42 7.81 -12.53 -0.10 7.32 16 21 O -0.54 -8.08 17.09 5.28 0.09 -7.99 16 22 C 0.15 1.53 7.95 -154.52 -1.23 0.30 16 23 N -0.44 -4.51 10.90 -11.26 -0.12 -4.63 16 24 C -0.03 -0.20 11.85 -17.96 -0.21 -0.41 16 25 C -0.02 -0.13 12.00 -16.93 -0.20 -0.34 16 26 N -0.52 -3.94 6.14 -10.78 -0.07 -4.00 16 27 H 0.43 2.43 8.96 -40.82 -0.37 2.07 16 28 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.08 1.62 7.40 -51.92 -0.38 1.23 16 30 H 0.12 2.54 5.12 -51.92 -0.27 2.27 16 31 H 0.09 1.04 6.44 -51.93 -0.33 0.71 16 32 H 0.09 0.61 7.89 -51.93 -0.41 0.20 16 33 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 34 H 0.05 0.43 6.11 -51.93 -0.32 0.11 16 35 H 0.38 3.34 9.12 45.56 0.42 3.75 16 36 H 0.09 1.19 7.42 -51.93 -0.39 0.80 16 37 H 0.08 0.61 7.89 -51.93 -0.41 0.20 16 38 H 0.07 0.81 6.14 -51.93 -0.32 0.49 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.41 3.69 8.15 -40.82 -0.33 3.36 16 41 H 0.18 0.80 8.06 -52.48 -0.42 0.37 16 42 H 0.19 0.27 8.06 -52.49 -0.42 -0.15 16 LS Contribution 373.19 15.07 5.62 5.62 Total: -1.00 -40.61 373.19 -7.62 -48.23 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -4.34 Total: 6.83 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -1.25 Total: 5.38 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.22 Total: -51.37 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.19 Total: -27.35 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: -2.00 SS G_CDS: -2.21 Total: -4.22 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -40.61 -7.62 -48.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001057026957.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.709 kcal (2) G-P(sol) polarization free energy of solvation -40.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds