Wall clock time and date at job start Wed Apr 1 2020 01:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30650 * 128.63907 * 2 1 4 4 O 1.20840 * 109.61624 * 180.02562 * 3 2 1 5 5 N 1.20894 * 115.91102 * 359.73494 * 4 3 2 6 6 C 1.31599 * 109.18052 * 0.42788 * 5 4 3 7 7 C 1.48283 * 128.71459 * 179.88383 * 6 5 4 8 8 O 1.21500 * 119.99713 * 179.68010 * 7 6 5 9 9 N 1.34770 * 119.99914 * 359.67700 * 7 6 5 10 10 C 1.46500 * 120.00256 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46596 * 325.00243 * 10 9 7 12 12 C 1.53006 * 109.47249 * 84.99846 * 10 9 7 13 13 C 1.52997 * 109.47473 * 205.00145 * 10 9 7 14 14 C 1.53001 * 109.47049 * 64.99864 * 13 10 9 15 15 N 1.46496 * 109.46907 * 180.02562 * 14 13 10 16 16 C 1.34783 * 119.99823 * 179.97438 * 15 14 13 17 17 O 1.21272 * 120.00057 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99949 * 180.02562 * 16 15 14 19 19 S 1.80999 * 109.47175 * 180.02562 * 18 16 15 20 20 C 1.76195 * 99.99903 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00216 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99795 * 179.97438 * 20 19 18 23 23 N 1.31631 * 120.00164 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00194 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47465 * 59.99477 * 24 22 20 26 26 H 1.48496 * 109.47507 * 180.02562 * 24 22 20 27 27 H 1.48510 * 109.46494 * 299.99907 * 24 22 20 28 28 H 1.09004 * 109.46958 * 269.97120 * 1 2 3 29 29 H 1.08999 * 109.47295 * 29.97437 * 1 2 3 30 30 H 1.09007 * 109.46894 * 149.97364 * 1 2 3 31 31 H 0.97005 * 120.00370 * 359.97438 * 9 7 6 32 32 H 1.09001 * 109.47002 * 60.00085 * 12 10 9 33 33 H 1.08993 * 109.46955 * 180.02562 * 12 10 9 34 34 H 1.09000 * 109.47050 * 300.00351 * 12 10 9 35 35 H 1.08998 * 109.47192 * 185.00019 * 13 10 9 36 36 H 1.08998 * 109.46934 * 304.99865 * 13 10 9 37 37 H 1.08998 * 109.47250 * 300.00119 * 14 13 10 38 38 H 1.08998 * 109.47252 * 60.00195 * 14 13 10 39 39 H 0.97002 * 120.00674 * 0.02562 * 15 14 13 40 40 H 1.09002 * 109.46710 * 299.99997 * 18 16 15 41 41 H 1.08998 * 109.47090 * 60.00200 * 18 16 15 42 42 H 0.97001 * 120.00034 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0205 0.0000 4 8 3.4652 0.6266 -0.0005 5 7 3.6102 -0.5736 0.0041 6 6 2.4281 -1.1519 -0.0006 7 6 2.1035 -2.5988 -0.0001 8 8 0.9438 -2.9611 0.0009 9 7 3.0948 -3.5118 -0.0008 10 6 2.7742 -4.9412 -0.0009 11 1 1.8735 -5.1116 0.5890 12 6 2.5391 -5.4111 -1.4379 13 6 3.9385 -5.7252 0.6080 14 6 4.0936 -5.3453 2.0819 15 7 5.2088 -6.0954 2.6647 16 6 5.5336 -5.9214 3.9612 17 8 4.9023 -5.1442 4.6454 18 6 6.6812 -6.6927 4.5607 19 16 6.8647 -6.2434 6.3044 20 6 8.2345 -7.2622 6.7403 21 1 8.6865 -7.9052 5.9997 22 6 8.7333 -7.2375 8.0353 23 7 8.1834 -6.4526 8.9376 24 14 10.1860 -8.3171 8.4974 25 1 11.3559 -7.9599 7.6555 26 1 10.5230 -8.1078 9.9284 27 1 9.8335 -9.7426 8.2758 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5143 31 1 4.0207 -3.2224 -0.0020 32 1 3.4397 -5.2407 -2.0278 33 1 2.3001 -6.4746 -1.4379 34 1 1.7096 -4.8527 -1.8717 35 1 3.7387 -6.7936 0.5272 36 1 4.8571 -5.4858 0.0724 37 1 4.2934 -4.2768 2.1627 38 1 3.1750 -5.5846 2.6175 39 1 5.7141 -6.7169 2.1175 40 1 6.4820 -7.7613 4.4802 41 1 7.5995 -6.4528 4.0247 42 1 8.5322 -6.4351 9.8426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075678963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:30 Heat of formation + Delta-G solvation = 28.860874 kcal Electronic energy + Delta-G solvation = -26131.582924 eV Core-core repulsion = 22050.107027 eV Total energy + Delta-G solvation = -4081.475897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -47.30677 -40.45601 -39.20916 -37.11483 -35.62178 -35.17032 -34.53182 -32.44314 -32.12807 -30.23637 -29.80361 -28.21515 -26.38663 -25.50662 -23.68544 -23.03452 -21.97185 -21.12948 -20.39219 -19.46845 -18.91099 -17.87211 -17.59227 -16.91670 -16.26532 -16.09664 -15.50807 -15.42288 -14.97327 -14.81688 -14.48535 -14.28970 -14.03300 -13.96543 -13.87136 -13.79091 -13.31637 -13.05021 -12.63791 -12.50722 -12.42041 -12.31452 -12.23959 -11.79281 -11.65743 -11.59146 -11.39716 -11.06180 -11.04956 -10.84987 -10.78271 -10.76898 -9.84681 -9.75605 -9.44320 -9.08017 -8.95454 -8.25959 -6.51980 -6.22796 -3.93843 0.29846 0.87723 2.13006 2.44892 2.91347 2.97604 2.98414 3.05622 3.22387 3.26132 3.29097 3.39992 3.63986 4.19096 4.19727 4.28449 4.35896 4.42747 4.61057 4.65795 4.92845 4.95644 4.99189 5.12174 5.12591 5.15930 5.19908 5.21963 5.44154 5.49928 5.58471 5.60682 5.71685 5.83916 5.85583 5.90035 6.10606 6.53375 6.77261 7.43323 7.57698 7.64156 8.00019 8.33549 8.56552 9.22212 10.84551 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.016158 B = 0.001895 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.487805 B =14769.973213 C =15837.468052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.063 3.937 3 N -0.356 5.356 4 O 0.346 5.654 5 N -0.317 5.317 6 C -0.047 4.047 7 C 0.611 3.389 8 O -0.510 6.510 9 N -0.705 5.705 10 C 0.146 3.854 11 H 0.100 0.900 12 C -0.164 4.164 13 C -0.141 4.141 14 C 0.120 3.880 15 N -0.740 5.740 16 C 0.531 3.469 17 O -0.516 6.516 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.409 0.591 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.398 0.602 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.061 6.738 -25.574 29.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.103 4.103 3 N -0.082 5.082 4 O 0.120 5.880 5 N -0.037 5.037 6 C -0.213 4.213 7 C 0.394 3.606 8 O -0.383 6.383 9 N -0.358 5.358 10 C 0.042 3.958 11 H 0.118 0.882 12 C -0.222 4.222 13 C -0.179 4.179 14 C -0.005 4.005 15 N -0.395 5.395 16 C 0.317 3.683 17 O -0.390 6.390 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.120 0.880 31 H 0.245 0.755 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.232 0.768 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.017 8.503 -24.215 29.243 hybrid contribution 1.835 -2.227 -0.720 2.974 sum -12.182 6.275 -24.935 28.453 Atomic orbital electron populations 1.20366 0.82805 1.05239 1.04982 1.26269 1.00434 0.85048 0.98558 1.75099 0.91096 1.23931 1.18025 1.85084 1.23341 1.16484 1.63128 1.75368 1.22986 0.93004 1.12332 1.26042 0.88288 0.98400 1.08551 1.16394 0.85635 0.81510 0.77089 1.90830 1.18778 1.79496 1.49175 1.45972 1.09632 1.06458 1.73732 1.21058 0.99192 0.77913 0.97667 0.88234 1.22183 1.02510 1.02114 0.95371 1.22146 0.98730 1.01545 0.95463 1.21261 0.90557 0.96673 0.91991 1.45983 1.35249 1.46619 1.11672 1.20338 0.84712 0.82283 0.80983 1.90710 1.52378 1.35879 1.60049 1.23530 0.98293 1.02571 1.06003 1.85420 1.42973 1.57520 0.97470 1.22820 1.17989 1.28679 0.98982 0.90962 1.25000 0.97481 0.95826 0.95303 1.70007 1.40178 1.36397 1.03679 0.86218 0.81411 0.80248 0.77582 1.19929 1.20800 1.19936 0.88603 0.89348 0.87984 0.75514 0.92100 0.90857 0.91740 0.88903 0.90273 0.91752 0.91402 0.76786 0.89193 0.89210 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.22 36.00 0.37 -0.08 16 2 C 0.06 0.55 7.79 -79.33 -0.62 -0.07 16 3 N -0.36 -3.39 12.22 33.76 0.41 -2.98 16 4 O 0.35 3.31 11.65 27.27 0.32 3.63 16 5 N -0.32 -3.05 12.13 33.49 0.41 -2.65 16 6 C -0.05 -0.45 7.56 -80.07 -0.61 -1.05 16 7 C 0.61 5.80 7.81 -12.13 -0.09 5.70 16 8 O -0.51 -5.72 15.62 5.37 0.08 -5.64 16 9 N -0.71 -5.30 4.53 -54.61 -0.25 -5.55 16 10 C 0.15 0.95 2.57 -67.93 -0.17 0.78 16 11 H 0.10 0.78 7.58 -51.93 -0.39 0.39 16 12 C -0.16 -0.87 9.48 37.16 0.35 -0.52 16 13 C -0.14 -0.84 4.87 -26.73 -0.13 -0.97 16 14 C 0.12 1.24 5.56 -4.04 -0.02 1.22 16 15 N -0.74 -9.08 5.56 -60.30 -0.33 -9.42 16 16 C 0.53 9.69 7.85 -10.98 -0.09 9.60 16 17 O -0.52 -11.72 15.86 5.56 0.09 -11.63 16 18 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 21 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 24 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 0.60 7.31 -51.93 -0.38 0.22 16 31 H 0.41 2.71 8.46 -40.82 -0.35 2.37 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.76 7.75 -51.93 -0.40 0.36 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.40 3.56 8.47 -40.82 -0.35 3.22 16 40 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 41 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 384.21 15.07 5.79 5.79 Total: -1.00 -36.12 384.21 -6.22 -42.33 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.64 Total: 0.22 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -0.59 Total: -1.13 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.97 Total: -46.02 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.49 Total: -13.64 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.12 -6.22 -42.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075678963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.193 kcal (2) G-P(sol) polarization free energy of solvation -36.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds