Wall clock time and date at job start Wed Apr 1 2020 00:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86806 * 119.99821 * 2 1 4 4 H 1.48493 * 109.46919 * 240.00145 * 3 2 1 5 5 H 1.48500 * 109.46994 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46863 * 120.00050 * 3 2 1 7 7 C 1.38794 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00328 * 180.02562 * 7 2 1 9 9 S 1.76207 * 119.99667 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99759 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46831 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99899 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00297 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47246 * 180.02562 * 14 13 11 16 16 N 1.46510 * 109.47133 * 179.97438 * 15 14 13 17 17 C 1.46502 * 119.99754 * 269.99954 * 16 15 14 18 18 C 1.53000 * 109.47085 * 264.63353 * 17 16 15 19 19 O 1.42908 * 109.46724 * 65.00275 * 18 17 16 20 20 C 1.34775 * 120.00017 * 89.99657 * 16 15 14 21 21 O 1.21602 * 119.99916 * 3.84249 * 20 16 15 22 22 C 1.47426 * 120.00164 * 183.84400 * 20 16 15 23 23 C 1.41293 * 126.41075 * 345.19065 * 22 20 16 24 24 N 1.30450 * 108.02118 * 179.70568 * 23 22 20 25 25 N 1.39940 * 108.89563 * 0.41159 * 24 23 22 26 26 H 0.96997 * 125.75587 * 179.84416 * 25 24 23 27 27 C 1.34260 * 108.48889 * 359.58365 * 25 24 23 28 28 H 0.97003 * 120.00072 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.46606 * 60.00122 * 10 9 7 30 30 H 1.08998 * 109.47554 * 300.00227 * 10 9 7 31 31 H 0.97008 * 119.99860 * 0.02562 * 13 11 10 32 32 H 1.08996 * 109.47257 * 59.99669 * 14 13 11 33 33 H 1.09007 * 109.47095 * 300.00268 * 14 13 11 34 34 H 1.09000 * 109.47546 * 59.99991 * 15 14 13 35 35 H 1.08998 * 109.47261 * 299.99386 * 15 14 13 36 36 H 1.08993 * 109.47410 * 24.63959 * 17 16 15 37 37 H 1.09002 * 109.46949 * 144.64161 * 17 16 15 38 38 H 1.08995 * 109.47320 * 185.00430 * 18 17 16 39 39 H 1.09005 * 109.47317 * 305.00794 * 18 17 16 40 40 H 0.96702 * 113.99324 * 180.02562 * 19 18 17 41 41 H 1.07995 * 125.99199 * 0.02562 * 23 22 20 42 42 H 1.07999 * 126.28860 * 180.21903 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9873 -5.3027 -0.0017 12 8 0.7911 -5.5022 -0.0009 13 7 2.8441 -6.3431 -0.0033 14 6 2.3304 -7.7150 -0.0034 15 6 3.5025 -8.6984 -0.0046 16 7 2.9887 -10.0705 -0.0042 17 6 2.7332 -10.7565 1.2648 18 6 3.9481 -11.6083 1.6378 19 8 5.0683 -10.7567 1.8872 20 6 2.7512 -10.7015 -1.1712 21 8 3.0286 -10.1587 -2.2233 22 6 2.1549 -12.0498 -1.1721 23 6 2.0484 -12.9205 -0.0644 24 7 1.4579 -14.0126 -0.4649 25 7 1.1712 -13.8984 -1.8298 26 1 0.7355 -14.5715 -2.3757 27 6 1.5956 -12.6977 -2.2550 28 1 -0.4850 0.8401 0.0004 29 1 3.1251 -3.7316 0.8875 30 1 3.1238 -3.7309 -0.8925 31 1 3.8010 -6.1834 -0.0043 32 1 1.7208 -7.8746 -0.8927 33 1 1.7228 -7.8756 0.8872 34 1 4.1118 -8.5387 0.8849 35 1 4.1104 -8.5381 -0.8950 36 1 2.5527 -10.0189 2.0467 37 1 1.8579 -11.3978 1.1613 38 1 3.7249 -12.1870 2.5340 39 1 4.1827 -12.2860 0.8168 40 1 5.8760 -11.2302 2.1294 41 1 2.3908 -12.7156 0.9391 42 1 1.5146 -12.3102 -3.2599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001057073316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:23 Heat of formation + Delta-G solvation = -18.759118 kcal Electronic energy + Delta-G solvation = -26547.280172 eV Core-core repulsion = 22463.739317 eV Total energy + Delta-G solvation = -4083.540855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.02040 -39.92385 -38.94762 -37.63519 -35.87058 -34.51519 -32.56413 -32.38549 -31.16483 -30.35952 -29.53169 -27.71591 -25.44935 -24.25576 -23.50517 -22.55581 -21.88746 -20.38512 -19.81101 -18.59571 -17.96855 -17.79053 -16.86444 -16.54631 -16.25692 -15.83122 -15.55705 -15.32280 -15.24867 -14.85629 -14.76272 -14.54152 -14.11316 -13.90278 -13.82764 -13.45256 -13.36459 -13.08855 -12.51375 -12.44916 -12.12659 -12.04307 -11.84052 -11.68338 -11.24297 -11.00268 -11.00146 -10.73675 -10.59532 -10.33711 -10.13319 -9.78590 -9.38674 -9.34754 -9.02196 -8.96141 -8.81156 -8.18777 -6.45080 -6.17274 -3.87549 1.07356 1.63951 2.17084 2.52573 3.04453 3.15943 3.18017 3.26900 3.31100 3.38309 3.65726 3.86904 4.04399 4.24735 4.27512 4.41937 4.51213 4.65285 4.77581 4.81589 4.86862 4.90849 5.00513 5.11819 5.17617 5.23882 5.32887 5.42082 5.69511 5.72072 5.84136 5.94421 5.96982 6.20158 6.23190 6.54000 6.68716 6.91496 7.05161 7.16457 7.63552 7.77588 7.94523 8.39414 8.68910 9.27775 10.90090 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.022831 B = 0.001875 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.111932 B =14929.813259 C =15558.742452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.735 5.735 14 C 0.107 3.893 15 C 0.112 3.888 16 N -0.595 5.595 17 C 0.087 3.913 18 C 0.046 3.954 19 O -0.563 6.563 20 C 0.594 3.406 21 O -0.539 6.539 22 C -0.292 4.292 23 C 0.055 3.945 24 N -0.293 5.293 25 N -0.462 5.462 26 H 0.446 0.554 27 C 0.137 3.863 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.399 0.601 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.381 0.619 41 H 0.207 0.793 42 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.252 -31.894 1.503 33.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.319 3.681 12 O -0.392 6.392 13 N -0.391 5.391 14 C -0.018 4.018 15 C -0.011 4.011 16 N -0.327 5.327 17 C -0.037 4.037 18 C -0.033 4.033 19 O -0.368 6.368 20 C 0.383 3.617 21 O -0.416 6.416 22 C -0.307 4.307 23 C -0.133 4.133 24 N -0.114 5.114 25 N -0.167 5.167 26 H 0.291 0.709 27 C -0.016 4.016 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.233 0.767 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.127 0.873 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.228 0.772 41 H 0.223 0.777 42 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 6.351 -32.520 1.161 33.154 hybrid contribution 2.851 1.261 -0.315 3.134 sum 9.203 -31.259 0.846 32.596 Atomic orbital electron populations 1.70012 1.05945 1.27510 1.46881 1.24994 0.95032 0.99014 0.94589 0.86222 0.79221 0.81249 0.78790 1.19940 1.20852 1.19955 1.22835 0.94897 0.91680 1.58914 0.90952 1.85396 1.05027 0.96288 1.96718 1.23527 1.06518 0.95285 1.04992 1.20292 0.86486 0.86219 0.75120 1.90699 1.15407 1.85588 1.47523 1.45823 1.10014 1.05215 1.78008 1.21583 0.96591 0.81052 1.02598 1.21582 0.95500 0.79445 1.04597 1.47362 1.65803 1.14237 1.05286 1.22265 0.96586 0.98096 0.86728 1.22913 0.87905 0.92932 0.99579 1.86516 1.21416 1.36709 1.92200 1.17283 0.77259 0.83851 0.83318 1.90812 1.52427 1.67578 1.30777 1.20273 1.17340 0.98719 0.94359 1.25143 0.97139 0.90633 1.00345 1.77205 1.20821 1.23006 0.90413 1.46278 1.47163 1.14682 1.08617 0.70931 1.23098 0.93090 0.85380 0.99999 0.92169 0.89164 0.89138 0.76749 0.91428 0.91700 0.88950 0.89140 0.88535 0.87336 0.92070 0.92733 0.77215 0.77680 0.78946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.53 13.22 55.49 0.73 -25.79 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.53 -15.47 9.50 30.94 0.29 -15.18 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.17 6.16 36.01 0.22 -2.94 16 11 C 0.53 10.42 7.85 -10.98 -0.09 10.33 16 12 O -0.52 -12.31 15.86 5.56 0.09 -12.22 16 13 N -0.74 -10.48 5.56 -60.30 -0.33 -10.82 16 14 C 0.11 1.40 6.00 -4.05 -0.02 1.38 16 15 C 0.11 1.13 5.45 -4.04 -0.02 1.11 16 16 N -0.59 -5.50 2.43 -174.95 -0.43 -5.93 16 17 C 0.09 0.52 5.28 -4.04 -0.02 0.50 16 18 C 0.05 0.20 5.74 37.16 0.21 0.42 16 19 O -0.56 -3.30 13.09 -35.23 -0.46 -3.76 16 20 C 0.59 6.56 7.62 -12.52 -0.10 6.46 16 21 O -0.54 -7.89 16.49 5.28 0.09 -7.81 16 22 C -0.29 -2.48 5.92 -105.07 -0.62 -3.10 16 23 C 0.05 0.37 8.68 -16.98 -0.15 0.22 16 24 N -0.29 -2.20 12.63 30.86 0.39 -1.81 16 25 N -0.46 -2.46 7.29 30.85 0.22 -2.24 16 26 H 0.45 0.85 8.96 -182.72 -1.64 -0.79 16 27 C 0.14 0.90 11.85 -16.56 -0.20 0.70 16 28 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 30 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 31 H 0.40 4.40 8.47 -40.82 -0.35 4.05 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.82 7.63 -51.93 -0.40 0.42 16 35 H 0.09 1.02 7.37 -51.93 -0.38 0.63 16 36 H 0.10 0.57 8.03 -51.93 -0.42 0.15 16 37 H 0.11 0.52 4.66 -51.93 -0.24 0.28 16 38 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 39 H 0.05 0.26 6.68 -51.93 -0.35 -0.09 16 40 H 0.38 0.75 9.12 45.56 0.42 1.16 16 41 H 0.21 0.87 3.40 -52.49 -0.18 0.69 16 42 H 0.19 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -41.34 372.77 -7.51 -48.85 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.61 Total: 1.25 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -0.58 Total: 1.91 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.59 Total: -46.59 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.29 Total: -23.78 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -41.34 -7.51 -48.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001057073316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.087 kcal (2) G-P(sol) polarization free energy of solvation -41.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds